Contig 012786:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003C10Sequence298006468 (4)ref|XP_009616399.1|2e-05PREDICTED: protein SAND-like isoform X2 [Nicotiana tomentosiformis]726012786 (3)gb|AIK35211.1|3e-97SAND family protein, partial [Camellia sinensis]
JMSF016N09Sequence466006468 (4)ref|XP_009616399.1|2e-06PREDICTED: protein SAND-like isoform X2 [Nicotiana tomentosiformis]701012786 (3)gb|AIK35211.1|4e-96SAND family protein, partial [Camellia sinensis]
JMSF051H20Sequence602006468 (4)ref|XP_009798422.1|2e-15PREDICTED: protein SAND-like isoform X3 [Nicotiana sylvestris]748012786 (3)gb|AIK35211.1|2e-98SAND family protein, partial [Camellia sinensis]

Alignment

This contig is upended


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rJMSF003C10+                                          AGCGAAGTTCAAAGATCGATGGTAGATG
rJMSF016N09+                                             GAAGTTCAAAGATCGATGGTAGATG
rJMSF051H20+                                             GAAGTTCAAAGATCGATGGTAGATG
                      ____________________________________________________________
consensus                                             AGCGAAGTTCAAAGATCGATGGTAGATG
 
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rJMSF003C10+          GTGGCNTGCGTGTTGAGGATTTGCCTGTTGATCCTGGTATCCGCTCTGGATCTGTATCCC
rJMSF016N09+          GTGGCATGCGTGTTGAGGATTTGCCTGTTGATCCTGGTATCCGCTCTGGATCTGTATCCC
rJMSF051H20+          GTGGCATGCGTGTTGAGGATTTGCCTGTTGATCCTGGTATCCGCTCTGGATCTGTATCCC
                      ____________________________________________________________
consensus             GTGGCATGCGTGTTGAGGATTTGCCTGTTGATCCTGGTATCCGCTCTGGATCTGTATCCC
 
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rJMSF003C10+          CTCATCTGGGTCAGCCAAGACCAACAACAGGGCACACGGAAAATATTAGGGACGCATTTT
rJMSF016N09+          CTCATCTGGGTCAGCCAAGACCAACAACAGGGCACACGGAAAATATTAGGGACGCATTTT
rJMSF051H20+          CTCATCTGGGTCAGCCAAGACCAACAACAGGGCACACGGAAAATATTAGGGACGCATTTT
                      ____________________________________________________________
consensus             CTCATCTGGGTCAGCCAAGACCAACAACAGGGCACACGGAAAATATTAGGGACGCATTTT
 
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rJMSF003C10+          TCGGTACTGGAGGTCCTGCTGGGCTTTGGCATTTCATGTATCGTAGTATATTTCTTGACC
rJMSF016N09+          TCGGTACTGGAGGTCCTGCTGGGCTTTGGCATTTCATGTATCGTAGTATATTTCTTGACC
rJMSF051H20+          TCGGTACTGGAGGTCCTGCTGGGCTTTGGCATTTCATGTATCGTAGTATATTTCTTGACC
                      ____________________________________________________________
consensus             TCGGTACTGGAGGTCCTGCTGGGCTTTGGCATTTCATGTATCGTAGTATATTTCTTGACC
 
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rJMSF003C10+          AGTATGTGTCCTCAGAATTTTCGTCGCCAATAACTACCTCTAAACAGCAGAAAAGATTGT
rJMSF016N09+          NGTATGTGTCCTCAGAATTTTCGTCGCCAATAACTACCTNTAAACAGCAGAAAAGATTGT
rJMSF051H20+          AGTATGTGTCCTCAGAATTTTCGTCGCCAATAACTACCTCTAAACAGCAGAAAAGATTGT
                      ____________________________________________________________
consensus             AGTATGTGTCCTCAGAATTTTCGTCGCCAATAACTACCTCTAAACAGCAGAAAAGATTGT
 
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rJMSF003C10+          ATAGAGCTTACCAAAAGCTTTACTCGTCAATGCATGACAAAGAAATTGGGCCTCACAGAA
rJMSF016N09+          ATAGAGCTTACCAAAAGCTTTACTCGTCAATGCATGACAAAGAAATTGGGCCTCACAGAA
rJMSF051H20+          ATAGAGCTTACCAAAAGCTTTACTCGTCAATGCATGACAAAGAAATTGGGCCTCACAGAA
                      ____________________________________________________________
consensus             ATAGAGCTTACCAAAAGCTTTACTCGTCAATGCATGACAAAGAAATTGGGCCTCACAGAA
 
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rJMSF003C10+          CTCAGTTTAGAAGGGACCAGAACTATGTTCTTCTCTGTTGGGTTACNCCGGATTTTGAGC
rJMSF016N09+          CTCAGTTTAGAAGGGACCAGAACTATGTTCTTCTCTGTTGGGTTACNCCGGATTTTGAGC
rJMSF051H20+          CTCAGTTTAGAAGGGACCAGAACTATGTTCTTCTCTGTTGGGTTACNCCGGATTTTGAGC
                      ____________________________________________________________
consensus             CTCAGTTTAGAAGGGACCAGAACTATGTTCTTCTCTGTTGGGTTACNCCGGATTTTGAGC
 
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rJMSF003C10+          TTTATGCGGCATTTGATCCTCTTGCAGACAAGGCTTTGGCNATAAAGATTTGCAATCGCA
rJMSF016N09+          TTTATGCGGCATTTGATCCTCTTGCAGACAAGGCTTTGGCAATAAAGATTTGCAATCGCA
rJMSF051H20+          TTTATGCGGCATTTGATCCTCTTGCAGACAAGGCTTTGGCAATAAAGATTTGCAATCGCA
                      ____________________________________________________________
consensus             TTTATGCGGCATTTGATCCTCTTGCAGACAAGGCTTTGGCAATAAAGATTTGCAATCGCA
 
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rJMSF003C10+          TCTGTCAATGGGTGAAGGATGTCGAGAATGAAATTTTCTTGCTGGGAGCGAGCCCGTTTT
rJMSF016N09+          TCTGTCAATGGGTGAAGGATGTCGAGAATGAAATTTTCTTGCTGGGAGCGAGCCCGTTTT
rJMSF051H20+          TCTGTCAATGGGTGAAGGATGTCGAGAATGAAATTTTCTTGCTGGGAGCGAGCCCGTTTT
                      ____________________________________________________________
consensus             TCTGTCAATGGGTGAAGGATGTCGAGAATGAAATTTTCTTGCTGGGAGCGAGCCCGTTTT
 
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rJMSF003C10+          CATGGTAATTCACCCAAAATATATGTTTCTACNTGCNTTGTAGCATTTTTTTTTTCTCCA
rJMSF016N09+          CATGGTAATTCACCCAAAATATATGTTTCTACNTGCNTTGTAGCATTTTTTTTTTCTCCA
rJMSF051H20+          CATGGTAATTCACCCAAAATATATGTTTCTACATGCATTGTAGCATTTTTTTTTTCTCCA
                      ____________________________________________________________
consensus             CATGGTAATTCACCCAAAATATATGTTTCTACATGCATTGTAGCATTTTTTTTTTCTCCA
 
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rJMSF003C10+          ATAAATTTCTGCCTTACTTTTTGATAGGCACCATAGTTTATATTAACCTCCTTATCATGG
rJMSF016N09+          ATAAATTTCTGCCTTACTTTTTGATAGGCACCATAGTTTATATTAACCTCCTTATCATGG
rJMSF051H20+          ATAAATTTCTGCCTTACTTTTTGATAGGCACCATAGTTTATATTAACCTCCTTATCATGG
                      ____________________________________________________________
consensus             ATAAATTTCTGCCTTACTTTTTGATAGGCACCATAGTTTATATTAACCTCCTTATCATGG
 
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rJMSF003C10+          GAATTGTAATGTCTAAATTTTGGAGTTATTCAGTTTAATATAACTCTAGGGATCATAATT
rJMSF016N09+          GAATTGTAATGTCTAAATTTTGGAGTTATTCAGTTTAATATAACTCTAGGGATCATAATT
rJMSF051H20+          GAATTGTAATGTCTAAATTTTGGAGTTATTCAGTTTAATATAACTCTAGGGATCATAATT
                      ____________________________________________________________
consensus             GAATTGTAATGTCTAAATTTTGGAGTTATTCAGTTTAATATAACTCTAGGGATCATAATT
 
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rJMSF003C10+          TACATGTATCAGCTATATATATTCCAATTCAGAAAAGT                      
rJMSF016N09+          TAC                                                         
rJMSF051H20+          TACATGTATCAGCTATATATATTCCAATTCAGAAAAGTTGGATACTTACACGATTCTCTG
                      ____________________________________________________________
consensus             TACATGTATCAGCTATATATATTCCAATTCAGAAAAGTTGGATACTTACACGATTCTCTG