| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015L08 | Sequence | 610 | 001633 (7) | 660 | 012766 (6) | ref|XP_009603675.1| | 1e-99 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] | |||
| JMFF036H11 | Sequence | 611 | 001633 (7) | 512 | 012766 (6) | ref|XP_009603675.1| | 5e-63 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] | |||
| JMFF048K24 | Sequence | 411 | 001633 (7) | 197 | 012766 (6) | ref|XP_009603675.1| | 6e-05 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] | |||
| JMSF018H13 | Sequence | 574 | 001633 (7) | 687 | 012766 (6) | ref|XP_009603675.1| | 8e-99 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] | |||
| JMSF026M11 | Sequence | 206 | 001633 (7) | 706 | 012766 (6) | ref|XP_009603675.1| | 3e-102 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] | |||
| JMSF048I21 | Sequence | 706 | 001633 (7) | ref|XP_010109124.1| | 1e-43 | hypothetical protein L484_000282 [Morus notabilis] gb|EXC55735.1| hypothetical p | 720 | 012766 (6) | ref|XP_009603675.1| | 7e-81 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF015L08+ CCACGGGGGATGA
rJMSF018H13+ GGGATGA
rJMSF026M11+ GGGATGA
____________________________________________________________
consensus CCACGGGGGATGA
. : . : . : . : . : . :
rJMFF015L08+ CCTCGTGTCTGTGAAGAGCGGGTGGGATGAGTATGGCATTGCTTATGGGCGGCCTAGCCA
rJMSF018H13+ CCTCGTGTCTGTGAAGAGCGGGTGGGATGAGTATGGCATTGCTTATGGGCGGCCTAGCCA
rJMSF026M11+ CNTCGTGTCTGTGAAGAGCGGGTGGGATGAGTATGGCATTGCTTATGGGCGGCCTAGNCA
____________________________________________________________
consensus CCTCGTGTCTGTGAAGAGCGGGTGGGATGAGTATGGCATTGCTTATGGGCGGCCTAGCCA
. : . : . : . : . : . :
rJMFF015L08+ TGGCATTACCATTCGACGAGTAACAGGGTCATCACCATTCTCTGGAATTTCAGTTGGGAG
rJMSF018H13+ TGGCATTANCATTCGNCGAGTAACAGGGTCATCACCATTCTCTGGAATTTCAGTTGGGAG
rJMSF026M11+ NGGCATTANCATTCGACGAGTAACAGGGTCATCACCATTCTCTGGAATTTCAGTTGGGAG
rJMSF048I21+ GGCATTACCATTCGACGAGTAACAGGGTCATCACCATTCTCTGGAATTTCAGTTGGGAG
____________________________________________________________
consensus TGGCATTACCATTCGACGAGTAACAGGGTCATCACCATTCTCTGGAATTTCAGTTGGGAG
. : . : . : . : . : . :
rJMFF036H11+ CCTCGGGTGGCATAGTAGANNTCTTGGCAGAGCNCATAANCCTGTACANCATTGG
rJMFF015L08+ CGAAACCTCGGGTGGCATAGTAGATGTCTTGGCAGAGCACATAAACCTGTACAACATTGG
rJMSF018H13+ CGAAACCTCGGGTGGCATAGTAGATGTCTTGGCAGAGCACATAAACCTGTACAACATTGG
rJMSF026M11+ CGAAACCTNGGGTGGCATAGTAGATGTCTTGGCAGAGCACATAAACCTGTACAACATTGG
rJMSF048I21+ CGAAACCTCGGGTGGCATAGTAGATGTCTTGGCAGAGCACATAAACCTGTACAACATTGG
____________________________________________________________
consensus CGAAACCTCGGGTGGCATAGTAGATGTCTTGGCAGAGCACATAAACCTGTACAACATTGG
. : . : . : . : . : . :
rJMFF036H11+ CGTCGGGATCCATATAAAAACGAACATTGGCCGGGGAGGAATCATCAGAAACATCACCGT
rJMFF015L08+ CGTCGGGATCCATATAAAAACGAACATTGGCCGGGGAGGAATCATCAGAAACATCACCGT
rJMSF018H13+ CGTCGGGATCCATATAAAAACGAACATTGGCCGGGGAGGAATCATCAGAAACATCACCGT
rJMSF026M11+ CGTCGGGATCCATATAAAAACGAACATTGGCCGGGGAGGANTCATCAGAAACATCACNGT
rJMSF048I21+ CGTCGGGATCCATATAAAAACGAACATTGGCCGGGGAGGAATCATCAGAAACATCACCGT
____________________________________________________________
consensus CGTCGGGATCCATATAAAAACGAACATTGGCCGGGGAGGAATCATCAGAAACATCACCGT
. : . : . : . : . : . :
rJMFF036H11+ CTCTAACGTCTACATGGAAAACGCAAGAACGGGGATAAAGATTGCAGGCGACGTCGGGGA
rJMFF015L08+ CTCTAACGTCTACATGGAAAACGCAAGAACGGGGATAAAGATTGCAGGCGACGTCGGGGA
rJMSF018H13+ CTCTAACGTCTACATGGAAAACGCAAGAACGGGGATAAAGATTGCAGGCGACGTCGGGGA
rJMSF026M11+ CTCTAACGTNTACATGGAAAACGCAAGAACGGGGATAAAGATTGCAGGCGACGTCGGGGA
rJMSF048I21+ CTCTAACGTCTACATGGAAAACGCAAGAACGGGGATAAAGATTGCAGGCGACGTCGGGGA
____________________________________________________________
consensus CTCTAACGTCTACATGGAAAACGCAAGAACGGGGATAAAGATTGCAGGCGACGTCGGGGA
. : . : . : . : . : . :
rJMFF036H11+ CCATCCCGACAACAGATTCAACCCAAACGCTCTCCCAATTGTCAGTGGCATCAAAATCCA
rJMFF015L08+ CCATCCCGACAACAGATTCAACCCAAACGCTCTCCCAATTGTCAGTGGCATCAAAATCCA
rJMSF018H13+ CCATCCCGACAACAGATTCAACCCAAACGCTCTCCCAATTGTCAGTGGCATCAAAATCCA
rJMSF026M11+ CCATCCCGACAACAGATTCAACCCAAACGCTCTCCCAATTGTCAGTGGCATCAAAATCCA
rJMSF048I21+ CCATCCCGACAACAGATTCAACCCAAACGCTCTCCCAATTGTCAGTGGCATCAAAATCCA
____________________________________________________________
consensus CCATCCCGACAACAGATTCAACCCAAACGCTCTCCCAATTGTCAGTGGCATCAAAATCCA
. : . : . : . : . : . :
rJMFF036H11+ GGATGTGTGGGGCAAAAAGGTCTCGCAGCCCGGTTTCATTCGTGGTCTCAAGAAATCTCC
rJMFF015L08+ GGATGTGTGGGGCAAAAAGGTCTCGCAGCCCGGTTTCATTCGTGGTCTCAAGAAATCTCC
rJMSF018H13+ GGATGTGTGGGGCAAAAAGGTCTCGCAGCCCGGTTTCATTCGTGGTCTCAAGAAATCTCC
rJMSF026M11+ GGATGTGTGGGGCAAAAAGGTCTCGCAGCCCGGTTTCATTCGTGGTNTCAAGAAATCTCC
rJMSF048I21+ GGATGTGTGGGGCAAAAAGGTCTCGCAGCCCGGTTTCATTCGTGGTCTCAAGAAATCTCC
____________________________________________________________
consensus GGATGTGTGGGGCAAAAAGGTCTCGCAGCCCGGTTTCATTCGTGGTCTCAAGAAATCTCC
. : . : . : . : . : . :
rJMFF036H11+ TTTCACTCATATTTGCCTCTCCAACATCCACCTCAATGGCGCCTCCTCGCCTCGAAATCC
rJMFF015L08+ TTTCACTCATATTTGCCTCTCCAACATCCACCTCAATGGCGCCTCCTCGCCTCGAAATCC
rJMSF018H13+ TTTCACTCATATTTGCCTCTCCAACATCCACCTCAATGGCGCCTCCTCGCCTCGAAATCC
rJMSF026M11+ TTTCACTCATATTTGCCTCTCCAACATCCACCTCAATGGCGCCTCCTCGCCTCGAAATCC
rJMSF048I21+ TTTCACTCATATTTGCCTCTCCAACATCCACCTCAATGGCGCCTCCTCGCCTCGAAATCC
____________________________________________________________
consensus TTTCACTCATATTTGCCTCTCCAACATCCACCTCAATGGCGCCTCCTCGCCTCGAAATCC
. : . : . : . : . : . :
rJMFF036H11+ TCCATGGAAGTGCTCCGATGTTCACGGCGCTGCAATCCAGGTTAGCCCATGGCCCTGCTC
rJMFF015L08+ TCCATGGAAGTGCTCCGATGTTCACGGCGCTGCAATCCAGGTTAGCCCATGGCCCTGCTC
rJMSF018H13+ TCCATGGAAGTGCTCCGATGTTCACGGCGCTGCAATCCAGGTTAGCCCATGGCCCTGCTC
rJMSF026M11+ TCCATGGAAGTGCTCCGATGTTCACGGCGCTGCAATCCAGGTTAGCCCATGGCCNTGCTC
rJMFF048K24+ CCGATGTTCACGGCGCTGCAATCCAGGTTAGCCCATGGCCCTGCTC
rJMSF048I21+ TCCATGGAAGTGCTCCGATTTTCACGGCGCTGCAATCCAGGTTAGCCCATGGCCCTGCTC
____________________________________________________________
consensus TCCATGGAAGTGCTCCGATGTTCACGGCGCTGCAATCCAGGTTAGCCCATGGCCCTGCTC
. : . : . : . : . : . :
rJMFF036H11+ AGAACTAGCAACCAACCATAGATATGGTGCATGCTCTGCCACTCTCTAACCCGCAAAAGT
rJMFF015L08+ AGAACTAGCAACCAACCATAGATATGGTGCATGCTCTGCCACTCTCTAACCCGCAAAAGT
rJMSF018H13+ AGAACTAGCAACCAACCATAGATATGGTGCATGCTCTGCCACTCTCTAACCCGCAAAAGT
rJMSF026M11+ AGAACTAGCANCCAACCATAGATATGGTGCATGCTCTGCCACTCTNTAACCCGCAAAAGT
rJMFF048K24+ AGAACTAGCAACCAACCATAGATATGGTGCATGCTCTGCCACTCTCTAACCCGCAAAAGT
rJMSF048I21+ AGAACTAGCAACCAACCATAGATATGGTGCATGCTCTGCCACTCTCTAACCCGCAAAAGT
____________________________________________________________
consensus AGAACTAGCAACCAACCATAGATATGGTGCATGCTCTGCCACTCTCTAACCCGCAAAAGT
. : . : . : . : . : . :
rJMFF036H11+ TGATAGTTAGACTGCACATTTATTGTTATATTT
rJMFF015L08+ TGATAGTTAGACTGCACATTTATTGTTATATTTCCGTTTTCGAAGTT
rJMSF018H13+ TGATAGTTAGACTGCACATTTATTGTTATATTTCCGTTTTCGAAGTTTATGTCATTGTTG
rJMSF026M11+ TGATAGTTAGACTGCACATTTATTGTTATATTTCCGTTTTCGAAGTTTATGTCATTGTTG
rJMFF048K24+ TGATAGTTAGACTGCACATTTATTGTTATATTTCCGTTTTCGAAGTTTATGTCATTGTTG
rJMSF048I21+ TGATAGTTAGACTGCACATTTATTGTTATATTTCCGTTTTCGAAGTTTATGTCATTGTTG
____________________________________________________________
consensus TGATAGTTAGACTGCACATTTATTGTTATATTTCCGTTTTCGAAGTTTATGTCATTGTTG
. : . : . : . : . : . :
rJMSF018H13+ AATTAAATTAT
rJMSF026M11+ AATTAAATTATTAGTATATATTAACCATCCCC
rJMFF048K24+ AATTAAATTA-TAGTATATATTAACCATCCCC
rJMSF048I21+ AATTAAATTA-TAGTATATATTAACCATCCCCATCCCATTTTCACTTTCATCATTAACAA
____________________________________________________________
consensus AATTAAATTATTAGTATATATTAACCATCCCCATCCCATTTTCACTTTCATCATTAACAA
. : . : . : . : . : . :
rJMSF048I21+ AATTGAGTTGTGATTTGTATTATTGATATCTGGGAACCCGCAGATACTCTCTGAACTGCG
____________________________________________________________
consensus AATTGAGTTGTGATTTGTATTATTGATATCTGGGAACCCGCAGATACTCTCTGAACTGCG