Contig 012800:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016D10Sequence609012800 (2)gb|EPS74553.1|1e-52hypothetical protein M569_00200 [Genlisea aurea]
JMSF018G04Sequence251012800 (2)824015013ref|XP_006341358.1|2e-40PREDICTED: stromal cell-derived factor 2-like protein-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMCP016D10+                                                             ATCACCTTG
                      ____________________________________________________________
consensus                                                                ATCACCTTG
 
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rJMCP016D10+          CTTTGCAGACGAGTCTGGAGCAGGCTTAACAATCCAATAGCTGTTGGCATCATCTACAGT
                      ____________________________________________________________
consensus             CTTTGCAGACGAGTCTGGAGCAGGCTTAACAATCCAATAGCTGTTGGCATCATCTACAGT
 
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rJMCP016D10+          AGGATATCCGGTGACCGACTGCTGCCCACTGCCAGAACCGTAGGGCACATCATGCGAATG
                      ____________________________________________________________
consensus             AGGATATCCGGTGACCGACTGCTGCCCACTGCCAGAACCGTAGGGCACATCATGCGAATG
 
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rJMCP016D10+          CAACCGGACCTTTGTCTTCTCATGCATCAACTTGATTGTTGATCCATAAGTAATCTGGAC
                      ____________________________________________________________
consensus             CAACCGGACCTTTGTCTTCTCATGCATCAACTTGATTGTTGATCCATAAGTAATCTGGAC
 
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rJMCP016D10+          GCCTTCAGAAGCGGCGGAGGCAGAGCCGATCGAGTAATCGGAATCGAGGGTGAGGATGAG
                      ____________________________________________________________
consensus             GCCTTCAGAAGCGGCGGAGGCAGAGCCGATCGAGTAATCGGAATCGAGGGTGAGGATGAG
 
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rJMCP016D10+          AAAGATGGCGAGGGCGAAACAAGAGAGCGCCATAACAAATAGCAGTACTATGAACCAGGT
                      ____________________________________________________________
consensus             AAAGATGGCGAGGGCGAAACAAGAGAGCGCCATAACAAATAGCAGTACTATGAACCAGGT
 
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JMSF018G04+                                                          ACACTAACCGGGT
rJMCP016D10+          CCTTTGCCAAACTGGGAGGTCCAAATCGGAAGTTGCGGGTTCGCGGTACACTAACCGGGT
                      ____________________________________________________________
consensus             CCTTTGCCAAACTGGGAGGTCCAAATCGGAAGTTGCGGGTTCGCGGTACACTAACCGGGT
 
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JMSF018G04+           CGGACTGGAAAGTGTTTGATTCCACAACGTCGTCGACGGTGGTGCTGACTTCCTACGGGT
rJMCP016D10+          CGGACTGGAAAGTGTTTGATTCCACAACGTCGTCGACGGTGGTGCTGACTTCCTACGGGT
                      ____________________________________________________________
consensus             CGGACTGGAAAGTGTTTGATTCCACAACGTCGTCGACGGTGGTGCTGACTTCCTACGGGT
 
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JMSF018G04+           GAGATTTTGACGTTGGCGTTGTTGTTGGCTTGAAGAAGCCACGGTTGAAGCTCTTGGAGG
rJMCP016D10+          GAGATTTTGACGTTGGCGTTGTTGTTGGCTTcttcAAGCCACGGTTGAAGCTCTTGGAGG
                      ____________________________________________________________
consensus             GAGATTTTGACGTTGGCGTTGTTGTTGGCTTGAAGAAGCCACGGTTGAAGCTCTTGGAGG
 
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JMSF018G04+           GCGCCTGACGGAGCTCCGATGAAGATCCGATCAAAACACTTCTGATTCCGATTTTCCGGC
rJMCP016D10+          GCGCCTGACGGAGCTCCGATGAAGATCCGATCAAAACACTTCTGATTCCGATTTTCCGGC
                      ____________________________________________________________
consensus             GCGCCTGACGGAGCTCCGATGAAGATCCGATCAAAACACTTCTGATTCCGATTTTCCGGC
 
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JMSF018G04+           GACGCTTTTATTTATTTTCTTTTTCCGTATTTAATGTTTCATTTTTCAGTTCTTCTC   
rJMCP016D10+          GACGCTTTTATTTATTTTCTTTTTCCGTATTTAATGTTTCATTTTTCAGTTCTTCTCTCC
                      ____________________________________________________________
consensus             GACGCTTTTATTTATTTTCTTTTTCCGTATTTAATGTTTCATTTTTCAGTTCTTCTCTCC