Contig 012781:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027O04Sequence394010564 (6)693012781 (4)emb|CDP09504.1|1e-77unnamed protein product [Coffea canephora]
JMSF004L05Sequence426010564 (6)514012781 (4)ref|XP_006347894.1|9e-57PREDICTED: scarecrow-like protein 22-like [Solanum tuberosum]
JMSF016H16Sequence404010564 (6)768012781 (4)emb|CDP09504.1|2e-103unnamed protein product [Coffea canephora]
JMSF050P22Sequence708012781 (4)ref|XP_010325595.1|1e-75PREDICTED: scarecrow-like protein 22 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF016H16+                                        TGAGCATCGATTCGTTGNACTCAACTTCGT
                      ____________________________________________________________
consensus                                           TGAGCATCGATTCGTTGNACTCAACTTCGT
 
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rJMFF027O04+             CACTCCCACTTCATATCTCGGATAACGAAGCGATTGCTGTTAATCTCCCCGTTGGTT
rJMSF016H16+          GGTCACTCCCACTTCATATCTCGGATAACGAAGCGATTGCTGTTAATCTCCCCGTTGGTT
                      ____________________________________________________________
consensus             GGTCACTCCCACTTCATATCTCGGATAACGAAGCGATTGCTGTTAATCTCCCCGTTGGTT
 
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rJMFF027O04+          GCTTCACCACCTACCAACTATCGCACCCTTTGGTGCTTCGTTTCGTTAAGCAGTTGATGC
rJMSF016H16+          GCTTCACCACCTACCAACTATCGCACCCTTTGGTGCTTCGTTTCGTTAAGCAGTTGATGC
                      ____________________________________________________________
consensus             GCTTCACCACCTACCAACTATCGCACCCTTTGGTGCTTCGTTTCGTTAAGCAGTTGATGC
 
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rJMFF027O04+          CCAAGATTGTGGTTTCTGTAGACCGAGTTTGTGATCGGACCGACCTCCTATTCCCCCAAC
rJMSF016H16+          CCAAGATTGTGGTTTCTGTAGACCGAGTTTGTGATCGGACCGACCTCCTATT-CCCCAAC
rJMSF050P22+                     GTTTCTGTAGACCGAGTTNGTGATCGGACCGACCTCCTATT-CCCCAAC
                      ____________________________________________________________
consensus             CCAAGATTGTGGTTTCTGTAGACCGAGTTTGTGATCGGACCGACCTCCTATT-CCCCAAC
 
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rJMFF027O04+          CACGTAATCCACGCCCTTCAGTACTATGCCAACCTTCTCGAGTCTCTCGATGCTGTGAAT
rJMSF004L05+                                                      TCTCGATGCTGTGAAT
rJMSF016H16+          CACGTAATCCACGCCCTTCAGTACTATGCCAACCTTCTCGAGTCTCTCGATGCTGTGAAT
rJMSF050P22+          CACGTAATCCACGCCCTTCAGTACTATGCCAACCTTCTCGAGTCTCTCGATGCTGTGAAT
                      ____________________________________________________________
consensus             CACGTAATCCACGCCCTTCAGTACTATGCCAACCTTCTCGAGTCTCTCGATGCTGTGAAT
 
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rJMFF027O04+          GTGAACTTCGATGCCCTGCAGAAGATCGAGAGGTTCTTGCTCCATCCCGGGATCGAGAGA
rJMSF004L05+          GTGAACTTCGATGCCCTGCAGAAGATCGAGAGGTTCTTGCTCCATCCCGGGATCGAGAGA
rJMSF016H16+          GTGAACTTCGATGCCCTGCAGAAGATCGAGAGGTTCTTGCTCCATCCCGGGATCGAGAGA
rJMSF050P22+          GTGAACTTCGATGCCCTGCAGAAGATCGAGAGGTTCTTGCTCCATCCCGGGATCGAGAGA
                      ____________________________________________________________
consensus             GTGAACTTCGATGCCCTGCAGAAGATCGAGAGGTTCTTGCTCCATCCCGGGATCGAGAGA
 
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rJMFF027O04+          ATCATAATGGGCCGTTATCGTTCCCCCGAGAAAACACAGCACTGGAGGACTCTGTTCCTA
rJMSF004L05+          ATCATAATGGGCCGTTATCGTTCCCCCGAGGAAACACAGCACTGGAGGACTCTGTTCCTA
rJMSF016H16+          ATCATAATGGGCCGTTATCGTTCCCCCGAGAAAACACAGCACTGGAGGACTCTGTTCCTA
rJMSF050P22+          ATCATAATGGGCCGTTATCGTTCCCCCGAGAAAACACAGCACTGGAGGACTCTGTTCCTA
                      ____________________________________________________________
consensus             ATCATAATGGGCCGTTATCGTTCCCCCGAGAAAACACAGCACTGGAGGACTCTGTTCCTA
 
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rJMFF027O04+          TCGTCTGGATTCTCCCCATTGACTTTCAGCAATTTCACCGAGTCTCAAGCCGAGTGTGTG
rJMSF004L05+          TCGTCTGGATTCTCCCCATTGACTTTCAGCAATTTCACCGAGTCTCAAGCCGAGTGTGTG
rJMSF016H16+          TCGTCTGGATTCTCCCCATTGACTTTCAGCAATTTCACCGAGTCTCAAGCCGAGTGTGTG
rJMSF050P22+          TCGTCTGGATTCTCCCCATTGACTTTCAGCAATTTCACCGAGTCTCAAGCCGAGTGTGTG
                      ____________________________________________________________
consensus             TCGTCTGGATTCTCCCCATTGACTTTCAGCAATTTCACCGAGTCTCAAGCCGAGTGTGTG
 
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rJMFF027O04+          GTGAAAAGAACTCCGGTCCGAGGGTTCCATGTCGAGAAGAGACAATCTTCTCTCGTTCTT
rJMSF004L05+          GTGAAAAGAACTCCGGTCCGAGGGTTCCATGTCGAGAAGAGACAATCTTCTCTCGTTCTT
rJMSF016H16+          GTGAAAAGAACTCCGGTCCGAGGGTTCCATGTCGAGAAGAGACAATCTTCTCTCGTTCTT
rJMSF050P22+          GTGAAAAGAACTCCGGTCCGAGGGTTCCATGTCGAGAAGAGACAATCTTCTCTCGTTCTT
                      ____________________________________________________________
consensus             GTGAAAAGAACTCCGGTCCGAGGGTTCCATGTCGAGAAGAGACAATCTTCTCTCGTTCTT
 
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rJMFF027O04+          TGCTGGCAGCGGAAGGAGCTTATCTCGGTTTCAGCTTGGAGGTGCTGATCGAAGAAGAGC
rJMSF004L05+          TGCTGGCAGCGGAAGGAGCTTATCTCGGTTTCAGCTTGGAGGTGCTGATCGAAGAAGAGC
rJMSF016H16+          TGCTGGCAGCGGAAGGAGCTTATCTCGGTTTCAGCTTGGAGGTGCTGATCGAAGAAGAGC
rJMSF050P22+          TGCTGGCAGCGGAAGGAGCTTATCTCGGTTTCAGCTTGGAGGTGCTGATCGAAGAAGAGC
                      ____________________________________________________________
consensus             TGCTGGCAGCGGAAGGAGCTTATCTCGGTTTCAGCTTGGAGGTGCTGATCGAAGAAGAGC
 
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rJMFF027O04+          AGACCCGTTCGATATTTAATCCCGTTCCTGATTATGAAGGTGTCATAATTCACTGTTTTA
rJMSF004L05+          AGACCCGTTCGATATTTAATCCCGTTCCTGATTATGAAGGTGTCATAATTCACTGTTTTA
rJMSF016H16+          AGACCCGTTCGATATTTAATCCCGTTCCTGATTATGAAGGTGTCATAATTCACTGTTTTA
rJMSF050P22+          AGACCCGTTCGATATTTAATCCCGTTCCTGATTATGAAGGTGTCATAATTCACTGTTTTA
                      ____________________________________________________________
consensus             AGACCCGTTCGATATTTAATCCCGTTCCTGATTATGAAGGTGTCATAATTCACTGTTTTA
 
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rJMFF027O04+          GTATCTGAACATTTTCGATTTTCTTTTCTTGCCTATAGATTTTATTCGCTAATTGTCTTT
rJMSF004L05+          GTATCTGAACATTTTCGATTTTCTTTTCTTGCCTATAGATTTTATTCGCTAATTGTCTTT
rJMSF016H16+          GTATCTGAACATTTTCGATTTTCTTTTCTTGCCTATAGATTTTATTCGCTAATTGTCTTT
rJMSF050P22+          GTATCTGAACATTTTCGATTTTCTTTTCTTGCCTATAGATTTTATTCGCTAATTGTCTTT
                      ____________________________________________________________
consensus             GTATCTGAACATTTTCGATTTTCTTTTCTTGCCTATAGATTTTATTCGCTAATTGTCTTT
 
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rJMFF027O04+          TGTGGCCTAGTCAGATTGTTTCAAAGTAAGGAAAAT                        
rJMSF004L05+          TGTGGCCTAGTCAGATTGTTTCAAAGTAAGGAAAATATCAAGACATTTTGGTAACTCGTT
rJMSF016H16+          TGTGGCCTAGTCAGATTGTTTCAAAGTAAGGAAAATATCAAGACATTTTGGTAACTCGTT
rJMSF050P22+          TGTGGCCTAGTCAGATTGTTTCAAAGTAAGGAAAATATCAAGACATTTTGGTAACTCGTT
                      ____________________________________________________________
consensus             TGTGGCCTAGTCAGATTGTTTCAAAGTAAGGAAAATATCAAGACATTTTGGTAACTCGTT
 
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rJMSF004L05+          CTAGTATAGGGTT                                               
rJMSF016H16+          CTAGTATAGGGTT                                               
rJMSF050P22+          CTAGTATAGGGTTTATCTATTATTATTATGTTGAATGCGGTATTACTTTCATGATGCTCA
                      ____________________________________________________________
consensus             CTAGTATAGGGTTTATCTATTATTATTATGTTGAATGCGGTATTACTTTCATGATGCTCA
 
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rJMSF050P22+          ATGATTTTCAGGAAGAAGGCATCAGTTTACGTTGGTTCTAATTGTGTTGGGAAATCTGTG
                      ____________________________________________________________
consensus             ATGATTTTCAGGAAGAAGGCATCAGTTTACGTTGGTTCTAATTGTGTTGGGAAATCTGTG