Contig 012789:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042G06Sequence836008105 (4)ref|XP_009627088.1|1e-83PREDICTED: probable pectate lyase 5 [Nicotiana tomentosiformis]789012789 (3)ref|XP_009761365.1|377PREDICTED: probable pectate lyase 13 isoform X1 [Nicotiana sylvestris]
JMSF051B07Sequence690008105 (4)ref|XP_011024360.1|155PREDICTED: probable pectate lyase 13 isoform X4 [Populus euphratica]740012789 (3)ref|XP_009761366.1|365PREDICTED: probable pectate lyase 13 isoform X2 [Nicotiana sylvestris]
JMSF052C09Sequence703008105 (4)ref|XP_011024360.1|157PREDICTED: probable pectate lyase 13 isoform X4 [Populus euphratica]879012789 (3)ref|XP_009761365.1|359PREDICTED: probable pectate lyase 13 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052C09+                               TCCAGCCCGACGCACGTCGGGTACAGAAGCAAGTCCGAC
                      ____________________________________________________________
consensus                                  TCCAGCCCGACGCACGTCGGGTACAGAAGCAAGTCCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042G06+                                                       CCACTGCGCTTTATC
rJMSF052C09+          GGTGACGCCATCTCCATATTCGGGTCCAGGAATATTTTGGATCGACCACTGCGCTTTATC
                      ____________________________________________________________
consensus             GGTGACGCCATCTCCATATTCGGGTCCAGGAATATTTTGGATCGACCACTGCGCTTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+              TGTACCGACGGCTTAGTCGACGCCATCATGGGCTCCACCGCCATCACCATCTCAAA
rJMSF042G06+          TCATTGTACCGACGGCTTAGTCGACGCCATCATGGGCTCCACCGCCATCACCATCTCAAA
rJMSF052C09+          TCATTGTACCGACGGCTTAGTCGACGCCATCATGGGCTCCACCGCCATCACCATCTCAAA
                      ____________________________________________________________
consensus             TCATTGTACCGACGGCTTAGTCGACGCCATCATGGGCTCCACCGCCATCACCATCTCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          CAGCTATTTCTCCCACCACGATGAGGTTATGCTACTGGGACACGACGATAAATACTTGCC
rJMSF042G06+          CAGCTATTTCTCCCACCACGATGAGGTTATGCTACTGGGACACGACGATAAATACTTGCC
rJMSF052C09+          CAGCTATTTCTCCCACCACGATGAGGTTATGCTACTGGGACACGACGATAAATACTTGCC
                      ____________________________________________________________
consensus             CAGCTATTTCTCCCACCACGATGAGGTTATGCTACTGGGACACGACGATAAATACTTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          GGACTCCGGCATGCAGGTAACAATTGCTTTCAATTACTTCGGGGAAGGATTAGTGCAAAG
rJMSF042G06+          GGACTCCGGCATGCAGGTAACAATTGCTTTCAATTACTTCGGGGAAGGATTAGTGCAAAG
rJMSF052C09+          GGACTCCGGCATGCAGGTAACAATTGCTTTCAATTACTTCGGGGAAGGATTAGTGCAAAG
                      ____________________________________________________________
consensus             GGACTCCGGCATGCAGGTAACAATTGCTTTCAATTACTTCGGGGAAGGATTAGTGCAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          GATGCCGCGGTGCCGGCGGGGTTATATACACGTGGTGAACAACGATTTCACGGAATGGAA
rJMSF042G06+          GATGCCGCGGTGCCGGCGGGGTTATATACACGTGGTGGACAACGATTTCACGGAATGGAA
rJMSF052C09+          GATGCCGCGGTGCCGGCGGGGTTATATACACGTGGTGAACAACGATTTCACGGAATGGAA
                      ____________________________________________________________
consensus             GATGCCGCGGTGCCGGCGGGGTTATATACACGTGGTGAACAACGATTTCACGGAATGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          AATGTATGCTATCGGCGGCAGCGCTAACCCCACCATTAACAGCCAGGCCAACCGCTATAC
rJMSF042G06+          AATGTATGCTATCGGCGGCAGCGCTAACCCCACCATTAACAGCCAGGCCAACCGCTATAC
rJMSF052C09+          AATGTATGCTATCGGCGGCAGCGCTAACCCCACCATTAACAGCCAGGCCAACCGCTATAC
                      ____________________________________________________________
consensus             AATGTATGCTATCGGCGGCAGCGCTAACCCCACCATTAACAGCCAGGCCAACCGCTATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          TGCGCCGGCGGACGCTAGTGCTAAGGAGGTGACGAAGCGCGTGGATACAAACGAGGGAGA
rJMSF042G06+          TGCGCCGGCGGACGCTAGTGCTAAGGAGGTGACGAAGCGCGTGGATACAAACGAGGGAGA
rJMSF052C09+          TGCGCCGGCGGACGCTAGTGCTAAGGAGGTGACGAAGCGCGTGGATACAAACGAGGGAGA
                      ____________________________________________________________
consensus             TGCGCCGGCGGACGCTAGTGCTAAGGAGGTGACGAAGCGCGTGGATACAAACGAGGGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          GTGGAGTGACTGGAACTGGAGGACGGACGGGGACATAATGGTAAACGGAGCATTCTTCGT
rJMSF042G06+          GTGGAGTGACTGGAACTGGAGGACGGACGGGGACATAATGGTAAACGGAGCATTCTTCGT
rJMSF052C09+          GTGGAGTGACTGGAACTGGAGGACGGACGGGGACATAATGGTAAACGGAGCATTCTTCGT
                      ____________________________________________________________
consensus             GTGGAGTGACTGGAACTGGAGGACGGACGGGGACATAATGGTAAACGGAGCATTCTTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          GCCTTCCGGCGACGGCGCGCGCGTGACCGGGCAATACGCAAAGGCCTCCAGCCTGGAGCC
rJMSF042G06+          GCCTTCCGGCGACGGCGCGCGCGTGACCGGGCAATACGCAAAGGCCTCCAGCCTGGAGCC
rJMSF052C09+          GCCTTCCGGCGACGGCGCGCGCGTGACCGGGCAATACGCAAAGGCCTCCAGCCTGGAGCC
                      ____________________________________________________________
consensus             GCCTTCCGGCGACGGCGCGCGCGTGACCGGGCAATACGCAAAGGCCTCCAGCCTGGAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          GAAGTCGGCGGAGCTCGTCGACCGGATCACCATGAACGCCGGTTGCCTCGGCGGATCCAG
rJMSF042G06+          GAAGTCGGCGGAGCTCGTCGACCGGATCACCATGAACGCCGGTTGCCTCGGCGGATCCAG
rJMSF052C09+          GAAGTCGGCGGAGCTCGTCGACCGGATCACCATGAACGCCGGTTGCCTCGGCGGATCCAG
                      ____________________________________________________________
consensus             GAAGTCGGCGGAGCTCGTCGACCGGATCACCATGAACGCCGGTTGCCTCGGCGGATCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          GGACAACAACATGTATGGAGGGACAACTACCAGCACAAGCCAGTCGCACAGTAGTGGTGA
rJMSF042G06+          GGACAACAACATGTATGGAGGGACAACTACCAGCACAAGCCAGTCGCACAGTAGTGGTGA
rJMSF052C09+          GGACAACAACATGTATGGAGGGACAACTACCAGCACAAGCCAGTCGCACAGTAGTGGTGA
                      ____________________________________________________________
consensus             GGACAACAACATGTATGGAGGGACAACTACCAGCACAAGCCAGTCGCACAGTAGTGGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          CGACTTCTTTGGGATGATATTTGGGAGCGGCGCTAAAGCA-TCGCCCCCTACCCCAACCA
rJMSF042G06+          CGACTTCTTTGGGATGATATTTGGGAGCGGCGCTAAAGCA-TCGCCCCCTACCCCAACCA
rJMSF052C09+          CGACTTCTTTGGGATGATATTTGGGAGCGGCGCTAAAGCATTCGCCCCCTACCCCAACCA
                      ____________________________________________________________
consensus             CGACTTCTTTGGGATGATATTTGGGAGCGGCGCTAAAGCA-TCGCCCCCTACCCCAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          CCACCATCTTTTTGTCTGTTCTAATTATTTCAGTTTTGTACATTTGCTCCAATGGAGCTG
rJMSF042G06+          CCACCATCTTTTTGTCTGTTCTAATTATTTCAGTTTTGTACATTTGCTCCAATGGAGCTG
rJMSF052C09+          CCACCATCTTTTTGTCTGTTCTAATTATTTCAGTTTTGTACATTTGCTCCAATGGAGCTG
                      ____________________________________________________________
consensus             CCACCATCTTTTTGTCTGTTCTAATTATTTCAGTTTTGTACATTTGCTCCAATGGAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051B07+          GGCAATTGTGACAAAC                                            
rJMSF042G06+          GGCAATTGTGACAAACATTGTAATTATTGATGTAAAAAATCAAGAAAAATATTAT     
rJMSF052C09+          GGCAATTGTGACAAACATTGTAATTATTGATGTAAAAAATCAAGAAAAATATTATTGTCA
                      ____________________________________________________________
consensus             GGCAATTGTGACAAACATTGTAATTATTGATGTAAAAAATCAAGAAAAATATTATTGTCA