Contig 012759:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF047H24Sequence695012759 (2)ref|XP_009765061.1|3e-57PREDICTED: vesicle-associated protein 4-1-like isoform X2 [Nicotiana sylvestris718012759 (2)ref|XP_009616168.1|4e-71PREDICTED: vesicle-associated protein 4-1-like isoform X1 [Nicotiana tomentosif

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-               GGCTCCCCGTTTTGAACATTCATGGCCTCACCTCCCAATTAACTACGCTTTAAACA
                      ____________________________________________________________
consensus                 GGCTCCCCGTTTTGAACATTCATGGCCTCACCTCCCAATTAACTACGCTTTAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           ATTATTATTATTCTCAGATTCCGGCGAACTAATGACAATCGGCGATCACAGCAAGTCCGA
                      ____________________________________________________________
consensus             ATTATTATTATTCTCAGATTCCGGCGAACTAATGACAATCGGCGATCACAGCAAGTCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           CGGCAAGCTCTGGAAGCTCTGCCCTTTCTGGCAATCCGGAACTGCCTCTTCTTCCTCCAC
                      ____________________________________________________________
consensus             CGGCAAGCTCTGGAAGCTCTGCCCTTTCTGGCAATCCGGAACTGCCTCTTCTTCCTCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           GGCTTCCACTCAGAACCTCAACTCTGCTCACCGAAACGGCGTCGGATCCACCACTACTTC
                      ____________________________________________________________
consensus             GGCTTCCACTCAGAACCTCAACTCTGCTCACCGAAACGGCGTCGGATCCACCACTACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           GCGCTCCTCCACTTCTGTCTCCTCCGTAGCTAGATCCTTCCTCCCTGCTCGCCGTCGCCT
                      ____________________________________________________________
consensus             GCGCTCCTCCACTTCTGTCTCCTCCGTAGCTAGATCCTTCCTCCCTGCTCGCCGTCGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           GCGCCTCGATCCGGCTAATAATCTCTATTTT-CCTTATGAACC-GGGAAAACAGGCAAGA
rJMSF047H24+            GCCTCGATCCGGCTAATAATCTCTATTTTCCCTTATGAACCGGGGAAANCAGGCAAGA
                      ____________________________________________________________
consensus             GCGCCTCGATCCGGCTAATAATCTCTATTTTCCCTTATGAACCGGGGAAAACAGGCAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           AGTGCTGTTAGGATTAAGAATACTAGCAAATCTTATGTAGCGTTCAAGTTCCAAACAACT
rJMSF047H24+          AGTGCTGTTAGGATTAAGAATACTAGCAAATCTTATGTAGCGTTCAAGTTCCAAACAACT
                      ____________________________________________________________
consensus             AGTGCTGTTAGGATTAAGAATACTAGCAAATCTTATGTAGCGTTCAAGTTCCAAACAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           TCGCCGAAGAGCTGTTATATGCGACCTCCTGGGGGTATTCTTGCACCTGGTGAATCATTA
rJMSF047H24+          TCGCCGAAGAGCTGTTATATGCGACCTCCTGGGGGTATTCTTGCACCTGGTGAATCATTA
                      ____________________________________________________________
consensus             TCGCCGAAGAGCTGTTATATGCGACCTCCTGGGGGTATTCTTGCACCTGGTGAATCATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           TTGCTACAGTATTCAAGTTTGTGGAGCATCCAGAGAACAATGAAAAGCCTCCCATGGATC
rJMSF047H24+          TTGCTACAGTATTCAAGTTTGTGGAGCATCCAGAGAACAATGAAAAGCCTCCCATGGATC
                      ____________________________________________________________
consensus             TTGCTACAGTATTCAAGTTTGTGGAGCATCCAGAGAACAATGAAAAGCCTCCCATGGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           AAAAGAGTAAGGTCAAGTTCAAGATCATGAGCTTGAAGGTGAAAAAAGGAGCAGAGTATG
rJMSF047H24+          AAAAGAGTAAGGTCAAGTTCAAGATCATGAGCTTGAAGGTGAAAAAAGGAGCAGAGTATG
                      ____________________________________________________________
consensus             AAAAGAGTAAGGTCAAGTTCAAGATCATGAGCTTGAAGGTGAAAAAAGGAGCAGAGTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           TGCCTGAATTGTTTGATGAACAAAAAGAGCAAGCAACTGTTGAGCGAATTTTGCGAGTGA
rJMSF047H24+          TGCCTGAATTGTTTGATGAACAAAAAGAGCAAGCAACTGTTGAGCGAATTTTGCGAGTGA
                      ____________________________________________________________
consensus             TGCCTGAATTGTTTGATGAACAAAAAGAGCAAGCAACTGTTGAGCGAATTTTGCGAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H24-           TTTTCCTGGACCCAGAGCGCCCTTCTTCAGCACTGGATAAG                   
rJMSF047H24+          TTTTCCTGGACCCAGAGCGCCCTTCTTCAGCACTGGATAAGCTGAAGCGTCAGTTGGCTG
                      ____________________________________________________________
consensus             TTTTCCTGGACCCAGAGCGCCCTTCTTCAGCACTGGATAAGCTGAAGCGTCAGTTGGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047H24+          AAGCTGATGCTGCAACAGAAGCTTGCAAGAAACCTCCAGCTGATACGGGCCCAAAAGTTG
                      ____________________________________________________________
consensus             AAGCTGATGCTGCAACAGAAGCTTGCAAGAAACCTCCAGCTGATACGGGCCCAAAAGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047H24+          TTGGAGAAGGCCTTGTAATTGATGAATGGAAGGAGCGGAGGGAAAAATATCTTGCTCGTC
                      ____________________________________________________________
consensus             TTGGAGAAGGCCTTGTAATTGATGAATGGAAGGAGCGGAGGGAAAAATATCTTGCTCGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047H24+          AACAAATTGAGGAAGTGGAATCAAAATAGAGCTATCTCTCTCCCTCTCCCTCTCTCTCTC
                      ____________________________________________________________
consensus             AACAAATTGAGGAAGTGGAATCAAAATAGAGCTATCTCTCTCCCTCTCCCTCTCTCTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047H24+          TCTCTAGTGTTTTTGGGTGTAAGTGAGTGAATGGAATATCATGCCAAAACCACCCCTTTA
                      ____________________________________________________________
consensus             TCTCTAGTGTTTTTGGGTGTAAGTGAGTGAATGGAATATCATGCCAAAACCACCCCTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047H24+          ATGGTGGAGAAGGGCTGTGTTGTGCATCATGTATAGATGAATAATGTGACCTGGAGATTA
                      ____________________________________________________________
consensus             ATGGTGGAGAAGGGCTGTGTTGTGCATCATGTATAGATGAATAATGTGACCTGGAGATTA