Contig 012758:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033P03Sequence581002242 (13)ref|XP_011102070.1|2e-82PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 766012758 (5)emb|CAN61169.1|2e-104hypothetical protein VITISV_010446 [Vitis vinifera]
JMSF023J24Sequence576002242 (13)ref|XP_011102070.1|1e-75PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 767012758 (5)ref|XP_009758721.1|3e-105PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650
JMSF042H21Sequence790002242 (13)ref|XP_011102070.1|4e-115PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 735012758 (5)emb|CAN61169.1|8e-97hypothetical protein VITISV_010446 [Vitis vinifera]
JMSF047G19Sequence687002242 (13)ref|XP_011102070.1|9e-82PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 793012758 (5)emb|CAN61169.1|2e-104hypothetical protein VITISV_010446 [Vitis vinifera]
JMSF048B12Sequence704002242 (13)ref|XP_011102070.1|1e-81PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 779012758 (5)ref|XP_006358077.1|1e-111PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650

Alignment

This contig is upended


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rJMSF048B12+                                                       TGCTCATGCTATTTT
                      ____________________________________________________________
consensus                                                          TGCTCATGCTATTTT
 
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rJMFF033P03+                                AAAATAGATTGCCTTTCTAGACAAAGAATCTGTCTTGG
rJMSF048B12+          TGGTTCAGAAGAGTGTCAACCGAAAATAGATTGNCCTTCTAGACAAAGAATCTGTCTTGG
rJMSF023J24+                                                   GACAAAGAATCTGTCTCGG
rJMSF047G19+           GGTTCAGAAGAGTGTCANCCGAAAATAGATTG-CCTTCTAGACAAAGAATCTGTCTTGG
                      ____________________________________________________________
consensus             TGGTTCAGAAGAGTGTCAACCGAAAATAGATTGCCCTTCTAGACAAAGAATCTGTCTTGG
 
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rJMFF033P03+          TATTGCAAAAGGTTTAGTTTTTCTGCATGAAGAATCANCAATAAAAATTGTTCATAGAGA
rJMSF048B12+          TATTGCAAAAGGTTTAGTTTTTCTGCATGAAGAATCAACAATAAAAATTGTTCATAGAGA
rJMSF042H21+                      TTTAGTTTTTCTGCATGAAGAATCAACAATAAAAATTGTTCATAGAGA
rJMSF023J24+          TATTGCAAAAGGTTTAGCTTTTTTGCATGAAGAATCAGCAATAAAGATTGTTCATAGAGA
rJMSF047G19+          TATTGCAAAAGGTTTAGTTTTTCTGCATGAAGAATCAACAATAAAAATTGTTCATAGAGA
                      ____________________________________________________________
consensus             TATTGCAAAAGGTTTAGTTTTTCTGCATGAAGAATCAACAATAAAAATTGTTCATAGAGA
 
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rJMFF033P03+          CATAAAAGCCACCAATGTGCTTCTTGACAAAGAACTCGATCCAAAGATTTCTGACTTTGG
rJMSF048B12+          CATAAAAGCCACCAATGTGCTTCTTGACAAAGAACTCGATCCAAAGATTTCTGACTTTGG
rJMSF042H21+          CATAAAAGCCACCAATGTGCTTCTTGACAAAGAACTCGATCCAAAGATTTCTGACTTTGG
rJMSF023J24+          CATAAAAGCCACCAATGTGCTTCTTGACAAAGAACTCAATCCAAAAATTTCTGATTTTGG
rJMSF047G19+          CATAAAAGCCACCAATGTGCTTCTTGACAAAGAACTCGATCCAAAGATTTCTGACTTTGG
                      ____________________________________________________________
consensus             CATAAAAGCCACCAATGTGCTTCTTGACAAAGAACTCGATCCAAAGATTTCTGACTTTGG
 
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rJMFF033P03+          CCTAGCTAAACTTAACGATGATGGGAATACACATATTAGCACAAGAGTTGCCGGGACAAT
rJMSF048B12+          CCTAGCTAAACTTAACGATGATGGGAATACACATATTAGCACAAGAGTTGCCGGGACAAT
rJMSF042H21+          CCTAGCTAAACTTAACGATGATGGGAATACACATATTAGCACAAGAGTTGCCGGGACAAT
rJMSF023J24+          CCTTGCTAAACTTAACGATGATGGGAATACACATATTAGCACAAGAGTTGCAGGGACAAT
rJMSF047G19+          CCTAGCTAAACTTAACGATGATGGGAATACACATATTAGCACAAGAGTTGCCGGGACAAT
                      ____________________________________________________________
consensus             CCTAGCTAAACTTAACGATGATGGGAATACACATATTAGCACAAGAGTTGCCGGGACAAT
 
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rJMFF033P03+          AGGATACATGGCTCCTGAATATGCAATGTGGGGCTACTTAACATACAAAGTAGATGTCTA
rJMSF048B12+          AGGATACATGGCTCCTGAATATGCAATGTGGGGCTACTTAACATACAAAGTAGATGTCTA
rJMSF042H21+          AGGATACATGGCTCCTGAATATGCAATGTGGGGCTACTTAACATACAAAGTAGATGTCTA
rJMSF023J24+          AGGATACATGGCTCCTGAATATGCAATGTGGGACTACTTAACATACAAAGCAGATGTCTA
rJMSF047G19+          AGGATACATGGCTCCTGAATATGCAATGTGGGGCTACTTAACATACAAAGTAGATGTCTA
                      ____________________________________________________________
consensus             AGGATACATGGCTCCTGAATATGCAATGTGGGGCTACTTAACATACAAAGTAGATGTCTA
 
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rJMFF033P03+          TAGTTTCGGAATAGTGGCACTAGAAATTGTTGCAGGGAAGAGCAACATGAAGTATCGTCC
rJMSF048B12+          TAGTTTCGGAATAGTGGCACTAGAAATTGTTGCAGGGAAGAGCAACATGAAGTATCGTCC
rJMSF042H21+          TAGTTTCGGAATAGTGGCACTAGAAATTGTTGCAGGGAAGAGCAACATGAAGTATCGTCC
rJMSF023J24+          TAGTTTCGGTGTAGTGGCACTAGAAATTGTTGCAGGGAAGAGCAACATGAAGTATCGTCC
rJMSF047G19+          TAGTTTCGGAATAGTGGCACTAGAAATTGTTGCAGGGAAGAGCAACATGAAGTATCGTCC
                      ____________________________________________________________
consensus             TAGTTTCGGAATAGTGGCACTAGAAATTGTTGCAGGGAAGAGCAACATGAAGTATCGTCC
 
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rJMFF033P03+          TGATGAGAACTTTATTTGCATCCTTGATTGGGCACTTGATCTTCAAAAAAAGGGGAACCT
rJMSF048B12+          TGATGAGAACTTTATTTGCATCCTTGATTGGGCACTTGATCTTCAAAAAAAGGGGAACCT
rJMSF042H21+          TGATGAGAACTTTATTTGCATCCTTGATTGGGCACTTGATCTTCAAAAAAAGGGGAACCT
rJMSF023J24+          TGATGAGAAATTTATTTGCATCCTTGATTGGGCACTTGATCTTCAGAAAAAGGGGAACCT
rJMSF047G19+          TGATGAGAACTTTATTTGCATCCTTGATTGGGCACTTGATCTTCAAAAAAAGGGGAACCT
                      ____________________________________________________________
consensus             TGATGAGAACTTTATTTGCATCCTTGATTGGGCACTTGATCTTCAAAAAAAGGGGAACCT
 
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rJMFF033P03+          AATGGAGCTAATAGATCCAAGGTTGGGTTCGGAATTTAACAAAGAAGAAGCACTCAGAAT
rJMSF048B12+          AATGGAGCTAATAGATCCAAGGTTGGGTTCGGAATTTAACAAAGAAGAAGCACTCAGAAT
rJMSF042H21+          AATGGAGCTAATAGATCCAAGGTTGGGTTCGGAATTTAACAAAGAAGAAGCACTCAGAAT
rJMSF023J24+          AATGGAGCTAATTGATCCAAAATTGGGTTCTGATTTTGACAAAGAAGAAGCACTCAGAAT
rJMSF047G19+          AATGGAGCTAATAGATCCAAGGTTGGGTTCGGAATTTAACAAAGAAGAAGCACTCAGAAT
                      ____________________________________________________________
consensus             AATGGAGCTAATAGATCCAAGGTTGGGTTCGGAATTTAACAAAGAAGAAGCACTCAGAAT
 
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rJMFF033P03+          GATCAAAGTGGCTCTACTTTGTACTAATCCTTCACCAGTCCTAAGGCCATCCATGTCTGC
rJMSF048B12+          GATCAAAGTGGCTCTACTTTGTACTAATCCTTCACCAGTCCTAAGGCCATCCATGTCTGC
rJMSF042H21+          GATCAAAGTGGCTCTACTTTGTACTAATCCTTCACCAGTCCTAAGGCCATCCATGTCTGC
rJMSF023J24+          GACCAGAGTGGCTCTGCTTTGTACTAATCCTTCACCAGTCCTAAGGCCATCCATGTCTGA
rJMSF047G19+          GATCAAAGTGGCTCTACTTTGTACTAATCCTTCACCAGTCCTAAGGCCATCCATGTCTGC
                      ____________________________________________________________
consensus             GATCAAAGTGGCTCTACTTTGTACTAATCCTTCACCAGTCCTAAGGCCATCCATGTCTGC
 
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rJMFF033P03+          AGTAGTCAGTATGCTTGAAGGCCATGATGATATTCTCGAGTACAAATTCGATCAACATGA
rJMSF048B12+          AGTAGTCAGTATGCTTGAAGGCCATGATGATATTCTCGAGTACAAATTCGATCAACATGA
rJMSF042H21+          AGTAGTCAGTATGCTTGAAGGCCATGATGATATTCTCGAGTACAAATTCGATCAACATGA
rJMSF023J24+          AGTAGTCAGAATGCTTGAAGACCATGATGATATTCTTGAGTACAAATCCGATCTACATGA
rJMSF047G19+          AGTAGTCAGTATGCTTGAAGGCCATGATGATATTCTCGAGTACAAATTCGATCAACATGA
                      ____________________________________________________________
consensus             AGTAGTCAGTATGCTTGAAGGCCATGATGATATTCTCGAGTACAAATTCGATCAACATGA
 
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rJMFF033P03+          ATTCAACTTTCAAGCAATGAGAGATCAATATGATGAAATGCTAGTCAATTCAAGCGACTG
rJMSF048B12+          ATTCAACTTTCAAGCAATGAGAGATCAATATGATGAAATGCTAGTCAATTCAAGCGACTG
rJMSF042H21+          ATTCAACTTTCAAGCAATGAGAGATCAATATGATGAAATGCTAGTC              
rJMSF023J24+          ATTCAACTTTCAAGCAATAAGAAATCATTATGATGAAATGCTAGTTAATTCAAGCGATTC
rJMSF047G19+          ATTCAACTTTCAAGCAATGAGAGATCAATATGATGAAATGCTAGTCAATTCAAGCGACTG
                      ____________________________________________________________
consensus             ATTCAACTTTCAAGCAATGAGAGATCAATATGATGAAATGCTAGTCAATTCAAGCGACTG
 
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rJMFF033P03+          TCCAAACATCTCAGAGTGCATATATCTAAATGAGGAATTACAGTAGTTCGTGGTGTTAGA
rJMSF048B12+          TCCAAACATCTCAGAGTGCATATATCTAAATGAGGAATTACAGTAGTTCGTGGTGTTAGA
rJMSF023J24+          TCCAAACATCTCAGAGTGCACATATCTAAATATGGAATTACAATAGTCCGTGGTGTTAGA
rJMSF047G19+          TCCAAACATCTCAGAGTGCATATATCTAAATGAGGAATTACAGTAGTTCGTGGTGTTAGA
                      ____________________________________________________________
consensus             TCCAAACATCTCAGAGTGCATATATCTAAATGAGGAATTACAGTAGTTCGTGGTGTTAGA
 
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rJMFF033P03+          AAATATTGATTTTTGGTGTAAGAAAACACAAGGAAAAA                      
rJMSF048B12+          AAATATTGATTTTTGGTGTAAGAAAACACAAGGAAAAACAAGAT                
rJMSF023J24+          AAATATTGGTTTTTGGTGTAAAAAAAGTCAAGGAAAAACAAGATTCAATAATTTT     
rJMSF047G19+          AAATATTGATTTTTGGTGTAAGAAAACGCAAGGAAAAACAAGATTCAATAATTTTATGTG
                      ____________________________________________________________
consensus             AAATATTGATTTTTGGTGTAAGAAAACACAAGGAAAAACAAGATTCAATAATTTTATGTG