Contig 012784:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF051E22Sequence666012784 (2)ref|XP_010249578.1|4e-48PREDICTED: dehydration-responsive element-binding protein 3-like [Nelumbo nucif760012784 (2)ref|XP_010249578.1|1e-51PREDICTED: dehydration-responsive element-binding protein 3-like [Nelumbo nucif

Alignment

This contig is upended


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JMSF051E22-                                                                   GGTC
                      ____________________________________________________________
consensus                                                                     GGTC
 
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JMSF051E22-           ATCTCTCATTCTCTCCCCCCTTATTATAAGTGTTGCATGACTCCTAGGGAAGCTCAAGCT
                      ____________________________________________________________
consensus             ATCTCTCATTCTCTCCCCCCTTATTATAAGTGTTGCATGACTCCTAGGGAAGCTCAAGCT
 
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JMSF051E22-           CAAGCTCAACCTCCCTCATTCATTCATTCTACCACCAACATATTATATATATACACACTT
                      ____________________________________________________________
consensus             CAAGCTCAACCTCCCTCATTCATTCATTCTACCACCAACATATTATATATATACACACTT
 
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JMSF051E22-           CCATATATCTATATACTCAGGTCTGGGAGTGCATGATATATATATATTTTTGATCCATCT
                      ____________________________________________________________
consensus             CCATATATCTATATACTCAGGTCTGGGAGTGCATGATATATATATATTTTTGATCCATCT
 
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JMSF051E22-           ATATATATATCACAGTAGAGATCAGATGAGTTCAGACCCACCAGATTGCAGTTCAAGCTC
                      ____________________________________________________________
consensus             ATATATATATCACAGTAGAGATCAGATGAGTTCAGACCCACCAGATTGCAGTTCAAGCTC
 
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JMSF051E22-           AGAAGTAGCTTGCGAGTCAACTCGGGCGGTTCTTGACTCGGGGTCTGCAGAAAAGGAAGA
                      ____________________________________________________________
consensus             AGAAGTAGCTTGCGAGTCAACTCGGGCGGTTCTTGACTCGGGGTCTGCAGAAAAGGAAGA
 
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JMSF051E22-           ACCGAAGAAGATGACGATGAAGAGAAGCCGGGATAATAGTTGCAGTAAACATCCGGTGTA
                      ____________________________________________________________
consensus             ACCGAAGAAGATGACGATGAAGAGAAGCCGGGATAATAGTTGCAGTAAACATCCGGTGTA
 
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JMSF051E22-           CCGGGGAGTTAGTATGAGGAACTGGGGAAAATGGGTTTCCGAAATCCGGGAGCCCCGGAA
rJMSF051E22+                                              TTCCGAAATCCGGGAGCCCCGGAA
                      ____________________________________________________________
consensus             CCGGGGAGTTAGTATGAGGAACTGGGGAAAATGGGTTTCCGAAATCCGGGAGCCCCGGAA
 
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JMSF051E22-           GAAATCGCGCATTTGGCTTGGGACCTTCTCTAACCCGGAAATGGCGGCCAGGGCACACGA
rJMSF051E22+          GAAATCGCGCATTTGGCTTGGGACCTTCTCTAACCCGGAAATGGCGGCCAGGGCACACGA
                      ____________________________________________________________
consensus             GAAATCGCGCATTTGGCTTGGGACCTTCTCTAACCCGGAAATGGCGGCCAGGGCACACGA
 
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JMSF051E22-           CGTCGCCGCTCTGAGCATCAAGGGCAATTCCGCCGTGCTCAATTTCCCCGACCTGGCCGC
rJMSF051E22+          CGTCGCCGCTCTGAGCATCAAGGGCAATTCCGCCGTGCTCAATTTCCCCGACCTGGCCGC
                      ____________________________________________________________
consensus             CGTCGCCGCTCTGAGCATCAAGGGCAATTCCGCCGTGCTCAATTTCCCCGACCTGGCCGC
 
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JMSF051E22-           CGCGCTGCCCCGCCCGGCGTCGCTCACGCCGCGGGACATTCAAGTGGCTGCCGCTAAAGC
rJMSF051E22+          CGCGCTGCCCCGCCCGGCGTCGCTCACGCCGCGGGACATTCAAGTGGCTGCCGCTAAAGC
                      ____________________________________________________________
consensus             CGCGCTGCCCCGCCCGGCGTCGCTCACGCCGCGGGACATTCAAGTGGCTGCCGCTAAAGC
 
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JMSF051E22-           GGCGGCGATGGAGAAATTTGACCCCGTATCTTCTCCGTCGCCGTCTCCGTCCTCCTCGTG
rJMSF051E22+          GGCGGCGATGGAGAAATTTGACCCCGTATCTTCTCCGTCGCCGTCTCCGTCCTCCTCGTG
                      ____________________________________________________________
consensus             GGCGGCGATGGAGAAATTTGACCCCGTATCTTCTCCGTCGCCGTCTCCGTCCTCCTCGTG
 
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JMSF051E22-           TT                                                          
rJMSF051E22+          TTCGTCGGAGATAGACCCGGCGACGTCGGAGGAGCTGAGCGAAATCGTGGAGCTGCCGAG
                      ____________________________________________________________
consensus             TTCGTCGGAGATAGACCCGGCGACGTCGGAGGAGCTGAGCGAAATCGTGGAGCTGCCGAG
 
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rJMSF051E22+          GCTGGGCACGAGTTTCGACTCGCCCGAGGTGGGGAGCGAGTTCGTGTACGTTGACTCGGT
                      ____________________________________________________________
consensus             GCTGGGCACGAGTTTCGACTCGCCCGAGGTGGGGAGCGAGTTCGTGTACGTTGACTCGGT
 
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rJMSF051E22+          GGACGGGTGGCTGTACCCGCCGCCGTGGCTCGGCAGCGGCGCGGACGACGACGATAGTAG
                      ____________________________________________________________
consensus             GGACGGGTGGCTGTACCCGCCGCCGTGGCTCGGCAGCGGCGCGGACGACGACGATAGTAG
 
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rJMSF051E22+          CAGTTTTGAGTCTCTGTTATGGAATTATTAGCTTTCGGTCCCTGTGTGAGGTTTTTGTTT
                      ____________________________________________________________
consensus             CAGTTTTGAGTCTCTGTTATGGAATTATTAGCTTTCGGTCCCTGTGTGAGGTTTTTGTTT
 
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rJMSF051E22+          TCTCTTTCAACCCTTTTATTTTTGTGTATTTACGTTATCTTAGCCGTTCAAATTTTTGTG
                      ____________________________________________________________
consensus             TCTCTTTCAACCCTTTTATTTTTGTGTATTTACGTTATCTTAGCCGTTCAAATTTTTGTG
 
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rJMSF051E22+          TGAAGGGCTTGCAAATTTCACGATTCCTAATTACCTCCCAATATTCTCTCCTCTTGTCTT
                      ____________________________________________________________
consensus             TGAAGGGCTTGCAAATTTCACGATTCCTAATTACCTCCCAATATTCTCTCCTCTTGTCTT
 
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rJMSF051E22+          TGTTGGTGTAATGACATCTCTTCCTTCTTATGACAGTCTAACTGCACAGTGTTAGAAAGG
                      ____________________________________________________________
consensus             TGTTGGTGTAATGACATCTCTTCCTTCTTATGACAGTCTAACTGCACAGTGTTAGAAAGG
 
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rJMSF051E22+          TTGAGAAAAATGTCATAAATGCATTCCCATGGTTTGGTATATGTATATATTAGTGTGTGG
                      ____________________________________________________________
consensus             TTGAGAAAAATGTCATAAATGCATTCCCATGGTTTGGTATATGTATATATTAGTGTGTGG