Contig 012802:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016G11Sequence334012802 (3)
JMFF016I20Sequence618023702ref|XP_004241220.1|7e-30PREDICTED: scarecrow-like protein 14 [Solanum lycopersicum]702012802 (3)ref|XP_009606498.1|2e-79PREDICTED: scarecrow-like protein 14 [Nicotiana tomentosiformis]
JMSF053C13Sequence697010951 (2)ref|XP_006367135.1|3e-11PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9-like [Solanum tuberosum]891012802 (3)ref|XP_009606498.1|3e-108PREDICTED: scarecrow-like protein 14 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF053C13+                                            TGTGAGCGGTTTGGTGTACCATTCGA
                      ____________________________________________________________
consensus                                               TGTGAGCGGTTTGGTGTACCATTCGA
 
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rJMSF053C13+          GTACAATGCTATAGCAACTCAGAATTNGGGAGACGATTAAAATCGAAGATTTGAAGCTCG
                      ____________________________________________________________
consensus             GTACAATGCTATAGCAACTCAGAATTNGGGAGACGATTAAAATCGAAGATTTGAAGCTCG
 
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rJMSF053C13+          TGAGCGGTGAGGTGGTTGCTGTGAACTGTTTGTATCGGTTTAAAAACCTGCTCGACGAGA
                      ____________________________________________________________
consensus             TGAGCGGTGAGGTGGTTGCTGTGAACTGTTTGTATCGGTTTAAAAACCTGCTCGACGAGA
 
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rJMFF016I20+                                                    TCCGGAAAATCAACCCGA
rJMSF053C13+          CGGTGGCGGTTGACAGCCCCCGCGATGCGGTTCTAAGCCTAATCCGGAAAATCAACCCGA
                      ____________________________________________________________
consensus             CGGTGGCGGTTGACAGCCCCCGCGATGCGGTTCTAAGCCTAATCCGGAAAATCAACCCGA
 
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rJMFF016I20+          GTATTTTCGTGCACGCTGTCATAAACGGATCTTACAGCGCTCCTTTCTTCGTTACTCGGT
rJMSF053C13+          GTATTTTCGTGCACGCTGTCATAAACGGATCTTACAGCGCTCCTTTCTTCGTTACTCGGT
                      ____________________________________________________________
consensus             GTATTTTCGTGCACGCTGTCATAAACGGATCTTACAGCGCTCCTTTCTTCGTTACTCGGT
 
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rJMFF016I20+          TCCGGGAGGCTCTCTTCCACTTCTCCGCACTCTTTGATATGTTTGACGCCACAATCCCCC
rJMSF053C13+          TCCGGGAGGCTCTCTTCCACTTCTCCGCACTCTTTGATATGTTTGACGCCACAATCCCCC
                      ____________________________________________________________
consensus             TCCGGGAGGCTCTCTTCCACTTCTCCGCACTCTTTGATATGTTTGACGCCACAATCCCCC
 
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rJMFF016I20+          GCGACGATCAGCATAGGTTTCATTTCGAGCAAGAATTCTACGGGCGCGAGACGTTGAATG
rJMSF053C13+          GCGACGATCAGCATAGGTTTCATTTCGAGCAAGAATTCTACGGGCGCGAGACGTTGAATG
                      ____________________________________________________________
consensus             GCGACGATCAGCATAGGTTTCATTTCGAGCAAGAATTCTACGGGCGCGAGACGTTGAATG
 
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rJMFF016I20+          TGATTGCCTGCGAGGGCGTAGAGCGGGTCGAGAGGGCTGAGACTTACAAGCAATGGCAAG
rJMSF053C13+          TGATTGCCTGCGAGGGCGTAGAGCGGGTCGAGAGGGCTGAGACTTACAAGCAATGGCAAG
                      ____________________________________________________________
consensus             TGATTGCCTGCGAGGGCGTAGAGCGGGTCGAGAGGGCTGAGACTTACAAGCAATGGCAAG
 
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rJMFF016I20+          TGCGGACTATGAGGGCCGGGTTCAAGCTTCTTCCGTTGAACCCGGAGCTGATGACCAAAC
rJMSF053C13+          TGCGGACTATGAGGGCCGGGTTCAAGCTTCTTCCGTTGAACCCGGAGCTGATGACCAAAC
                      ____________________________________________________________
consensus             TGCGGACTATGAGGGCCGGGTTCAAGCTTCTTCCGTTGAACCCGGAGCTGATGACCAAAC
 
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rJMFF016I20+          TGAGCGAGAAGAAGGGTGCGGGATACCACCGAGATTTCTTGTTCGATGAAGATGGTAAAT
rJMSF053C13+          TGAGCGAGAAGAAGGGTGCGGGATACCACCGAGATTTCTTGTTCGATGAAGATGGTAAAT
                      ____________________________________________________________
consensus             TGAGCGAGAAGAAGGGTGCGGGATACCACCGAGATTTCTTGTTCGATGAAGATGGTAAAT
 
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rJMFF016I20+          GGATGCTGCAGGGATGGAAGGGCCGGCTTATTTGCGCTAGCTCCTGTTGGGTACCTGCAT
rJMSF053C13+          GGATGCTGCAGGGATGGAAGGGCCGGCTTATTTGCGCTAGCTCCTGTTGGGTACCTGCAT
rJMCP016G11-                                    CTTATTTGCGCTAGCTCCTGTTGGGTACCTGCAT
                      ____________________________________________________________
consensus             GGATGCTGCAGGGATGGAAGGGCCGGCTTATTTGCGCTAGCTCCTGTTGGGTACCTGCAT
 
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rJMFF016I20+          AGAAAATTTTTGAAGTGGTTAACTATTCTGAGAATCTAAGGAGAAGAATCAAGTTGGTGT
rJMSF053C13+          AGAAAATTTTTGAAGTGGTTAACTATTCTGAGAATCTAAGGAGAAGAATCAAGTTGGTGT
rJMCP016G11-          AGAAAATTTTTGAAGTGGTTAACTATTCTGAGAATCTAAGGAGAAGAATCAAGTTGGTGT
                      ____________________________________________________________
consensus             AGAAAATTTTTGAAGTGGTTAACTATTCTGAGAATCTAAGGAGAAGAATCAAGTTGGTGT
 
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rJMFF016I20+          TGATGCCTCAATTTCTCCCATGATTTGCCTAGTACTTGACTTTTTGTCTGCTGCAGGTTG
rJMSF053C13+          TGATGCCTCAATTTCTCCCATGATTTGCCTAGTACTTGACTTTTTGTCTGCTGCAGGTTG
rJMCP016G11-          TGATGCCTCAATTTCTCCCATGATTTGCCTAGTACTTGACTTTTTGTCTGCTGCAGGTTG
                      ____________________________________________________________
consensus             TGATGCCTCAATTTCTCCCATGATTTGCCTAGTACTTGACTTTTTGTCTGCTGCAGGTTG
 
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rJMFF016I20+          ATGTGTTTAATGTAGAAATTATCTGATCTGTTTGTAAAACATCATAGTATTAGTAGCTGT
rJMSF053C13+          ATGTGTTTAATGTAGAAATTATCTGATCTGTTTGTAAAACATCATAGTATTAGTAGCTGT
rJMCP016G11-          ATGTGTTTAATGTtGAAATTATCTGATCTGTTTGTAAAACATCATAGTATTAGTAGCTGT
                      ____________________________________________________________
consensus             ATGTGTTTAATGTAGAAATTATCTGATCTGTTTGTAAAACATCATAGTATTAGTAGCTGT
 
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rJMFF016I20+          TATATACCACTCCAGGCGTGTTTGATGCTTTGTTGCTTCATCCCTGTACACGCCCAGTGG
rJMSF053C13+          TATATACCACTCCAGGCGTGTTTGATGCTTTGTTGCTTCATCCCTGTACACGCCCAGTGG
rJMCP016G11-          TATATACCACTCCAGGCGTGTTTGATGCTTTGTTGCTTCATCCCTGTACACGCCCAGTGG
                      ____________________________________________________________
consensus             TATATACCACTCCAGGCGTGTTTGATGCTTTGTTGCTTCATCCCTGTACACGCCCAGTGG
 
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rJMFF016I20+          AGAAAACAATAAATTTTGTT                                        
rJMSF053C13+          AGAAAACAATAAATTTTGTT                                        
rJMCP016G11-          AGAAAACAATAAATTTTGTTTGCCCAGAAATATTACTCTAATCAACTAGTTTGTTATAGT
                      ____________________________________________________________
consensus             AGAAAACAATAAATTTTGTTTGCCCAGAAATATTACTCTAATCAACTAGTTTGTTATAGT