Contig 012778:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF050I20+                                                        TTCGATTTTGCTTC
                      ____________________________________________________________
consensus                                                           TTCGATTTTGCTTC
 
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rJMSF050I20+          AGGTTGTTGCTGACCACAAGAAAATCTTCTGGGATGTTTGTGTGAAATCTCCTGGCGGGT
                      ____________________________________________________________
consensus             AGGTTGTTGCTGACCACAAGAAAATCTTCTGGGATGTTTGTGTGAAATCTCCTGGCGGGT
 
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rJMSF036M01+                                GGATAGCTTGNTGTATAATAGGTTGANTTCGGGGGACA
rJMSF050I20+          TTGATGACGCTACTCATTTTAGGGATAGCTTGTTGTATAATAGGTTGATTTCGGGGGACA
                      ____________________________________________________________
consensus             TTGATGACGCTACTCATTTTAGGGATAGCTTGTTGTATAATAGGTTGATTTCGGGGGACA
 
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rJMSF036M01+          TTGTTTGGGACAAGGTGATCAATGTGAGGGGACAGCATGTTAGGCCTTACATTGTTGGAG
rJMSF050I20+          TTGTTTGGGACAAGGTGATCAATGTGAGGGGACAGCATGTTAGGCCTTACATTGTTGGAG
                      ____________________________________________________________
consensus             TTGTTTGGGACAAGGTGATCAATGTGAGGGGACAGCATGTTAGGCCTTACATTGTTGGAG
 
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rJMSF036M01+          ACTGGGGTTTCCCATTGCTGTCGTTTCTGCTCACTCCGTTTTCGTGGAACAGGACTGGAA
rJMSF050I20+          ACTGGGGTTTCCCATTGCTGTCGTTTCTGCTCACTCCGTTTTCGTGGAACAGGACTGGAA
                      ____________________________________________________________
consensus             ACTGGGGTTTCCCATTGCTGTCGTTTCTGCTCACTCCGTTTTCGTGGAACAGGACTGGAA
 
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rJMSF036M01+          CTCCTGCTCAGAATGCATTCGATGAAGCACTGATGAAGGGTAGAAAGATGGTTGAGGAAG
rJMSF050I20+          CTCCTGCTCAGAATGCATTCGATGAAGCACTGATGAAGGGTAGAAAGATGGTTGAGGAAG
                      ____________________________________________________________
consensus             CTCCTGCTCAGAATGCATTCGATGAAGCACTGATGAAGGGTAGAAAGATGGTTGAGGAAG
 
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rJMSF036M01+          CCATTGGTTTGTTGAAGGGAAGGTGGAAGATTCTTCAGAACTTGAATGTGGGTCTAACTC
rJMSF050I20+          CCATTGGTTTGTTGAAGGGAAGGTGGAAGATTCTTCAGAACTTGAATGTGGGTCTAACTC
                      ____________________________________________________________
consensus             CCATTGGTTTGTTGAAGGGAAGGTGGAAGATTCTTCAGAACTTGAATGTGGGTCTAACTC
 
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rJMSF036M01+          ATGCACCTCAAACAATTGTTGCCTGTTGCGTTTTGCATAACTTATGCCAGATCGCGAGGG
rJMSF050I20+          ATGCACCTCAAACAATTGTTGCCTGTTGCGTTTTGCATAACTTATGCCAGATCGCGAGGG
                      ____________________________________________________________
consensus             ATGCACCTCAAACAATTGTTGCCTGTTGCGTTTTGCATAACTTATGCCAGATCGCGAGGG
 
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rJMSF036M01+          AGCCTGAGCCGGAGCTCTGGAAGGAACCAGACGAGAATGGATCATCACCACGGGTGTTAG
rJMSF050I20+          AGCCTGAGCCGGAGCTCTGGAAGGAACCAGACGAGAATGGATCATCACCACGGGTGTTAG
                      ____________________________________________________________
consensus             AGCCTGAGCCGGAGCTCTGGAAGGAACCAGACGAGAATGGATCATCACCACGGGTGTTAG
 
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rJMSF036M01+          AGAACGAGAAGTCTTTCCATTATTATGGCGAAAGCATGAGGCAGGCATTGGCTGATGAGC
rJMSF050I20+          AGAACGAGAAGTCTTTCCATTATTATGGCGAAAGCATGAGGCAGGCATTGGCTGATGAGC
                      ____________________________________________________________
consensus             AGAACGAGAAGTCTTTCCATTATTATGGCGAAAGCATGAGGCAGGCATTGGCTGATGAGC
 
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rJMSF036M01+          TGTATCAACAGCTCTCTTCCAGATAGGAGGATTTTAAACGAAGGGAGAAGGAGCAGGATC
rJMSF050I20+          TGTATCAACAGCTCTCTTCCAGATAGGAGGATTTTAAACGAAGGGAGAAGGAGCAGGATC
                      ____________________________________________________________
consensus             TGTATCAACAGCTCTCTTCCAGATAGGAGGATTTTAAACGAAGGGAGAAGGAGCAGGATC
 
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rJMSF036M01+          ATCAGCCATGCAATGATGTAAGTGTAGATTCTCTTTGTAGTTTAAACTTATTTGCCCTGT
rJMSF050I20+          ATCAGCCATGCAATGATGTAAGTGTAGATTCTCTTTGTAGTTTAAACTTATTTGCCCTGT
                      ____________________________________________________________
consensus             ATCAGCCATGCAATGATGTAAGTGTAGATTCTCTTTGTAGTTTAAACTTATTTGCCCTGT
 
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rJMSF036M01+          AGCTGATATTTGCCATTCGAACAAAACTTCCATGTATTGCATTCAATTGTTTCGTCGATT
rJMSF050I20+          AGCTGATATTTGCCATTCGAACAAAACTTCCATGTATTGCATTCAATTGTTTCGTCGATT
                      ____________________________________________________________
consensus             AGCTGATATTTGCCATTCGAACAAAACTTCCATGTATTGCATTCAATTGTTTCGTCGATT
 
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rJMSF036M01+          CTACAACGTAAAACATGATGATGAAACTATTGTTTCCCAC                    
rJMSF050I20+          CTACAACGT-AAACATGATGATGAAACTATTGTTTCCCACAGGAGAAGTTTTGTTGCTTC
                      ____________________________________________________________
consensus             CTACAACGTAAAACATGATGATGAAACTATTGTTTCCCACAGGAGAAGTTTTGTTGCTTC