Contig 012738:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044L01Sequence747012738 (2)ref|XP_002285717.1|3e-85PREDICTED: purine permease 1 [Vitis vinifera] emb|CAN64392.1| hypothetical prote762012738 (2)gb|KJB58946.1|3e-83hypothetical protein B456_009G232400 [Gossypium raimondii]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-                                 GGACTTCCGAGNTGAGATCTGAAAGCATTGAAAATGGA
                      ____________________________________________________________
consensus                                   GGACTTCCGAGNTGAGATCTGAAAGCATTGAAAATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           GGGCCAAACGAGAACAACAATGAGGAGAATCCTCCTTTTCTTGTCCTGTATAATCTTATC
                      ____________________________________________________________
consensus             GGGCCAAACGAGAACAACAATGAGGAGAATCCTCCTTTTCTTGTCCTGTATAATCTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           CATCGGAAACTGCGGCGGCCCTTTGCTCATACGCCTCTACTTCCTCCGAGGCGGCAACCG
                      ____________________________________________________________
consensus             CATCGGAAACTGCGGCGGCCCTTTGCTCATACGCCTCTACTTCCTCCGAGGCGGCAACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           GATATGGTTTTCCAGCTGGCTACAAACCGCCGGCTTCCCGGTCATTTTCATCCCGCTTCT
                      ____________________________________________________________
consensus             GATATGGTTTTCCAGCTGGCTACAAACCGCCGGCTTCCCGGTCATTTTCATCCCGCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           CGTATCTTATCACCGCCGCCGGCGAGCTTGTAGCGATGAAAGCTCCAAAAGCAGGAAGTT
                      ____________________________________________________________
consensus             CGTATCTTATCACCGCCGCCGGCGAGCTTGTAGCGATGAAAGCTCCAAAAGCAGGAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           CTTCCTAATCACACCGTTTTTGTCCATCGCCGCCGCACTACTCGGCGTTCTCGTAGGCGT
                      ____________________________________________________________
consensus             CTTCCTAATCACACCGTTTTTGTCCATCGCCGCCGCACTACTCGGCGTTCTCGTAGGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           GGACAACTATTTCTACTCCTACGGCATGGCAAAGCTTCCTGTGTCGACCTCGTCTCTCAT
                      ____________________________________________________________
consensus             GGACAACTATTTCTACTCCTACGGCATGGCAAAGCTTCCTGTGTCGACCTCGTCTCTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           CGTAGCCACCCAGCTGGTCTTCACGGCCGGATTCGCTTTCCTCCTCGTGAAGCAAAAGTT
rJMSF044L01+                            CTTCACGGCCGGATTCGCTTTCCTCCTCGTGAAGCAAAAGTT
                      ____________________________________________________________
consensus             CGTAGCCACCCAGCTGGTCTTCACGGCCGGATTCGCTTTCCTCCTCGTGAAGCAAAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           CACGGCGTTTTCGACAAACGCCGTGGTATTATTGACAGTCGGGGCGGTGGTGTTGGGGCT
rJMSF044L01+          CACGGCGTTTTCGACAAACGCCGTGGTATTATTGACAGTCGGGGCGGTGGTGTTGGGGCT
                      ____________________________________________________________
consensus             CACGGCGTTTTCGACAAACGCCGTGGTATTATTGACAGTCGGGGCGGTGGTGTTGGGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           CCGAGCCGGAAGTGACCGCCCGGCTGGAGAGTCAAACAAGGCCTATCTTTTAGGGTTCGT
rJMSF044L01+          CCGAGCCGGAAGTGACCGCCCGGCTGGAGAGTCAAACAAGGCCTATCTTTTAGGGTTCGT
                      ____________________________________________________________
consensus             CCGAGCCGGAAGTGACCGCCCGGCTGGAGAGTCAAACAAGGCCTATCTTTTAGGGTTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           GATGACTGTGGCTGCGGCGGCGTTGTATGGGTTGATTCTGCCATTGATAGAGCTGAGTTA
rJMSF044L01+          GATGACTGTGGCTGCGGCGGCGTTGTATGGGTTGATTCTGCCATTGATAGAGCTGAGTTA
                      ____________________________________________________________
consensus             GATGACTGTGGCTGCGGCGGCGTTGTATGGGTTGATTCTGCCATTGATAGAGCTGAGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           TTTGAAGGCCAAGCTGCAGGCAGTTAGCTTTAGTTTAGTGTTGGAATTTCAGATGATTAT
rJMSF044L01+          TTTGAAGGCCAAGCTGCAGGCAGTTAGCTTTAGTTTAGTGTTGGAATTTCAGATGATTAT
                      ____________________________________________________________
consensus             TTTGAAGGCCAAGCTGCAGGCAGTTAGCTTTAGTTTAGTGTTGGAATTTCAGATGATTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L01-           GGGTTTTGTCGGTACTATTTTCTCCACTGTCGGAATGGTCATAAACAAG           
rJMSF044L01+          GGGTTTTGTCGGTACTATTTTCTCCACTGTCGGAATGGTCATAAACAAGGATTTTGAGGT
                      ____________________________________________________________
consensus             GGGTTTTGTCGGTACTATTTTCTCCACTGTCGGAATGGTCATAAACAAGGATTTTGAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044L01+          AATTCCAAGGGAGGCAAGGGAATTTGAACTGGGAGTAACAAAATACTACGTATTAGCCGT
                      ____________________________________________________________
consensus             AATTCCAAGGGAGGCAAGGGAATTTGAACTGGGAGTAACAAAATACTACGTATTAGCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044L01+          ATTTACTGCGATTGTATGGCAATTCTTCTTTGTGGGAGCTCTTGGAGTCATCTCCTACGG
                      ____________________________________________________________
consensus             ATTTACTGCGATTGTATGGCAATTCTTCTTTGTGGGAGCTCTTGGAGTCATCTCCTACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044L01+          TTCATCATTGCTCTCAGCTCTCATAGTCGCGGTTCTGCTCCCCGTAACGGAGATCTTGGC
                      ____________________________________________________________
consensus             TTCATCATTGCTCTCAGCTCTCATAGTCGCGGTTCTGCTCCCCGTAACGGAGATCTTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044L01+          CGTCATCTTCTACCATGAGAAGTTCGAAGCCGAGAAAGGCATCTCTCTGTTCCTCTCAAT
                      ____________________________________________________________
consensus             CGTCATCTTCTACCATGAGAAGTTCGAAGCCGAGAAAGGCATCTCTCTGTTCCTCTCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044L01+          CTGGGGATTTGTTTCTTATTTTTACGGCGATATTAAGAATACCAAAAAAGATAATAATGA
                      ____________________________________________________________
consensus             CTGGGGATTTGTTTCTTATTTTTACGGCGATATTAAGAATACCAAAAAAGATAATAATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044L01+          ATCATCTGCAGAAACAGAGATGACCAGTGCTCCAACCGTTGCTTCCACGCAAGCAGTATA
                      ____________________________________________________________
consensus             ATCATCTGCAGAAACAGAGATGACCAGTGCTCCAACCGTTGCTTCCACGCAAGCAGTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044L01+          AAAGAACCTAAGCTATCCTAGCTTCTTTTCATATGTATGAAAATATATGTATGTGCGTGC
                      ____________________________________________________________
consensus             AAAGAACCTAAGCTATCCTAGCTTCTTTTCATATGTATGAAAATATATGTATGTGCGTGC