Contig 012757:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF047E08Sequence366020102564012757 (2)
JMSF048E08Sequence230005128 (8)ref|WP_001474279.1|3e-26marC integral membrane family protein [Escherichia coli] gb|ENC40766.1| marC int477012757 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF047E08+ TGGGTTTTTTTTTTNNNGNAAAAA
                      ____________________________________________________________
consensus TGGGTTTTTTTTTTNNNGNAAAAA
 
. : . : . : . : . : . :
rJMSF048E08+ GGGGCCAAAAAAAAAAAAAAGAAGAGAT
rJMSF047E08+ NCNACNGGGGNNGGGNNGGGGTTTTTTTNNAAGGGGCCNAAAAAAAAAAAAAGAAGAGAT
                      ____________________________________________________________
consensus NCNACNGGGGNNGGGNNGGGGTTTTTTTNNAAGGGGCCAAAAAAAAAAAAAAGAAGAGAT
 
. : . : . : . : . : . :
rJMSF048E08+ TATTGGAGAAATCAGTAATTTATTTGAAAGATCTTGGTTACAATATACATGCNTGTNTGA
rJMSF047E08+ TATTGGAGAAATCAGTAATTTATTTGAAAGATCTTGGTTACAATATACATGCNTGTNTGA
                      ____________________________________________________________
consensus TATTGGAGAAATCAGTAATTTATTTGAAAGATCTTGGTTACAATATACATGCNTGTNTGA
 
. : . : . : . : . : . :
rJMSF048E08+ TACATCATCAGATCTGGGATNTTAATCGNGANGTGGTCAGNTTTCAAACCTAAAAAACAT
rJMSF047E08+ TACATCNTCAGATCTGGGATCTTAATCGNGANGTGGTCAGNTTTCAAACCTAAAAAACAT
                      ____________________________________________________________
consensus TACATCATCAGATCTGGGATCTTAATCGNGANGTGGTCAGNTTTCAAACCTAAAAAACAT
 
. : . : . : . : . : . :
rJMSF048E08+ GGATNTAAGCTAGTATATATTAATGATGTATNNTGNTTTTATANATATTTGAAGNNTAAT
rJMSF047E08+ GGATCTNAGCTAGTATATATTAATGATGTATNTTGTTTTTATANATATNTGAAGNNTAAT
                      ____________________________________________________________
consensus GGATCTAAGCTAGTATATATTAATGATGTATNTTGTTTTTATANATATTTGAAGNNTAAT
 
. : . : . : . : . : . :
rJMSF048E08+ TCCAGTGTTTTTNTTACNTACAAACGATTTCAAACCTCACACAGATTTGGATTAATGGGT
rJMSF047E08+ TCCAGTGTTTTTNTTACNTACAAACGATTTCAAACCTCACACAGATTTGGATTAATGGGT
                      ____________________________________________________________
consensus TCCAGTGTTTTTNTTACNTACAAACGATTTCAAACCTCACACAGATTTGGATTAATGGGT
 
. : . : . : . : . : . :
rJMSF048E08+ AACTATATNAACCCTAAATTGTATATTAATTTAAAATGAAATNTTTTTAAAANTCCTTAA
rJMSF047E08+ AACTATATNAACCCTAAATTGTATATTAATTTAAAATGAAAAATTTTTAAAATTCTTTAA
                      ____________________________________________________________
consensus AACTATATNAACCCTAAATTGTATATTAATTTAAAATGAAATATTTTTAAAATTCTTTAA
 
. : . : . : . : . : . :
rJMSF048E08+ TTTGTAATTACATATATTATTCNTTTANGGATTGATTNTTTTCAATGCAGGT
rJMSF047E08+ TTTGTAATTACATATATTNTTCTTTTANNGATTGATTTTTTTCNATGCAGGTATGAAGCC
                      ____________________________________________________________
consensus TTTGTAATTACATATATTATTCTTTTANGGATTGATTTTTTTCAATGCAGGTATGAAGCC
 
. : . : . : . : . : . :
rJMSF047E08+ GTATAGTAGAAAACNNTGTGGAGTTNCNGAAAATGCATATAGATCTTATGAATAGTNTAA
                      ____________________________________________________________
consensus GTATAGTAGAAAACNNTGTGGAGTTNCNGAAAATGCATATAGATCTTATGAATAGTNTAA
 
. : . : . : . : . : . :
rJMSF047E08+ GATAAGTAAAAATCACATCTTCAATAATGTANATTTTTACCGTAATAAAGAATAATAGAA
                      ____________________________________________________________
consensus GATAAGTAAAAATCACATCTTCAATAATGTANATTTTTACCGTAATAAAGAATAATAGAA