| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002M05 | Sequence | 356 | 001618 (5) | ref|XP_009790737.1| | 83.2 | PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris] | 653 | 012785 (3) | ref|XP_006366766.1| | 2e-51 | PREDICTED: transmembrane 9 superfamily member 4-like [Solanum tuberosum] |
| JMFF013L06 | Sequence | 517 | 001618 (5) | ref|XP_009790737.1| | 176 | PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris] | 753 | 012785 (3) | ref|XP_004243223.1| | 296 | PREDICTED: transmembrane 9 superfamily member 4 [Solanum lycopersicum] |
| JMSF051G21 | Sequence | 651 | 001618 (5) | ref|XP_009790737.1| | 268 | PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris] | 741 | 012785 (3) | ref|XP_009602688.1| | 211 | PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF013L06+ CGAGCTGAGGCTATACA
____________________________________________________________
consensus CGAGCTGAGGCTATACA
. : . : . : . : . : . :
rJMFF013L06+ GTACCCAGTGCGAACTAACCAAATTCCTAGGGAGATCCCATCGCGCAAATATCCATCATG
____________________________________________________________
consensus GTACCCAGTGCGAACTAACCAAATTCCTAGGGAGATCCCATCGCGCAAATATCCATCATG
. : . : . : . : . : . :
rJMFF013L06+ GCTTCTTATCCTTGGAGCTGGAACCCTCCCATTTGGAACACTCTTCATTGAACTTTTCTT
rJMSF051G21+ CACTCTTCATTGAACTTTTCTT
____________________________________________________________
consensus GCTTCTTATCCTTGGAGCTGGAACCCTCCCATTTGGAACACTCTTCATTGAACTTTTCTT
. : . : . : . : . : . :
rJMFF013L06+ TATCCTCTCTAGTATCTGGCTTGGACGGTTCTACTATGTGTTTGGTTTTCTCTTCATTGT
rJMFF002M05+ TTTCTCTTCATTGT
rJMSF051G21+ TATCCTCTCTAGTATCTGGCCTGGACGGTTCTACTATGTGTTTGGTTTTCTCTTCATTGT
____________________________________________________________
consensus TATCCTCTCTAGTATCTGGCTTGGACGGTTCTACTATGTGTTTGGTTTTCTCTTCATTGT
. : . : . : . : . : . :
rJMFF013L06+ TCTCCTGCTCCTGGTCATTATCTGTGCCGAGGTCTCACTTGTCCTCACTTACATGCATCT
rJMFF002M05+ TCTCCTGCTCCTGGTCATTATCTGTGCCGAGGTCTCACTTGTCCTCACTTACATGCATCT
rJMSF051G21+ TCTCCTGCTCCTGGTCATTATCTGTGCCGAGGTCTCACTTGTCCTCACTTACATGCATCT
____________________________________________________________
consensus TCTCCTGCTCCTGGTCATTATCTGTGCCGAGGTCTCACTTGTCCTCACTTACATGCATCT
. : . : . : . : . : . :
rJMFF013L06+ CTGCGTCGAGGATTGGATGTGGTGGTGGAAAGCATTCTATGCCTCGGGTTCAGTCTCTCT
rJMFF002M05+ CTGCGTCGAGGATTGGATGTGGTGGTGGAAAGCATTCTATGCCTCGGGTTCAGTCTCTCT
rJMSF051G21+ CTGCGTCGAGGATTGGATGTGGTGGTGGAAAGCATTCTATGCCTCGGGTTCAGTCTCTCT
____________________________________________________________
consensus CTGCGTCGAGGATTGGATGTGGTGGTGGAAAGCATTCTATGCCTCGGGTTCAGTCTCTCT
. : . : . : . : . : . :
rJMFF013L06+ GTACGTGTTCTTGTATTCCGTTAATTACTTAGTCTTTGACCTCCAGAGCCTGAGCGGGCC
rJMFF002M05+ GTACGTGTTCTTGTATTCCGTTAATTACTTAGTCTTTGACCTCCAGAGCCTGAGCGGGCC
rJMSF051G21+ GTACGTGTTCTNGTATTCCGTTAATTACTTAGTCTTTGACCTCCAGAGCCTGAGCGGGCC
____________________________________________________________
consensus GTACGTGTTCTTGTATTCCGTTAATTACTTAGTCTTTGACCTCCAGAGCCTGAGCGGGCC
. : . : . : . : . : . :
rJMFF013L06+ AGTGTCTGCTATACTGTATCTCGGCTATTCACTCATAATGGCAGTTGCAGTCATGCTCGC
rJMFF002M05+ AGTGTCTGCTATACTGTATCTCGGCTATTCACTCATAATGGCAGTTGCAGTCATGCTCGC
rJMSF051G21+ AGTGTCTGCTATACTGTATCTCGGCTATTCACTCATAATGGCAGTTGCAGTCATGCTCGC
____________________________________________________________
consensus AGTGTCTGCTATACTGTATCTCGGCTATTCACTCATAATGGCAGTTGCAGTCATGCTCGC
. : . : . : . : . : . :
rJMFF013L06+ TACTGGCACCATCGGTCTTCTCACTTCGTTTTACTTCGTTCATTACCTCTTCTCCTCGGT
rJMFF002M05+ TACTGGCACCATCGGTCTTCTCACTTCGTTTTACTTCGTTCATTACCTCTTCTCCTCGGT
rJMSF051G21+ TACTGGCACCATCGGTCTTCTCACTTCGTTTTACTTCGTTCATTACCTCTTCTCCTCGGT
____________________________________________________________
consensus TACTGGCACCATCGGTCTTCTCACTTCGTTTTACTTCGTTCATTACCTCTTCTCCTCGGT
. : . : . : . : . : . :
rJMFF013L06+ GAAGATTGACTGAGGGGGGA-TTTAGATAGCCGATTCTTGACAGCGAGAGAGAAAGCTTT
rJMFF002M05+ GAAGATTGACTGAGGGGGGATTTTAGATAGCCGATTCTTGACAGCGAGAGAGAAAGCTTT
rJMSF051G21+ GAAGATTGACTGAGGGGGGA-TTTAGATAGCCGATTCTTGACAGCGAGAGAGAAAGCTTT
____________________________________________________________
consensus GAAGATTGACTGAGGGGGGA-TTTAGATAGCCGATTCTTGACAGCGAGAGAGAAAGCTTT
. : . : . : . : . : . :
rJMFF013L06+ AGTGCTCATTTTCTCACGCTGTGGTTACGTTGCCAAATGAGAGATTCTTAGAAGCTGGTT
rJMFF002M05+ AGTGCTCATTTTCTCACGCTGTGGTTACGTTGCCAAATGAGAGATTCTTAGAAGCTGGTT
rJMSF051G21+ AGTGCTCATTTTCTCACGCTGTGGTTACGTTGCCAAATGAGAGATTCTTAGAAGCTGGTT
____________________________________________________________
consensus AGTGCTCATTTTCTCACGCTGTGGTTACGTTGCCAAATGAGAGATTCTTAGAAGCTGGTT
. : . : . : . : . : . :
rJMFF013L06+ GGGGCTGAAGGCCTGGCCTGGCCTGCTAGCTAAGATATAATTCTTTTTCTTGATACTCTG
rJMFF002M05+ GGGGCTGAAGGCCTGGCCTGGCCTGCTAGCTAAGATATAATTCTTTTTCTTGATACTCTG
rJMSF051G21+ GGGGCTGAAGGCCTGGCCTGGCCTGCTAGCTAAGATATAATTCTTTTTCTTGATACTCTG
____________________________________________________________
consensus GGGGCTGAAGGCCTGGCCTGGCCTGCTAGCTAAGATATAATTCTTTTTCTTGATACTCTG
. : . : . : . : . : . :
rJMFF013L06+ GATGCTAAAAATGTTTCATTTGTATCGGTTTTAATGTGGTGTTTAATGCCTGGTGGTCAA
rJMFF002M05+ GATGCTAAAAATGTTTCATTTGTATCGGTTTTAATGTGGTGTTTAATGCCTGGTGGTCAA
rJMSF051G21+ GATGCTAAAAATGTTTCATTTGTATCGGTTTTAATGTGGTGTTTAATGCCTGGTGGTCAA
____________________________________________________________
consensus GATGCTAAAAATGTTTCATTTGTATCGGTTTTAATGTGGTGTTTAATGCCTGGTGGTCAA
. : . : . : . : . : . :
rJMFF013L06+ TGTATTCTGCGTTTTCT
rJMFF002M05+ TGTATTCTGCGTTTTCTTCATCTTTCTGCATTTAAGTTTTGTGTAGCTTCGTCCATTCCA
rJMSF051G21+ TGTATTCTGCGTTTTCTTCATCTTTCTGCANTTAAGTTTTGTGTAGCTTCGTCCATTCCA
____________________________________________________________
consensus TGTATTCTGCGTTTTCTTCATCTTTCTGCATTTAAGTTTTGTGTAGCTTCGTCCATTCCA
. : . : . : . : . : . :
rJMFF002M05+ CTTGTTTTGGAC
rJMSF051G21+ CTTGTTTTGGACCANGTATNGAAACGCGCATATTGTAGTTAAATGTTTGATAGATCGAGC
____________________________________________________________
consensus CTTGTTTTGGACCANGTATNGAAACGCGCATATTGTAGTTAAATGTTTGATAGATCGAGC