Contig 012742:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF045B24Sequence702012742 (2)ref|XP_004229200.1|2e-104PREDICTED: protein SRG1 [Solanum lycopersicum] ref|XP_010321064.1| PREDICTED: pr705012742 (2)ref|XP_004229200.1|2e-130PREDICTED: protein SRG1 [Solanum lycopersicum] ref|XP_010321064.1| PREDICTED: pr

Alignment

This contig is upended


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JMSF045B24-                 GATTATATTTCAGAGCTACACCCACCCAAATACAAACATCCACACAACTCTGTA
                      ____________________________________________________________
consensus                   GATTATATTTCAGAGCTACACCCACCCAAATACAAACATCCACACAACTCTGTA
 
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JMSF045B24-           TTCTTTGAGAAAATAATAGTAATAATAATGTCTCCAGCACCAAGTTTTCCTATCAAGGTT
                      ____________________________________________________________
consensus             TTCTTTGAGAAAATAATAGTAATAATAATGTCTCCAGCACCAAGTTTTCCTATCAAGGTT
 
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JMSF045B24-           GGCCACATTGATGATGTCCAAGAATTGGGGAAGACTAGGCCATCTTATATTCCTGAAAGG
                      ____________________________________________________________
consensus             GGCCACATTGATGATGTCCAAGAATTGGGGAAGACTAGGCCATCTTATATTCCTGAAAGG
 
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JMSF045B24-           TTTGTTAGGAACATGACAGAAAGACCAACACTCACTACTTCTCCTCCTTCATGTGACCTT
                      ____________________________________________________________
consensus             TTTGTTAGGAACATGACAGAAAGACCAACACTCACTACTTCTCCTCCTTCATGTGACCTT
 
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JMSF045B24-           AAAATCCCAGTCATCGATTTATCCAAACTCTCCAACCAAAACAACAACAATTCTCAAGAC
                      ____________________________________________________________
consensus             AAAATCCCAGTCATCGATTTATCCAAACTCTCCAACCAAAACAACAACAATTCTCAAGAC
 
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JMSF045B24-           TTCTTCCTCTCTGAACTATCCAACCTCACCCTTGCTTGTCAAGAATGGGGATTTTTTCAG
                      ____________________________________________________________
consensus             TTCTTCCTCTCTGAACTATCCAACCTCACCCTTGCTTGTCAAGAATGGGGATTTTTTCAG
 
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JMSF045B24-           GTGATAAATCATGGGGTTGAGGTGAGTTTACTTGAGAGCATGGAGAGAATGGCTATGGAG
                      ____________________________________________________________
consensus             GTGATAAATCATGGGGTTGAGGTGAGTTTACTTGAGAGCATGGAGAGAATGGCTATGGAG
 
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JMSF045B24-           TTTTTCATGATGCCTTTGGAGGAGAAGCAGAAATATCCAATGGCCCCAGGAAGTGTGCAG
                      ____________________________________________________________
consensus             TTTTTCATGATGCCTTTGGAGGAGAAGCAGAAATATCCAATGGCCCCAGGAAGTGTGCAG
 
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JMSF045B24-           GGATATGGTCAAGCATTTGTTTTCTCTGAGGACCAAAAGCTTGATTGGTGCAACATGTTT
                      ____________________________________________________________
consensus             GGATATGGTCAAGCATTTGTTTTCTCTGAGGACCAAAAGCTTGATTGGTGCAACATGTTT
 
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JMSF045B24-           GCACTTGGACTAGAGCCCCATTACAGTAGAAACCCTAAACTCTGGCCCACAAAGCCAGCT
rJMSF045B24+                         CCCCATTACAGTAGAAACCCTAAACTCTGGCCCACAAAGCCAGCT
                      ____________________________________________________________
consensus             GCACTTGGACTAGAGCCCCATTACAGTAGAAACCCTAAACTCTGGCCCACAAAGCCAGCT
 
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JMSF045B24-           GCTTTCAGTGAAACAGTGGAGGCATACTCAAGAGAAGTAAGGAAACTATGCAAGAAATTG
rJMSF045B24+          GCTTTCAGTGAAACAGTGGAGGCATACTCAAGAGAAGTAAGGAAACTATGCAAGAAATTG
                      ____________________________________________________________
consensus             GCTTTCAGTGAAACAGTGGAGGCATACTCAAGAGAAGTAAGGAAACTATGCAAGAAATTG
 
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JMSF045B24-           TTGAAATACATAGCCACAAGCCTGGGGTTGAGTGGGGATGTGTTTGAA            
rJMSF045B24+          TTGAAATACATAGCCACAAGCCTGGGGTTGAGTGGGGATGTGTTTGAAGAAATGTTTGGA
                      ____________________________________________________________
consensus             TTGAAATACATAGCCACAAGCCTGGGGTTGAGTGGGGATGTGTTTGAAGAAATGTTTGGA
 
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rJMSF045B24+          GTGGCTGTCCAAGCAGTAAGGATGAACTATTACCCACCATGCCCCAGGCCAGACCTTGTT
                      ____________________________________________________________
consensus             GTGGCTGTCCAAGCAGTAAGGATGAACTATTACCCACCATGCCCCAGGCCAGACCTTGTT
 
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rJMSF045B24+          CTGGGGCTCAGCCCCCACTCTGATGGAAGTGCCATTACAGTGTTACAACAGGGAAAGTGC
                      ____________________________________________________________
consensus             CTGGGGCTCAGCCCCCACTCTGATGGAAGTGCCATTACAGTGTTACAACAGGGAAAGTGC
 
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rJMSF045B24+          AGCAACTCAGTTGGACTTCAGATACTCAAGGACAATGCTTGGATTCCTGTTCAGCCTATC
                      ____________________________________________________________
consensus             AGCAACTCAGTTGGACTTCAGATACTCAAGGACAATGCTTGGATTCCTGTTCAGCCTATC
 
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rJMSF045B24+          CCAAATGCTCTTGTCATTAATATTGGAGACACCATAGAGGTTCTAACAAATGGAAGATAC
                      ____________________________________________________________
consensus             CCAAATGCTCTTGTCATTAATATTGGAGACACCATAGAGGTTCTAACAAATGGAAGATAC
 
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rJMSF045B24+          AAGAGTGTGGAGCATAGAGCAGTGACAGACAAAGAAAAGGACAGGCTTTCAATTGTCACA
                      ____________________________________________________________
consensus             AAGAGTGTGGAGCATAGAGCAGTGACAGACAAAGAAAAGGACAGGCTTTCAATTGTCACA
 
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rJMSF045B24+          TTTTATGCCCCAAGCTATGAAATAGAGGTGGGGCCAATGCCAGAATTAGTGGATGAAACC
                      ____________________________________________________________
consensus             TTTTATGCCCCAAGCTATGAAATAGAGGTGGGGCCAATGCCAGAATTAGTGGATGAAACC
 
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rJMSF045B24+          AACAACAACCCCTCCAAGTACAGAAGATATAACCATGGAGATTACAGCAGACATTATGTT
                      ____________________________________________________________
consensus             AACAACAACCCCTCCAAGTACAGAAGATATAACCATGGAGATTACAGCAGACATTATGTT
 
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rJMSF045B24+          ACCAACAAGCTTCAAGGCAAGAAAACCTTGGAATTTGCCAAGATTATTAATTAACTAATA
                      ____________________________________________________________
consensus             ACCAACAAGCTTCAAGGCAAGAAAACCTTGGAATTTGCCAAGATTATTAATTAACTAATA
 
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rJMSF045B24+          ACTAATCTCACAATTGTTAGTTGCCCTATTTGTAACATAATGTCATTAATGTAGTACAAC
                      ____________________________________________________________
consensus             ACTAATCTCACAATTGTTAGTTGCCCTATTTGTAACATAATGTCATTAATGTAGTACAAC