| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF036N23 | Sequence | 595 | 003682 (4) | ref|XP_009777634.1| | 1e-61 | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo | 572 | 012792 (7) | ref|XP_004232589.1| | 1e-43 | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sola |
| JMFN007N04 | Sequence | 427 | 012792 (7) | ref|XP_004232589.1| | 5e-56 | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sola | |||||
| JMFS069F06 | Sequence | 642 | 012792 (7) | ref|XP_004232589.1| | 8e-48 | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sola | |||||
| JMSF006N16 | Sequence | 242 | 006391 (2) | 249 | 012792 (7) | emb|CDP01757.1| | 4e-22 | unnamed protein product [Coffea canephora] | |||
| JMSF013C02 | Sequence | 443 | 012792 (7) | ref|XP_009777635.1| | 1e-55 | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo | 782 | 002239 (29) | dbj|BAA87043.1| | 1e-152 | N-hydroxycinnamoyl/benzoyltransferase [Ipomoea batatas] dbj|BAJ14795.1| hydroxyc |
| JMSF027D12 | Sequence | 591 | 012792 (7) | ref|XP_009777635.1| | 2e-82 | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo | 752 | 016111 | ref|XP_009777635.1| | 4e-48 | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo |
| JMSF052L03 | Sequence | 606 | 003682 (4) | ref|XP_009777634.1| | 2e-64 | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo | 901 | 012792 (7) | ref|XP_004232589.1| | 6e-91 | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sola |
This contig is upended
. : . : . : . : . : . :
JMSF013C02+ TTTGACATTGAGCTAGAAGATCTAGAAGGG
____________________________________________________________
consensus TTTGACATTGAGCTAGAAGATCTAGAAGGG
. : . : . : . : . : . :
JMSF013C02+ CCCATAGATGATGGTCAGCAAGAGAGTTTTGACTTTGAGATTCAAAGGGACATGTGGATA
____________________________________________________________
consensus CCCATAGATGATGGTCAGCAAGAGAGTTTTGACTTTGAGATTCAAAGGGACATGTGGATA
. : . : . : . : . : . :
JMSF013C02+ GACAGATTTTTTGGAGAAAGTGCCAGTGCTCAGAAGTTGGATAGTTTGATGGTGCTCATA
JMSF027D12- GAAAGTGCCAGTGCTCAGAAGTTGGATAGTTTGATGGTGCTCATA
____________________________________________________________
consensus GACAGATTTTTTGGAGAAAGTGCCAGTGCTCAGAAGTTGGATAGTTTGATGGTGCTCATA
. : . : . : . : . : . :
JMSF013C02+ TTTGAGTACTTCATATCTTGCAATGAGAGTGGCCGCCTTGGTCGAGTATTTGACACACTT
JMSF027D12- TTTGAGTACTTCATATCTTGCAATGAGAGTGGCCGCCTTGGTCGAGTATTTGACACACTT
____________________________________________________________
consensus TTTGAGTACTTCATATCTTGCAATGAGAGTGGCCGCCTTGGTCGAGTATTTGACACACTT
. : . : . : . : . : . :
JMSF013C02+ CTTCTGTCCTTTGAAAAAACTGTTTTGACAGCATACAAGTCTAAATTTGCCCAGTTTGTT
JMSF027D12- CTTCTGTCCTTTGAAAAAACTGTTTTGACAGCATACAAGTCTAAATTTGCCCAGTTTGTT
____________________________________________________________
consensus CTTCTGTCCTTTGAAAAAACTGTTTTGACAGCATACAAGTCTAAATTTGCCCAGTTTGTT
. : . : . : . : . : . :
JMSF013C02+ ATGTTCTATGCTTGTTCACTTGATCCTGAGAACTGTGGTAAGAGGTTTGCGAACATGCTC
JMSF027D12- ATGTTCTATGCTTGTTCACTTGATCCTGAGAACTGTGGTAAGAGGTTTGCGAACATGCTC
____________________________________________________________
consensus ATGTTCTATGCTTGTTCACTTGATCCTGAGAACTGTGGTAAGAGGTTTGCGAACATGCTC
. : . : . : . : . : . :
JMSF013C02+ ATTCATATATTTGAGACCAGTGTCCATCTTGAATGGAGAATGAGTGCGGTTGCTTATCTT
JMSF027D12- ATTCATATATTTGAGACCAGTGTCCATCTTGAATGGAGAATGAGTGCGGTTGCTTATCTT
____________________________________________________________
consensus ATTCATATATTTGAGACCAGTGTCCATCTTGAATGGAGAATGAGTGCGGTTGCTTATCTT
. : . : . : . : . : . :
JMSF013C02+ GCCAGTTATCTGGCTCGTGCAAGGTTTATGGACATGCCATTTGTTGCTG
JMSF027D12- GCCAGTTATCTGGCTCGTGCAAGGTTTATGGACATGCCATTTGTTGCTGACTGTTTGGAA
rJMSF006N16+ TGGAA
rJMSF052L03+ AGTTATCTGGCTCGTGCAAGGTTTATGGACATGCCATTTGTTGCTGACTGTTTGGAA
____________________________________________________________
consensus GCCAGTTATCTGGCTCGTGCAAGGTTTATGGACATGCCATTTGTTGCTGACTGTTTGGAA
. : . : . : . : . : . :
JMSF027D12- AGATTGGTGAATTGGTGTTACAATTATTGCAAAAGTAAGACTGGTGAAATTAATCCAAAT
JMFN007N04- ATTAATCCAAAT
rJMSF006N16+ AGATTGGTGAATTGGTGTTACAATTATTGCAAAAGTAAGACTGGNGAAATTAATCCAAAT
rJMSF052L03+ AGATTGGTGAATTGGTGTTATAATTATTGCAAAATTAAAACTGGTGAAATTAATCCAAAT
____________________________________________________________
consensus AGATTGGTGAATTGGTGTTACAATTATTGCAAAAGTAAGACTGGTGAAATTAATCCAAAT
. : . : . : . : . : . :
JMSF027D12- CCTAGAGCTCACAAGGATTTCTATGCTGGATGCCAGGCCATAATGTACATAATTTGCTTC
JMFN007N04- CCTAGAGCTCACAAGGATTTCTATGCTGGATGTCAGGCCATAATGTACATAATTTGCTTC
rJMSF006N16+ CCTAGAGCTCACAAGGATTTCTATGCTGGATGCCAGGCCATAATGTACATAATTTGCTTC
rJMSF052L03+ CCTAGAGCTCACAAGGATTTCTATGCTGGATGTCAGGCCATAATGTACATAATTTGCTTC
____________________________________________________________
consensus CCTAGAGCTCACAAGGATTTCTATGCTGGATGTCAGGCCATAATGTACATAATTTGCTTC
. : . : . : . : . : . :
JMSF027D12- CGGAGGGGATCCATTCATAGTTTATTCCGTATTAAATCTCATCTCCTGCGCATGCGTATA
JMFN007N04- CGGAGGGGATCCATTCATAGTTTATTCCGTATTAAATCTCATCTCCTGCGCATGCGTATA
rJMSF006N16+ CGGAGGGGATCCATTCATAGTTTATTCCGTATTAAATCTCATCTCCTGCGCATGCGTATA
rJMSF052L03+ CGGAGGGGATCCATTCATAGTTTATTCCGTATTAAATCTCATCTCCTGCGCATGCGTATA
____________________________________________________________
consensus CGGAGGGGATCCATTCATAGTTTATTCCGTATTAAATCTCATCTCCTGCGCATGCGTATA
. : . : . : . : . : . :
JMSF027D12- GAGGATATCCTGAGGCATTCATTAAGTCCATTGATGGT
JMFS069F06- GAA
JMFN007N04- GAGGATATCTTGAGGCATTCACTATGTCCATTGATGGTTTGCTTACCATCAATAGTAGAA
rJMSF006N16+ GAGGATATCCTGAGGCATTCATTAAGTCCATTGATGGT
rJMSF052L03+ GAGGATATCTTGAGGCATTCACTATGTCCATTGATGGTTTGCTTACCATCAATAGTAGAA
____________________________________________________________
consensus GAGGATATCTTGAGGCATTCATTATGTCCATTGATGGTTTGCTTACCATCAATAGTAGAA
. : . : . : . : . : . :
JMFS069F06- GAATTCCTTAGGGTGGCAGAAACTACATGTTTATTTAGTTTCCCAGAGAACAATGCCCCC
rJMFF036N23+ CAATGCCCCC
JMFN007N04- GAATTCCTTAGGGTGGCAGAAACTACATGTTTATTTAGTTTCCCAGAGAACAATGCCCCC
rJMSF052L03+ GAATTCCTTAGGGTGGCAGAAACTACATGTTTATTTAGTTTCCCAGAGAACAATGCCCCC
____________________________________________________________
consensus GAATTCCTTAGGGTGGCAGAAACTACATGTTTATTTAGTTTCCCAGAGAACAATGCCCCC
. : . : . : . : . : . :
JMFS069F06- ATTGGTAGTGGTCTACTCGAGTCGGAAGTTTCAATGGCATTTGGTGGGAATCAGAGGCTT
rJMFF036N23+ ATTGGTAGTGGTNTACTCGAGTCGGAAGTTTCAATGGCATTTGGTGGGAATCAGAGGCTT
JMFN007N04- ATTGGTAGTGGTCTACTCGAGTCGGAAGTTTCAATGGCATTTGGTGGGAATCAGAGGCTT
rJMSF052L03+ ATTGGTAGTGGTCTACTCGAGTCGGAAGTTTCAATGGCATTTGGTGGGAATCAGAGGCTT
____________________________________________________________
consensus ATTGGTAGTGGTCTACTCGAGTCGGAAGTTTCAATGGCATTTGGTGGGAATCAGAGGCTT
. : . : . : . : . : . :
JMFS069F06- GACACGTTTTTCCCATTTGACCCATGTTTGCTAAAGAAATCTGACAGGTTTATCAGGCCA
rJMFF036N23+ GACACGTTTTTCCCATTTGACCCATGTTTGCTAAAGAAATCTGACAGGTTTATCAGGCCA
JMFN007N04- GACACGTTTTTCCCATTTGACCCATGTTTGCTAAAGAAATCTGACAGGTTTATCAGGCCA
rJMSF052L03+ GACACGTTTTTCCCATTTGACCCATGTTTGCTAAAGAAATCTGACAGGTTTATCAGGCCA
____________________________________________________________
consensus GACACGTTTTTCCCATTTGACCCATGTTTGCTAAAGAAATCTGACAGGTTTATCAGGCCA
. : . : . : . : . : . :
JMFS069F06- AACTTCATATACTGGTCCATGGTTAGAAATACTTATGACGAGGTTGAGGATGATGAATGC
rJMFF036N23+ AACTTCATATACTGGTCCATGGTTAGAAATACTTATGACGAGGTTGAGGATGATGAATGC
JMFN007N04- AACTTCATATACTGGTCCATGGTTAGAAATACTTATGACGAGGCTGAGGATGATG
rJMSF052L03+ AACTTCATATACTGGTCCATGGTTAGAAATACTTATGACGAGGTTGAGGATGATGAATGC
____________________________________________________________
consensus AACTTCATATACTGGTCCATGGTTAGAAATACTTATGACGAGGTTGAGGATGATGAATGC
. : . : . : . : . : . :
JMFS069F06- ACTAGCGATGAGGATGAGGTTGAAGTTTGCATTCCTGGGAATGGTATGGACATAGTCGAT
rJMFF036N23+ ACTAGCGATGAGGATGAGGTTGAAGTTTGCATTCCTGGGAATGGTATGGACATAGTCGAT
rJMSF052L03+ ACTAGCGATGAGGATGAGGTTGAAGTTTGCATTCCTGGGAATGGTATGGACATAGTCGAT
____________________________________________________________
consensus ACTAGCGATGAGGATGAGGTTGAAGTTTGCATTCCTGGGAATGGTATGGACATAGTCGAT
. : . : . : . : . : . :
JMFS069F06- GGGGGAGCTCCCCGGAGTTGTCATGGTGACAACGGGAATCTTGAGGTTGAATTTGATTAC
rJMFF036N23+ GGAGGAGCTCCCCGGAGTTGTCATGGTGACAACGGGAATCTTGAGGTTGAATTTGATTAC
rJMSF052L03+ GGAGGAGCTCCCCGGAGTTGTCATGGTGACAACGGGAATCTTGAGGTTGAATTTGATTAC
____________________________________________________________
consensus GGAGGAGCTCCCCGGAGTTGTCATGGTGACAACGGGAATCTTGAGGTTGAATTTGATTAC
. : . : . : . : . : . :
JMFS069F06- AACCTGAACAAGATGTCTATAACTCCGAAAAATACATTACTCCAACGATTTGGAGGTGAA
rJMFF036N23+ AACCTGAACAAGATGTCTATAACTCCGAAAAATACATTACTCCAACGATTTGGAGGTGAA
rJMSF052L03+ AACCTGAACAAGATGTCTATAACTCCGAAAAATACATTACTCCAACGATTTGGAGGTGAA
____________________________________________________________
consensus AACCTGAACAAGATGTCTATAACTCCGAAAAATACATTACTCCAACGATTTGGAGGTGAA
. : . : . : . : . : . :
JMFS069F06- GGTGCAGGTTTGCGGATGCCCTCAAGAATCCGACCTTGCCCTGATTCTTTGTGATGGA
rJMFF036N23+ GGTGCAGGTTTGCGGATGCCCTCAAGAATCCGACCTTGCCCTGATTCTTTGTGATGGA
rJMSF052L03+ GGTGCAGGTTTGCGGATGCCCTCAAGAATCCGACCTTGCCCTGATTCTTTGTGATGGATG
____________________________________________________________
consensus GGTGCAGGTTTGCGGATGCCCTCAAGAATCCGACCTTGCCCTGATTCTTTGTGATGGATG
. : . : . : . : . : . :
rJMSF052L03+ GCCCGTTGTCCTTCAGTTTTGCTTTGTGCTGTGCGTAGTAGCCTAGTAGGTAATTGTAAA
____________________________________________________________
consensus GCCCGTTGTCCTTCAGTTTTGCTTTGTGCTGTGCGTAGTAGCCTAGTAGGTAATTGTAAA
. : . : . : . : . : . :
rJMSF052L03+ ATATATAGGAGCTTCAACATTAGTCTCAATTTTGTGGAGTAGCGCAATCTTCTGCTCCAT
____________________________________________________________
consensus ATATATAGGAGCTTCAACATTAGTCTCAATTTTGTGGAGTAGCGCAATCTTCTGCTCCAT