Contig 012771:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031M16Sequence593012771 (6)gb|ABL67953.2|4e-1031-aminocyclopropane-1-carboxylate oxidase [Ipomoea nil]793012771 (6)gb|ABL67953.2|2e-1201-aminocyclopropane-1-carboxylate oxidase [Ipomoea nil]
JMSF047N02Sequence643012771 (6)gb|ABL67953.2|1e-1151-aminocyclopropane-1-carboxylate oxidase [Ipomoea nil]721012771 (6)gb|ABL67953.2|2e-1241-aminocyclopropane-1-carboxylate oxidase [Ipomoea nil]
JMSF049I21Sequence659012771 (6)gb|ABL67953.2|1e-1291-aminocyclopropane-1-carboxylate oxidase [Ipomoea nil]726012771 (6)gb|ABL67953.2|6e-1091-aminocyclopropane-1-carboxylate oxidase [Ipomoea nil]

Alignment

This contig is upended


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JMFF031M16-                      ATCACAACTTAAAAGCACCATATATCTCCTTGCTTGTTCACATTCACTC
JMSF047N02-                     GATCACAACTTAAAAGCACCATATATCTCCTTGCTTGTTCACATTCACTC
JMSF049I21-                                                             ACATTCACTC
                      ____________________________________________________________
consensus                       GATCACAACTTAAAAGCACCATATATCTCCTTGCTTGTTCACATTCACTC
 
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JMFF031M16-           ACTGCAGATACTTTCAAGAATTGAGAAAATGGCAAACTTCCCAGTTATCAACATGGAAAA
JMSF047N02-           ACTGCAGATACTTTCAAGAATTGAGAAAATGGCAAACTTCCCAGTTATCAACATGGAAAA
JMSF049I21-           ACTGCAGATACTTTCAAGAATTGAGAAAATGGCAAACTTCCCAGTTATCAACATGGAAAA
                      ____________________________________________________________
consensus             ACTGCAGATACTTTCAAGAATTGAGAAAATGGCAAACTTCCCAGTTATCAACATGGAAAA
 
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JMFF031M16-           GCTTAATGGCGCTGAGAGAGGAGATGCCATGGAACTCATCAAAGATGCCTGCGAGAATTG
JMSF047N02-           GCTTAATGGCGCTGAGAGAGGAGATGCCATGGAACTCATCAAAGATGCCTGCGAGAATTG
JMSF049I21-           GCTTAATGGCGCTGAGAGAGGAGATGCCATGGAACTCATCAAAGATGCCTGCGAGAATTG
                      ____________________________________________________________
consensus             GCTTAATGGCGCTGAGAGAGGAGATGCCATGGAACTCATCAAAGATGCCTGCGAGAATTG
 
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JMFF031M16-           GGGTTTCTTTGAGTTGTTGAACCATGGGATTCCTCATGAAGTAATGGACAACATTGAGAA
JMSF047N02-           GGGTTTCTTTGAGTTGTTGAACCATGGGATTCCTCATGAAGTAATGGACAACATTGAGAA
JMSF049I21-           GGGTTTCTTTGAGTTGTTGAACCATGGGATTCCTCATGAAGTAATGGACAACATTGAGAA
                      ____________________________________________________________
consensus             GGGTTTCTTTGAGTTGTTGAACCATGGGATTCCTCATGAAGTAATGGACAACATTGAGAA
 
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JMFF031M16-           ACTGACAAAGGAGCATTACAAGAAGGTAATGGAGCAGAGGTTTAAGGATTTGGTAGCCAG
JMSF047N02-           ACTGACAAAGGAGCATTACAAGAAGGTAATGGAGCAGAGGTTTAAGGATTTGGTAGCCAG
JMSF049I21-           ACTGACAAAGGAGCATTACAAGAAGGTAATGGAGCAGAGGTTTAAGGATTTGGTAGCCAG
                      ____________________________________________________________
consensus             ACTGACAAAGGAGCATTACAAGAAGGTAATGGAGCAGAGGTTTAAGGATTTGGTAGCCAG
 
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JMFF031M16-           CAAGGGCTTAGAAGGTGTAGAAGCCGAGGTTACTGATATGGATTGGGAAAGCACTTTCTT
JMSF047N02-           CAAGGGCTTAGAAGGTGTAGAAGCCGAGGTTACTGATATGGATTGGGAAAGCACTTTCTT
JMSF049I21-           CAAGGGCTTAGAAGGTGTAGAAGCCGAGGTTACTGATATGGATTGGGAAAGCACTTTCTT
                      ____________________________________________________________
consensus             CAAGGGCTTAGAAGGTGTAGAAGCCGAGGTTACTGATATGGATTGGGAAAGCACTTTCTT
 
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JMFF031M16-           CTTGCGCCACCTTCCAGTTTCCACCATTTCCCAAGTCCCTGATCTTGACGACAATTACAG
JMSF047N02-           CTTGCGCCACCTTCCAGTTTCCACCATTTCCCAAGTCCCTGATCTTGACGACAATTACAG
JMSF049I21-           CTTGCGCCACCTTCCAGTTTCCACCATTTCCCAAGTCCCTGATCTTGACGACAATTACAG
rJMSF047N02+                                                                 TACAG
                      ____________________________________________________________
consensus             CTTGCGCCACCTTCCAGTTTCCACCATTTCCCAAGTCCCTGATCTTGACGACAATTACAG
 
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JMFF031M16-           GGAGGCAATGAGAGACTTTGCCAAAAGATTGGAGAAACTAGCAGAGGAGCTTCTAGACTT
JMSF047N02-           GGAGGCAATGAGAGACTTTGCCAAAAGATTGGAGAAACTAGCAGAGGAGCTTCTAGACTT
JMSF049I21-           GGAGGCAATGAGAGACTTTGCCAAAAGATTGGAGAAACTAGCAGAGGAGCTTCTAGACTT
rJMSF047N02+          GGAGGCAATGAGAGACTTTGCCAAAAGATTGGAGAAACTAGCAGAGGAGCTTCTAGACTT
rJMFF031M16+               CAATGAGAGACTTTGCCAAAAGATTGGAGAAACTAGCAGAGGAGCTTCTAGACTT
                      ____________________________________________________________
consensus             GGAGGCAATGAGAGACTTTGCCAAAAGATTGGAGAAACTAGCAGAGGAGCTTCTAGACTT
 
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JMFF031M16-           GCTGTGCGAGAATCTTGGACTAGAAAAAGGGTACTTGAAAAAGGCCTTTTATGGATCCAC
JMSF047N02-           GCTGTGCGAGAATCTTGGACTAGAAAAAGGGTACTTGAAAAAGGCCTTTTATGGATCCAC
JMSF049I21-           GCTGTGCGAGAATCTTGGACTAGAAAAAGGGTACTTGAAAAAGGCCTTTTATGGATCCAC
rJMSF047N02+          GCTGTGCGAGAATCTTGGACTAGAAAAAGGGTACTTGAAAAAGGCCTTTTATGGATCCAC
rJMFF031M16+          GCTGTGCGAGAATCTTGGACTAGAAAAAGGGTACTTGAAAAAGGCCTTTTATGGATCCAC
rJMSF049I21+                                                                ATCCAC
                      ____________________________________________________________
consensus             GCTGTGCGAGAATCTTGGACTAGAAAAAGGGTACTTGAAAAAGGCCTTTTATGGATCCAC
 
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JMFF031M16-           AGCTCCAAATTTCGGGTCCAAAGTGAGCAACTATCCACCATGCCCAAAACCAGATTTGAT
JMSF047N02-           AGCTCCAAATTTCGGGTCCAAAGTGAGCAACTATCCACCATGCCCAAAACCAGATTTGAT
JMSF049I21-           AGCTCCAAATTTCGGGTCCAAAGTGAGCAACTATCCACCATGCCCAAAACCAGATTTGAT
rJMSF047N02+          AGCTCCAAATTTCGGGTCCAAAGTGAGCAACTATCCACCATGCCCAAAACCAGATTTGAT
rJMFF031M16+          AGCTCCAAATTTCGGGTCCAAAGTGAGCAACTATCCACCATGCCCAAAACCAGATTTGAT
rJMSF049I21+          AGCTCCAAATTTCNGGTCCAAAGTGAGCAACTATCCACCATGCCCAAAACCAGATTTGAT
                      ____________________________________________________________
consensus             AGCTCCAAATTTCGGGTCCAAAGTGAGCAACTATCCACCATGCCCAAAACCAGATTTGAT
 
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JMFF031M16-           CAAA                                                        
JMSF047N02-           CAAAGGTCTCCGAGCCCACACCGACGCCGGCGGCATAATCCTCCTCTTCCAAG       
JMSF049I21-           CAAAGGTCTCCGAGCCCACACCGACGCCGGCGGCATAATCCTCCTCTTCCAAGACGACAA
rJMSF047N02+          CAAAGGTCTCCGAGCCCACACCGACGCCGGCGGCATAATCCTCCTCTTCCAAGACGACAA
rJMFF031M16+          CAAAGGTCTCCGAGCCCACACCGACGCCGGCGGCATAATCCTCCTCTTCCAAGACGACAA
rJMSF049I21+          CAAAGGTCTCCGAGCCCACACCGACGCCGGCGGCATAATCCTCCTCTTCCAAGACGACAA
                      ____________________________________________________________
consensus             CAAAGGTCTCCGAGCCCACACCGACGCCGGCGGCATAATCCTCCTCTTCCAAGACGACAA
 
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JMSF049I21-           AGTTAGCGGCCTCCAGCTTCTGAAAGACGGGGAATGGGTGGACGTTCC            
rJMSF047N02+          AGTTAGCGGCCTCCAGCTTCTGAAAGACGGGGAATGGGTGGACGTTCCTCCCATGCGCCA
rJMFF031M16+          AGTTAGCGGCCTCCAGCTTCTGAAAGACGGGGAATGGGTGGACGTTCCTCCCATGCGCCA
rJMSF049I21+          AGTTAGCGGCCTCCAGCTTCTGAAAGACGGGGAATGGGTGGACGTTCCTCCCATGCGCCA
                      ____________________________________________________________
consensus             AGTTAGCGGCCTCCAGCTTCTGAAAGACGGGGAATGGGTGGACGTTCCTCCCATGCGCCA
 
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rJMSF047N02+          CTCCATCGTCGTCAACCTGGGCGACCAACTCGAGGTGATCACCAATGGTAAATATAAGAG
rJMFF031M16+          CTCCATCGTCGTCAACCTGGGCGACCAACTCGAGGTGATCACCAATGGTAAATATAAGAG
rJMSF049I21+          CTCCATCGTCGTCAACCTGGGCGACCAACTCGAGGTGATCACCAATGGTAAATATAAGAG
                      ____________________________________________________________
consensus             CTCCATCGTCGTCAACCTGGGCGACCAACTCGAGGTGATCACCAATGGTAAATATAAGAG
 
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rJMSF047N02+          CGTGGAACATAGAGTGATTGCGCAAACAGACGGGGCCAGGATGTCCATAGCTTCGTTCTA
rJMFF031M16+          CGTGGAACATAGAGTGATTGCGCAAACAGACGGGGCCAGGATGTCCATAGCTTCGTTCTA
rJMSF049I21+          CGTGGAACATAGAGTGATTGCGCAAACAGACGGGGCCAGGATGTCCATAGCTTCGTTCTA
                      ____________________________________________________________
consensus             CGTGGAACATAGAGTGATTGCGCAAACAGACGGGGCCAGGATGTCCATAGCTTCGTTCTA
 
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rJMSF047N02+          CAACCCAGCAAGCGATGCTGTCATCTACCCGGCACCGGCTCTGGTGGAGAAAGCTGCTGA
rJMFF031M16+          CAACCCAGCAAGCGATGCTGTCATCTACCCGGCACCGGCTCTGGTGGAGAAAGCTGCTGA
rJMSF049I21+          CAACCCAGCAAGCGATGCTGTCATCTACCCGGCACCGGCTCTGGTGGAGAAAGCTGCTGA
                      ____________________________________________________________
consensus             CAACCCAGCAAGCGATGCTGTCATCTACCCGGCACCGGCTCTGGTGGAGAAAGCTGCTGA
 
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rJMSF047N02+          TGATGAGAAAGTTTACCCAAAATTTGTGTTCGATGATTACATGAAGTTATACGCAGGCCT
rJMFF031M16+          TGATGAGAAAGTTTACCCAAAATTTGTGTTCGATGATTACATGAAGTTATACGCAGGCCT
rJMSF049I21+          TGATGAGAAAGTTTACCCAAAATTTGTGTTCGATGATTACATGAAGTTATACGCAGGCCT
                      ____________________________________________________________
consensus             TGATGAGAAAGTTTACCCAAAATTTGTGTTCGATGATTACATGAAGTTATACGCAGGCCT
 
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rJMSF047N02+          AAAGTTTCAGCCCAAAGAGCCGAGGTTCGACGCCATGAAGGCCGCCCAAACTGCATAGAG
rJMFF031M16+          AAAGTTTCAGCCCAAAGAGCCGAGGTTCGACGCCATGAAGGCCGCCCAAACTGCATAGAG
rJMSF049I21+          AAAGTTTCAGCCCAAAGAGCCGAGGTTCGACGCCATGAAGGCCGCCCAAACTGCATAGAG
                      ____________________________________________________________
consensus             AAAGTTTCAGCCCAAAGAGCCGAGGTTCGACGCCATGAAGGCCGCCCAAACTGCATAGAG
 
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rJMSF047N02+          ATATCAGCATTCATGTTCAATCAAGGGAAGATGGACAAGTGGAAGTCTCTGCCTAATTCA
rJMFF031M16+          ATATCAGCATTCATGTTCAATCAAGGGAAGATGGACAAGTGGAAGTCTCTGCCTAATTCA
rJMSF049I21+          ATATCAGCATTCATGTTCAATCAAGGGAAGATGGACAAGTGGAAGTCTCTGCCTAATTCA
                      ____________________________________________________________
consensus             ATATCAGCATTCATGTTCAATCAAGGGAAGATGGACAAGTGGAAGTCTCTGCCTAATTCA
 
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rJMSF047N02+          AAGACATATTTATTATTATTATTTTATATTTCTTATTCTTGTTNTGGAGGAT        
rJMFF031M16+          AAGACATATTTATTATTATTATTTTATATTTCTTATTCTTGTTTTGGAGGATGAAATAAA
rJMSF049I21+          AAGACATATTTATTATTATTATTTTATATTTCTTATTCTTGTTTTGGAGGATGAAATAAA
                      ____________________________________________________________
consensus             AAGACATATTTATTATTATTATTTTATATTTCTTATTCTTGTTTTGGAGGATGAAATAAA
 
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rJMFF031M16+          CTAGGCCTTTGCTACTAAAGCAAGACCTCATTATGTATCATTTCAAACATTCTTATTTTT
rJMSF049I21+          CTAGGCCTTTGCTACTAAAGCAAGACCTCATTATGTATCATTTCAAACATTCTTATTTTT
                      ____________________________________________________________
consensus             CTAGGCCTTTGCTACTAAAGCAAGACCTCATTATGTATCATTTCAAACATTCTTATTTTT
 
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rJMFF031M16+          CTTCAAGAATATTATTAA                                          
rJMSF049I21+          CTTCAAGAATATTATTAATGTGAAATTCCATATTTGTCTAATGGATATTTGTAATTCTCT
                      ____________________________________________________________
consensus             CTTCAAGAATATTATTAATGTGAAATTCCATATTTGTCTAATGGATATTTGTAATTCTCT