Contig 012748:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024O13Sequence522000676 (4)ref|XP_009800757.1|3e-14PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X1 [Nicotiana syl771012748 (4)ref|XP_009625987.1|1e-62PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Nicotiana tomentosiformi
JMSF014I16Sequence497000676 (4)ref|XP_009800757.1|1e-08PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X1 [Nicotiana syl793012748 (4)ref|XP_009625987.1|9e-65PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Nicotiana tomentosiformi
JMSF046D16Sequence786000676 (4)ref|XP_009800759.1|1e-57PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X2 [Nicotiana syl800012748 (4)ref|XP_009798332.1|6e-29PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like isoform X2 [Nicotian
JMSF047G05Sequence703000676 (4)ref|XP_009800757.1|1e-39PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X1 [Nicotiana syl755012748 (4)ref|XP_009798332.1|3e-31PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like isoform X2 [Nicotian

Alignment

This contig is upended


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rJMSF014I16+                                                            GTTCGACATA
                      ____________________________________________________________
consensus                                                               GTTCGACATA
 
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rJMSF014I16+          TGATTTTGTGCCGAGTTATTATGGAAACATGGAGCCAGTTTACCTTGGATCTAAGCAGTT
                      ____________________________________________________________
consensus             TGATTTTGTGCCGAGTTATTATGGAAACATGGAGCCAGTTTACCTTGGATCTAAGCAGTT
 
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rJMSF014I16+          CCATCCCAGTAATGAGGCCTTTGATAATGGTGTAGATGATCCTCAAAATCCGAAGCATTA
                      ____________________________________________________________
consensus             CCATCCCAGTAATGAGGCCTTTGATAATGGTGTAGATGATCCTCAAAATCCGAAGCATTA
 
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rJMSF014I16+          CATAATATGGAGTATGAATATGAATACTCATGTTTATCCGGAATATGTTGTTAGTTTCAA
                      ____________________________________________________________
consensus             CATAATATGGAGTATGAATATGAATACTCATGTTTATCCGGAATATGTTGTTAGTTTCAA
 
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rJMSF014I16+          GCTTTCTTCTGAAGTTGAAGGAGCAGTGGTTCAAAGTGAGAGCCTGAATGATGTTTCAGG
rJMSF047G05+                            AGGAGCAGTGGTTCAAAGTGAGAGCCTGAATGATGTTTCAGG
rJMFF024O13+                            AGGAGCAGTGGTTCAAAGTGAGAGCCTGAATGATGTTTCAGG
rJMSF046D16+                              GAGCAGTGGTTCAAAGTGAGAGCCTGAATGATGTTTCAGG
                      ____________________________________________________________
consensus             GCTTTCTTCTGAAGTTGAAGGAGCAGTGGTTCAAAGTGAGAGCCTGAATGATGTTTCAGG
 
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rJMSF014I16+          GGTTACTACTGTTCAGGGGTCATCATATCAGGCAAATGACAACCATCAAATTTTACTCCA
rJMSF047G05+          GGTTACTACTGTTCAGGGGTCATCATATCAGGCAAATGACAACCATCAAATTTTACTCCA
rJMFF024O13+          GGTTACTACTGTTCAGGGGTCATCATATCAGGCAAATGACAACCATCAAATTTTACTCCA
rJMSF046D16+          GGTTACTACTGTTCAGGGGTCATCATATCAGGCAAATGACAACCATCAAATTTTACTCCA
                      ____________________________________________________________
consensus             GGTTACTACTGTTCAGGGGTCATCATATCAGGCAAATGACAACCATCAAATTTTACTCCA
 
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rJMSF014I16+          AAAGCCTCAAGGGAATGTTCCTAGGATCCCAAAGTCCCCCTGGATGTCATTCCCCGTGTT
rJMSF047G05+          AAAGCCTCAAGGGAATGTTCCTAGGATCCCAAAGTCCCCCTGGATGTCATTCCCCGTGTT
rJMFF024O13+          AAAGCCTCAAGGGAATGTTCCTAGGATCCCAAAGTCCCCCTGGATGTCATTCCCCGTGTT
rJMSF046D16+          AAAGCCTCAAGGGAATGTTCCTAGGATCCCAAAGTCCCCCTGGATGTCATTCCCCGTGTT
                      ____________________________________________________________
consensus             AAAGCCTCAAGGGAATGTTCCTAGGATCCCAAAGTCCCCCTGGATGTCATTCCCCGTGTT
 
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rJMSF014I16+          GTTTGCTGCTATATCAGAGAAAGTTGCTCCAGAGAAGATGAAAATTGTTAATAGCAGTTA
rJMSF047G05+          GTTTGCTGCTATATCAGAGAAAGTTGCTCCAGAGAAGATGAAAATTGTTAATAGCAGTTA
rJMFF024O13+          GTTTGCTGCTATATCAGAGAAAGTTGCTCCAGAGAAGATGAAAATTGTTAATAGCAGTTA
rJMSF046D16+          GTTTGCTGCTATATCAGAGAAAGTTGCTCCAGAGAAGATGAAAATTGTTAATAGCAGTTA
                      ____________________________________________________________
consensus             GTTTGCTGCTATATCAGAGAAAGTTGCTCCAGAGAAGATGAAAATTGTTAATAGCAGTTA
 
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rJMSF014I16+          TGAGTTATTCAAGAGTAAAAAGATTAGCCGTGATGAATTGGTGAAAAAGCTGAGGTTGTC
rJMSF047G05+          TGAGTTATTCAAGAGTAAAAAGATTAGCCGTGATGAATTGGTGAAAAAGCTGAGGTTGTC
rJMFF024O13+          TGAGTTATTCAAGAGTAAAAAGATTAGCCGTGATGAATTGGTGAAAAAGCTGAGGTTGTC
rJMSF046D16+          TGAGTTATTCAAGAGTAAAAAGATTAGCCGTGATGAATTGGTGAAAAAGCTGAGGTTGTC
                      ____________________________________________________________
consensus             TGAGTTATTCAAGAGTAAAAAGATTAGCCGTGATGAATTGGTGAAAAAGCTGAGGTTGTC
 
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rJMSF014I16+          TGTTGGGGATACTTTATTGAGGTCCACTATAATGAGTCTTCAGTCCAAGATGCCACCAAA
rJMSF047G05+          TGTTGGGGATACTTTATTGAGGTCCACTATAATGAGTCTTCAGTCCAAGATGCCACCAAA
rJMFF024O13+          TGTTGGGGATACTTTATTGAGGTCCACTATAATGAGTCTTCAGTCCAAGATGCCACCAAA
rJMSF046D16+          TG-TGGGGATACTTTATTGAGGTCCACTATAATGAGTCTTCAGTCCAAGATGCCACCAAA
                      ____________________________________________________________
consensus             TGTTGGGGATACTTTATTGAGGTCCACTATAATGAGTCTTCAGTCCAAGATGCCACCAAA
 
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rJMSF014I16+          ACCTGTTGAATTGGTCACACCAAAACTAGAGCCCTGAAGTTTTTGGCCTCTAAACTGAGG
rJMSF047G05+          ACCTGTTGAATTGGTCACACCAAAACTAGAGCCCTGAAGTTTTTGGCCTCTAAACTGAGG
rJMFF024O13+          ACCTGTTGAATTGGTCACACCAAAACTAGAGCCCTGAAGTTTTTGGCCTCTAAACTGAGG
rJMSF046D16+          ACCTGTTGAATTGGTCACACCAAAACTAGAGCCCTGAAGTTTTTGGCCTCTAAACTGAGG
                      ____________________________________________________________
consensus             ACCTGTTGAATTGGTCACACCAAAACTAGAGCCCTGAAGTTTTTGGCCTCTAAACTGAGG
 
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rJMSF014I16+          TGGCACCAAAAGTTCAGGTTGTCAAGAAAGGGTGGATTTGTTATGTGTATAACAGTATAA
rJMSF047G05+          TGGCACCAAAAGTTCAGGTTGTCAAGAAAGGGTGGATTTGTTATGTGTATAACAGTATAA
rJMFF024O13+          TGGCACCAAAAGTTCAGGTTGTCAAGAAAGGGTGGATTTGTTATGTGTATAACAGTATAA
rJMSF046D16+          TGGCACCAAAAGTTCAGGTTGTCAAGAAAGGGTGGATTTGTTATGTGTATAACAGTATAA
                      ____________________________________________________________
consensus             TGGCACCAAAAGTTCAGGTTGTCAAGAAAGGGTGGATTTGTTATGTGTATAACAGTATAA
 
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rJMSF014I16+          GTAGAGTATGACCTTGAAAATAGCCAATGATTTACCTTGGATTGCTGTTATATGTTGAAA
rJMSF047G05+          GTAGAGTATGACCTTGAAAATAGCCAATGATTTACCTTGGATTGCTGTTATATGTTGAAA
rJMFF024O13+          GTAGAGTATGACCTTGAAAATAGCCAATGATTTACCTTGGATTGCTGTTATATGTTGAAA
rJMSF046D16+          GTAGAGTATGACCTTGAAAATAGCCAATGATTTACCTTGGATTGCTGTTATATGTTGAAA
                      ____________________________________________________________
consensus             GTAGAGTATGACCTTGAAAATAGCCAATGATTTACCTTGGATTGCTGTTATATGTTGAAA
 
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rJMSF014I16+          CTAACTGGAGCTTTGCTTTCTCTCTCCATTTGGCCATGTTATGCTTATTTCTTTCTGTCA
rJMSF047G05+          CTAACTGGAGCTTTGCTTTCTCTCTCCATTTGG-CATGTTATGCTTATTTCTTTCTGTCA
rJMFF024O13+          CTAACTGGAGCTTTGCTTTCTCTCTCCATTTGG-CATGTTATGCTTATTTCTTTCTGTCA
rJMSF046D16+          CTAACTGGAGCTTTGCTTTCTCTCTCCATTTGG-CATGTTATGCTTATTTCTTTCTGTCA
                      ____________________________________________________________
consensus             CTAACTGGAGCTTTGCTTTCTCTCTCCATTTGG-CATGTTATGCTTATTTCTTTCTGTCA
 
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rJMSF014I16+          AGA                                                         
rJMSF047G05+          AGA                                                         
rJMFF024O13+          AGATTGTTGATTAATAATAT                                        
rJMSF046D16+          AGATTGTTGATTAATAATATTGAACCTGTTTCAGGCTTTTATCTTCCTATCTTGTTTGTC
                      ____________________________________________________________
consensus             AGATTGTTGATTAATAATATTGAACCTGTTTCAGGCTTTTATCTTCCTATCTTGTTTGTC
 
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rJMSF046D16+          TTTTTGGTCAGGGAAGCCAATGGTGTATAATTAGTTCTTAAGTTATTGAAAATGTGATAC
                      ____________________________________________________________
consensus             TTTTTGGTCAGGGAAGCCAATGGTGTATAATTAGTTCTTAAGTTATTGAAAATGTGATAC