| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP015D04 | Sequence | 427 | 012799 (4) | ||||||||
| JMFF026P16 | Sequence | 527 | 008900 (4) | ref|XP_009779051.1| | 2e-73 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Nicotiana sylvestris] | 711 | 012799 (4) | ref|XP_009587145.1| | 2e-52 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Nicotiana tomentosifor |
| JMFF051F12 | Sequence | 557 | 008900 (4) | ref|XP_007034646.1| | 4e-69 | E1 C-terminal related 1 isoform 2, partial [Theobroma cacao] gb|EOY05572.1| E1 C | 600 | 012799 (4) | ref|XP_009587145.1| | 5e-25 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Nicotiana tomentosifor |
| JMSF001J07 | Sequence | 266 | 008900 (4) | ref|XP_006349226.1| | 1e-13 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like isoform X1 [Solanu | 727 | 012799 (4) | ref|XP_009779051.1| | 1e-66 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF001J07+ ACACCAAAGTGACTG
____________________________________________________________
consensus ACACCAAAGTGACTG
. : . : . : . : . : . :
rJMSF001J07+ AGTTTGAGAAGGACACAGAGTGTCTTGTTTGTGGTCCTGGTGTTCTTATTGAGCTAGAAC
rJMFF026P16+ CTGGTGTTCTTATTGAGCTAGAAC
____________________________________________________________
consensus AGTTTGAGAAGGACACAGAGTGTCTTGTTTGTGGTCCTGGTGTTCTTATTGAGCTAGAAC
. : . : . : . : . : . :
rJMSF001J07+ CTTCAGTTACTCTGAAAAAGTTCATTGGTATGCTTGAAGATCATCCTAAGCTGCTCCTAA
rJMFF026P16+ CTTCAGNTACTCTGAAAAAGTTCATTGATATGCTTGAAGATCATCTTAAGCTGCTCCTAA
____________________________________________________________
consensus CTTCAGTTACTCTGAAAAAGTTCATTGGTATGCTTGAAGATCATCTTAAGCTGCTCCTAA
. : . : . : . : . : . :
rJMSF001J07+ CTAGAGCTAGTGTGACATATCGAGGGAAGAATCTCTACATGCAAGCGCCTCAAGTGCTGG
rJMFF026P16+ CTAGAGCTAGTGTGACATATCGAGGGAAGAATCTNTACATGCAAGCGCCTCAAGTGCTGG
rJMFF051F12+ GG
____________________________________________________________
consensus CTAGAGCTAGTGTGACATATCGAGGGAAGAATCTCTACATGCAAGCGCCTCAAGTGCTGG
. : . : . : . : . : . :
rJMSF001J07+ AAGAAATGACTCGATCAAATCTGGATTTACCATTGCTTGATCTCATGGATAAGACTCCCC
rJMFF026P16+ AAGAAATGACTCGATCAAATCNGGATTTACCATTGCTTGATCTCATGGATAAGACTCCCC
rJMFF051F12+ AAGAAATGACTCGATCAAATCTGGATTTACCATTGCTGNATCTCATGGATAAGACTCCCC
____________________________________________________________
consensus AAGAAATGACTCGATCAAATCTGGATTTACCATTGCTTGATCTCATGGATAAGACTCCCC
. : . : . : . : . : . :
rJMSF001J07+ GAGATATAATCCATGTTAACGGCATGGCTCGGAAGGGTGACAAGAAGCAATCATGCTTGA
rJMFF026P16+ GAGATATAATCCATGTTAACGGCATGGCTCGGAAGGGTGACAAGAAGCAATCATGCTTGA
rJMFF051F12+ GAGATATAATCCATGTTAACGGCATGGCTCGGAAGGGTGACAAGAAGCAATCATGCTTGA
____________________________________________________________
consensus GAGATATAATCCATGTTAACGGCATGGCTCGGAAGGGTGACAAGAAGCAATCATGCTTGA
. : . : . : . : . : . :
rJMSF001J07+ GAAAATTACGCGTGGTTTTCAAAGGCATCGATGGCGTTACAGACATGGACATGGCCGGTG
rJMFF026P16+ GAAAATTACGCGTGGTTTTCAAAGGCATCGATGGCGTTACAGACATGGACATGGCCGGTG
rJMFF051F12+ GAAAATTACGCGTGGTTTTCAAAGGCATCGATGGCGTTACAGACATGGACATGGCCGGTG
rJMCP015D04- GCCGGTG
____________________________________________________________
consensus GAAAATTACGCGTGGTTTTCAAAGGCATCGATGGCGTTACAGACATGGACATGGCCGGTG
. : . : . : . : . : . :
rJMSF001J07+ GGGCGTAACTGTCATTCTGCATTGGTCTTTACTCGCTGAGCTCTTTGGTTGCAGGTTCAT
rJMFF026P16+ GGGCGTAACTGTCATTNTGCATTGGTCTTTACTCGCTGAGCTCTTTGGTTGCAGGTTCAT
rJMFF051F12+ GGGCGTAACTGTCATTCTGCATTGGTCTTTACTCGCTGAGCTCTTTGGTTGCAGGTTCAT
rJMCP015D04- GGGCGTAACTGTCATTCTGCATTGGTCTTTACTCGCTGAGCTCTTTGGTTGCAGGTTCAT
____________________________________________________________
consensus GGGCGTAACTGTCATTCTGCATTGGTCTTTACTCGCTGAGCTCTTTGGTTGCAGGTTCAT
. : . : . : . : . : . :
rJMSF001J07+ ACACACACTCTACTCTGTGATCTCAATTCAGCAAAAAAGGCAGTAATTGACAAGACGTAA
rJMFF026P16+ ACACNCACTGTACTCTGTGATCTCAATTCAGCAAAAAAGGCAGTAATTGACAAGACGTAA
rJMFF051F12+ ACACACACTCTACTCTGTGATCTCAATTCAGCAAAAAAGGCAGTAATTGACAAGACGTAA
rJMCP015D04- ACACACACTCTACTCTGTGATCTCAATTCAGCAAAAAAGGCAGTAATTGACAAGACGTAA
____________________________________________________________
consensus ACACACACTCTACTCTGTGATCTCAATTCAGCAAAAAAGGCAGTAATTGACAAGACGTAA
. : . : . : . : . : . :
rJMSF001J07+ TGTGCGAACCCTTCCATTTTTGCAAGATTTCTCCAAGTAATTTCATCAGTATAATGTGAG
rJMFF026P16+ TGTGCGAACCCTTCCATTTTTGCAAGATTTCTCCAAGTAATTTCATCAGTATAATGTGAG
rJMFF051F12+ TGTGCGAACCCTTCCATTTTTGCAAGATTTCTCCAAGTAATTTCATCAGTATAATGTGAG
rJMCP015D04- TGTGCGAACCCTTCCATTTTTGCAAGATTTCTCCAAGTAATTTCATCAGTATAATGTGAG
____________________________________________________________
consensus TGTGCGAACCCTTCCATTTTTGCAAGATTTCTCCAAGTAATTTCATCAGTATAATGTGAG
. : . : . : . : . : . :
rJMSF001J07+ AATTTGATGGATTCTATGAACTTAAATTTAGATGTCTTTAGGGTATCTCTGGAGAGAACT
rJMFF026P16+ AATTTGATGGATTCTATGAACTTAAATTTAGATGTCTTTAGGGTATCTCTGGAGAGAACT
rJMFF051F12+ AATTTGATGGATTCTATGAACTTAAATTTAGATGTCTTTAGGGTATCTCTGGAGAGAACT
rJMCP015D04- AATTTGATGGATTCTATGAACTTAAATTTAGATGTCTTTAGGGTATCTCTGGAGAGAACT
____________________________________________________________
consensus AATTTGATGGATTCTATGAACTTAAATTTAGATGTCTTTAGGGTATCTCTGGAGAGAACT
. : . : . : . : . : . :
rJMSF001J07+ TTTCTAAGTAAAAAGATGATGTGGAGAGGAGAGAGACAAGGAAACGCTCTACACTTTGTT
rJMFF026P16+ TTTNTAAGTAAAAAGATGATGTGGAGAGGAGAGAGACAAGGAAACGCTCTACACTTTGTN
rJMFF051F12+ TTTCTAAGTAAAAAGATGATGTGGAGAGGAGAGAGACAAGGAAACGCTCTACACTTTGTT
rJMCP015D04- TTTCTAAGTAAAAAGATGATGTGGAGAGGAGAGAGACAAGGAAACGCTCTACACTTTGTT
____________________________________________________________
consensus TTTCTAAGTAAAAAGATGATGTGGAGAGGAGAGAGACAAGGAAACGCTCTACACTTTGTT
. : . : . : . : . : . :
rJMSF001J07+ GAAAACTGCAGTGTGTAGCATACTGCGCCCCAGCAGGTGTGCAATTTCTAAT
rJMFF026P16+ GAAAACTGCAGTGTGTAGCATNCTGCGCCCCAGCAGGTGTGCAATTTCTAATGATTCTTG
rJMFF051F12+ GAAAACTGCAGTGTGTAGCATACTGCGCCCCAGCAGGTGTGCAATTTCTAATGATTCTTG
rJMCP015D04- GAAAACTGCAGTGTGTAGCATACTGCGCCCCAGCAGGTGTGCAATTTCTAATGATTCTTG
____________________________________________________________
consensus GAAAACTGCAGTGTGTAGCATACTGCGCCCCAGCAGGTGTGCAATTTCTAATGATTCTTG
. : . : . : . : . : . :
rJMFF026P16+ TACTGAAGATTACGAG
rJMFF051F12+ TACTGAAGATTACGAGTT
rJMCP015D04- TACTGAAGATTACGAGTTCGATTCGATTCTTGTTAATACCCGTTCAATTAAGTTCGTTGT
____________________________________________________________
consensus TACTGAAGATTACGAGTTCGATTCGATTCTTGTTAATACCCGTTCAATTAAGTTCGTTGT