Contig 012783:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028P18Sequence652010581 (9)ref|XP_002321240.1|2e-110serine carboxypeptidase S10 family protein [Populus trichocarpa] gb|EEE99555.1| 717012783 (3)ref|XP_006358849.1|2e-77PREDICTED: agamous-like MADS-box protein AGL19-like [Solanum tuberosum]
JMSF051D21Sequence647012783 (3)ref|XP_011081162.1|3e-56PREDICTED: MADS-box protein SOC1 [Sesamum indicum]682012783 (3)ref|XP_006358849.1|5e-42PREDICTED: agamous-like MADS-box protein AGL19-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF051D21-                       GATTAGGGGTAAGGGACCAGCAAACTGCAAAACACCATAAATATCCAT
                      ____________________________________________________________
consensus                         GATTAGGGGTAAGGGACCAGCAAACTGCAAAACACCATAAATATCCAT
 
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JMSF051D21-           CCACCTCTCTCTCTCTTCTTCTTCTTCTTCTTAAAAAAGAAATTCTAGACAACATATTTC
                      ____________________________________________________________
consensus             CCACCTCTCTCTCTCTTCTTCTTCTTCTTCTTAAAAAAGAAATTCTAGACAACATATTTC
 
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JMSF051D21-           TCTTTCTTATTACCCATTTTAGGGTTTTCTGATGAAGAATCCATTCTTACCTCCCAGACT
                      ____________________________________________________________
consensus             TCTTTCTTATTACCCATTTTAGGGTTTTCTGATGAAGAATCCATTCTTACCTCCCAGACT
 
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JMSF051D21-           TTTGTTTTCCATCTCTCAGATCTGAAGAAACCCAGAAAAGTTCCAGTGAGCATTACAGTA
rJMSF028P18+                                           AGAAAAGTTCCAGTGAGCATTNCAGTA
                      ____________________________________________________________
consensus             TTTGTTTTCCATCTCTCAGATCTGAAGAAACCCAGAAAAGTTCCAGTGAGCATTACAGTA
 
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JMSF051D21-           AAGGAAGAAGAAGAAAATGGTAAGGGGAAAAACTGAGATGAAAAGGATAGAGAATGCTAC
rJMSF028P18+          AAGGAAGAAGAAGAAAATNGTAAGGGGAAAAACTGAGATGAAAAGGATAGAGAATGCTAC
                      ____________________________________________________________
consensus             AAGGAAGAAGAAGAAAATGGTAAGGGGAAAAACTGAGATGAAAAGGATAGAGAATGCTAC
 
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JMSF051D21-           AAGCAGGCAAGTTACTTTCTCCAAGAGGAGAAGTGGGCTTCTCAAAAAGGCTTTTGAGCT
rJMSF028P18+          AAGCAGGCAAGTTACTTTCTCCAAGAGGAGAAGTGGGCTTCTCAAAAAGGCTTTTGAGCT
                      ____________________________________________________________
consensus             AAGCAGGCAAGTTACTTTCTCCAAGAGGAGAAGTGGGCTTCTCAAAAAGGCTTTTGAGCT
 
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JMSF051D21-           CTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCGTCTTCTCCCCTAAAGGAAAGCTCTA
rJMSF028P18+          CTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCGTCTTCTCCCCTAAAGGAAAGCTCTA
rJMSF051D21+                                                TCTCCCCTAAAGGAAAGCTCTA
                      ____________________________________________________________
consensus             CTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCGTCTTCTCCCCTAAAGGAAAGCTCTA
 
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JMSF051D21-           TGAGTTCTCCAGCTCCAGCAGCCCTAGCAAGACGATAGAACGCTACGAAACGAATTCCAA
rJMSF028P18+          TGAGTTCTCCAGCTCCAGCAGCCCTAGCAAGACGATAGAACGCTACGAAACGAATTCCAA
rJMSF051D21+          TGAGTTCTCCAGCTCCAGCAGCCCTAGCAAGACGATAGAACGCTACGAAACGAATTCCAA
                      ____________________________________________________________
consensus             TGAGTTCTCCAGCTCCAGCAGCCCTAGCAAGACGATAGAACGCTACGAAACGAATTCCAA
 
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JMSF051D21-           GAACATGGGAGTCCACAAAAGAACAGTTGAACAAAATATACAGCATTTCAAAGAAGAGAT
rJMSF028P18+          GAACATGGGAGTCCACAAAAGAACAGTTGAACAAAATATACAGCATTTCAAAGAAGAGAT
rJMSF051D21+          GAACATGGGAGTCCACAAAAGAACAGTTGAACAAAATATACAGCATTTCAAAGAAGAGAT
                      ____________________________________________________________
consensus             GAACATGGGAGTCCACAAAAGAACAGTTGAACAAAATATACAGCATTTCAAAGAAGAGAT
 
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JMSF051D21-           TGCTACAATGAGCAGAAATGTAGATCTTCTTGAAAACACCAAAAGAAAGCTTCTGGGGGA
rJMSF028P18+          TGCTACAATGAGCAGAAATGTAGATCTTCTTGAAAACACCAAAAGAAAGCTTCTGGGGGA
rJMSF051D21+          TGCTACAATGAGCAGAAATGTAGATCTTCTTGAAAACACCAAAAGAAAGCTTCTGGGGGA
                      ____________________________________________________________
consensus             TGCTACAATGAGCAGAAATGTAGATCTTCTTGAAAACACCAAAAGAAAGCTTCTGGGGGA
 
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JMSF051D21-           AGGTTTAGAATCTTGCTCTACTGATGAGCTGCAACAGATAGAAGAGCAGTTGGAGCAAA 
rJMSF028P18+          AGGTTTAGAATCTTGCTCTACTGATGAGCTGCAGCAGATAGAAGAGCAGTTGGAGCAAAG
rJMSF051D21+          AGGTTTAGAATCTTGCTCTACTGATGAGCTGCAACAGATAGAAGAGCAGTTGGAGCAAAG
                      ____________________________________________________________
consensus             AGGTTTAGAATCTTGCTCTACTGATGAGCTGCAACAGATAGAAGAGCAGTTGGAGCAAAG
 
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rJMSF028P18+          CTTGAGCAACATTAGAGCAAGAAAGAATTTTATATACAAGGAAAGAATTACTAAGCTAAA
rJMSF051D21+          CTTGAGCAACATTAGAGCAAGAAAGAATTTTATATACAAGGAAAGAATTACTAAGCTAAA
                      ____________________________________________________________
consensus             CTTGAGCAACATTAGAGCAAGAAAGAATTTTATATACAAGGAAAGAATTACTAAGCTAAA
 
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rJMSF028P18+          GGAAGAGGAAGAAACCCTAAGAAGGCATAATGCTGAATTGAGGAAAAGGCTTGAAGTAAA
rJMSF051D21+          GGAAGAGGAAGAAACCCTAAGAAGGCATAATGCTGAATTGAGGAAAAGGCTTGAAGTAAA
                      ____________________________________________________________
consensus             GGAAGAGGAAGAAACCCTAAGAAGGCATAATGCTGAATTGAGGAAAAGGCTTGAAGTAAA
 
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rJMSF028P18+          ATCCTTGACTCTCTCAACAGTACAACAAGATATTGATCCCCAGCAGAAAATAATGGAAGT
rJMSF051D21+          ATCCTTGACTCTCTCAACAGTACAACAAGATATTGATCCCCAACAGAAAATAATGGAAGT
                      ____________________________________________________________
consensus             ATCCTTGACTCTCTCAACAGTACAACAAGATATTGATCCCCAGCAGAAAATAATGGAAGT
 
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rJMSF028P18+          GGAGACACAACTATTTATTGGGCCTCCAGAAAGAAGCCCTCATTAGNGATTATTGTATTT
rJMSF051D21+          GGAGACACAACTATTTATTGGGCCTCCAGAAAGAAGCCCTCATTAGAGATTATTGTATTT
                      ____________________________________________________________
consensus             GGAGACACAACTATTTATTGGGCCTCCAGAAAGAAGCCCTCATTAGAGATTATTGTATTT
 
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rJMSF028P18+          TTATTTTCATGTTATTATTAATA                                     
rJMSF051D21+          TTATTTTCATGTTATTATTAATACTAGTGTGGTTTTCAAATTTAATATATATTTTTATGC
                      ____________________________________________________________
consensus             TTATTTTCATGTTATTATTAATACTAGTGTGGTTTTCAAATTTAATATATATTTTTATGC
 
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rJMSF051D21+          AGTTTATGAACCTCTAAAGTATGTGTAAGTTACAAGCTTTACTAATTACTACGGAGTATG
                      ____________________________________________________________
consensus             AGTTTATGAACCTCTAAAGTATGTGTAAGTTACAAGCTTTACTAATTACTACGGAGTATG
 
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rJMSF051D21+          AGTATGTGGACTACTAATCAACTAGATTATTCGTGACCAAGTTTAGTTGATTCGGGGTAT
                      ____________________________________________________________
consensus             AGTATGTGGACTACTAATCAACTAGATTATTCGTGACCAAGTTTAGTTGATTCGGGGTAT