Contig 012803:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002G03+                                                            ATACAGCGAC
                      ____________________________________________________________
consensus                                                               ATACAGCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002G03+          AAGTAATATACTGACAatgtggaaacagaAgtGTCTACACAAAACATGCCCattgggTAC
                      ____________________________________________________________
consensus             AAGTAATATACTGACATACACCTTTGTCTACAGTCTACACAAAACATGCCCTAACCCTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002G03+          TAGATATAATTACTTACCAGTTCAACACAtgaatTAGATATAATGGTATTGTATACAGTC
                      ____________________________________________________________
consensus             TAGATATAATTACTTACCAGTTCAACACAACTTATAGATATAATGGTATTGTATACAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP019G12+                      GGTCCTGTTTTATTTACTATaacgaatatactgaggaatTcacTctaAA
rJMCP002G03+          ACATACTTGTTGGTCCTGTTTTATTTACTATTTGCTTATATGACTCCTTATGTGTGATAA
                      ____________________________________________________________
consensus             ACATACTTGTTGGTCCTGTTTTATTTACTATTTGCTTATATGACTCCTTATGTGTGATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP019G12+           GTTTCaTGAATGATTTGATTATCAAAATTCAACCTCTCTACTCCTTCAAAGGAAATAAAG
rJMCP002G03+          GTTaCTTGAATGATTTGATTATCAAAATTCAACCTCTCTACTCCTTCAAAGGAAATAAAG
                      ____________________________________________________________
consensus             GTTTCTTGAATGATTTGATTATCAAAATTCAACCTCTCTACTCCTTCAAAGGAAATAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP019G12+           TAGGAAAAGGAAGTTcAtATAGAAATATAGAATAagTCATTGATGGGATAAAAATGCTTC
rJMCP002G03+          TAGGAAAAGGAAGTTGAAATAGAAATATAGAATATCTCATTGATGGGATAAAAATGCTTC
                      ____________________________________________________________
consensus             TAGGAAAAGGAAGTTGAAATAGAAATATAGAATATCTCATTGATGGGATAAAAATGCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP019G12+           AGG                                                         
rJMCP002G03+          AGGCCTGAGACAGATGAGGAAAAGAATTTGAAAAAAGAAATAGAACAGCTCAAGAAAGAA
rJMCP020B12+                  GACAGATGAGGAAAAGAATTTGAAAAAAGAAATAGAACAGCTCAAGAAAGAA
                      ____________________________________________________________
consensus             AGGCCTGAGACAGATGAGGAAAAGAATTTGAAAAAAGAAATAGAACAGCTCAAGAAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002G03+          GCtgTTCAActacgaccacAAGATCAGGCAcggtgggtactaaacATAAAagAAtttctt
rJMCP020B12+          GCACTTCAAGATGCTGGTGAAGATCAGGCAGCCACCCATGATTTGATAAATCAAAAAGAA
                      ____________________________________________________________
consensus             GCACTTCAAGATGCTGGTGAAGATCAGGCAGCCACCCATGATTTGATAAATCAAAAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002G03+          tcccttatccttctcaactataggctctgaacctactgtttcaagcTTTTGCTGAGAAAA
rJMCP020B12+          AGGGAATTGGAATTGCTG--ATCCGTGACTTGGATGACAAAGTTCGTTTTGCTGAGAAAA
                      ____________________________________________________________
consensus             AGGGAATTGGAATTGTTGATATCCGTGACTTGGATGACAAAGTTCGTTTTGCTGAGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002G03+          CAACCGAAAGCCCAGGCTCAGGGTCGAACAGAGTTTCAAGCTTTGCTGAGCGTCCCCCAT
rJMCP020B12+          CAACCGAAAGCCCAGGCTCAGGGTCGAACAGAGTTTCAAGCTTTGCTGAGCGTCCCCCAT
                      ____________________________________________________________
consensus             CAACCGAAAGCCCAGGCTCAGGGTCGAACAGAGTTTCAAGCTTTGCTGAGCGTCCCCCAT