Contig 012736:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021L17Sequence687003536 (3)ref|XP_009788569.1|3e-59PREDICTED: DNA ligase 1-like [Nicotiana sylvestris]730012736 (3)ref|XP_010111844.1|7e-109DNA ligase 1 [Morus notabilis] gb|EXC31809.1| DNA ligase 1 [Morus notabilis]
JMSF044E07Sequence798003536 (3)ref|XP_009788569.1|9e-98PREDICTED: DNA ligase 1-like [Nicotiana sylvestris]800012736 (3)emb|CDP14619.1|7e-116unnamed protein product, partial [Coffea canephora]
JMSF051J01Sequence416022269698012736 (3)ref|XP_009788569.1|4e-115PREDICTED: DNA ligase 1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF044E07+                                                 AAGCTGCTGTTAATGGCAGTT
                      ____________________________________________________________
consensus                                                    AAGCTGCTGTTAATGGCAGTT
 
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rJMSF021L17+                                                  ATATGAGCNTTCAAAACGAT
rJMSF051J01+                   TGATCATCAAANCATTGAGTGGAGATTCGACATATGAGCCTTCAAAACGAT
rJMSF044E07+          GTGAGGGATTGATCATCAAAACATTGAGTGGAGATTCGACATATGAGCCTTCAAAACGAT
                      ____________________________________________________________
consensus             GTGAGGGATTGATCATCAAAACATTGAGTGGAGATTCGACATATGAGCCTTCAAAACGAT
 
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rJMSF021L17+          CACATAACTGGCTAAAATTGAAAAAAGATTACGTGGAAAGTATTGGAGACTCCCTCGATT
rJMSF051J01+          CACATAACTGGCTAAAATTGAAAAAAGATTACATGGAAAGTATTGGAGACTCCCTCGATT
rJMSF044E07+          CACATAACTGGCTAAAATTGAAAAAAGATTACATGGAAAGTATTGGAGACTCCCTCGATT
                      ____________________________________________________________
consensus             CACATAACTGGCTAAAATTGAAAAAAGATTACATGGAAAGTATTGGAGACTCCCTCGATT
 
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rJMSF021L17+          TGGTACCAATAGCTGCTTTTCATGGCCGAGGGAAACGTACTGGTGTTTATGGAGCTTTTC
rJMSF051J01+          TGGTACCAATAGCTGCTTTTCATGGCCGAGGGAAACGTACTGGTGTTTATGGAGCTTTTC
rJMSF044E07+          TGGTACCAATAGCTGCTTTTCATGGCCGAGGGAAACGTACTGGTGTTTATGGAGCTTTTC
                      ____________________________________________________________
consensus             TGGTACCAATAGCTGCTTTTCATGGCCGAGGGAAACGTACTGGTGTTTATGGAGCTTTTC
 
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rJMSF021L17+          TCCTTGCTTGTTATGATAGTAACAATGAGGAATTCCAAAGCATTTGTAAAATCGGCACTG
rJMSF051J01+          TCCTTGCTTGTTATGATAGTAACAATGAGGAATTCCAAAGCATTTGTAAAATCGGCACTG
rJMSF044E07+          TCCTTGCTTGTTATGATAGTAACAATGAGGAATTCCAAAGCATTTGTAAAATCGGCACTG
                      ____________________________________________________________
consensus             TCCTTGCTTGTTATGATAGTAACAATGAGGAATTCCAAAGCATTTGTAAAATCGGCACTG
 
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rJMSF021L17+          GTTTTTCTGAAACAATGCTTGAAGAACGCTCTGCCAGCCATCGTTCTAAAGTTATCCCCA
rJMSF051J01+          GTTTTTCTGAAACAATGCTTGAAGAACGCTCTGCCAGCCATCGTTCTAAAGTTATCCCCA
rJMSF044E07+          GTTTTTCTGAAACAATGCTTGAAGAACGCTCTGCCAGCCATCGTTCTAAAGTTATCCCCA
                      ____________________________________________________________
consensus             GTTTTTCTGAAACAATGCTTGAAGAACGCTCTGCCAGCCATCGTTCTAAAGTTATCCCCA
 
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rJMSF021L17+          AGCCAAAGTCATATTACAGGTATGCAGAAACACTCGATCCAGATGTATGGTTTGAACCCA
rJMSF051J01+          AGCCAAAGTCATATTACAGGTATGCAGAAACACTCGATCCAGATGTATGGTTTGAACCCA
rJMSF044E07+          AGCCAAAGTCATATTACAGGTATGCAGAAACACTCGATCCAGATGTATGGTTTGAACCCA
                      ____________________________________________________________
consensus             AGCCAAAGTCATATTACAGGTATGCAGAAACACTCGATCCAGATGTATGGTTTGAACCCA
 
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rJMSF021L17+          CTGAGGTTTGGGAGGTGAAAGCTGCGGACCTTACAATCAGCCCTGTGCACCGCGCTGCCA
rJMSF051J01+          CTGAGGTTTGGGAGGTGAAAGCTGCGGACCTTACAATCAGCCCTGTGCACCGCGCTGCCA
rJMSF044E07+          CTGAGGTTTGGGAGGTGAAAGCTGCGGACCTTACAATCAGCCCTGTGCACCGCGCTGCCA
                      ____________________________________________________________
consensus             CTGAGGTTTGGGAGGTGAAAGCTGCGGACCTTACAATCAGCCCTGTGCACCGCGCTGCCA
 
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rJMSF021L17+          TTGGTATTGTGGATCCTGAAAAGGGAATTTCTCTGCGATTTCCTCGCTTGATTCGTATTC
rJMSF051J01+          TTGGTATTGTGGATCCTGAAAAGGGAATTTCTCTGCGATTTCCTCGCTTGATTCGTATTC
rJMSF044E07+          TTGGTATTGTGGATCCTGAAAAGGGAATTTCTCTGCGATTTCCTCGCTTGATTCGTATTC
                      ____________________________________________________________
consensus             TTGGTATTGTGGATCCTGAAAAGGGAATTTCTCTGCGATTTCCTCGCTTGATTCGTATTC
 
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rJMSF021L17+          GAGAAGACAAGACTCCAGAACAGGCCTCAACAGCAGAGATGGTTGCAGATATGTATTCTG
rJMSF051J01+          GAGAAGACAAGACTCCAGAACAGGCCTCAACAGCAGAGATGGTTGCAGATATGTATTCTG
rJMSF044E07+          GAGAAGACAAGACTCCAGAACAGGCCTCAACAGCAGAGATGGTTGCAGATATGTATTCTG
                      ____________________________________________________________
consensus             GAGAAGACAAGACTCCAGAACAGGCCTCAACAGCAGAGATGGTTGCAGATATGTATTCTG
 
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rJMSF021L17+          CTCAGAAACACAATCAACAAAATAATCAGGATGTAGATGAAGAGTGAAGAGGCTTTCTGT
rJMSF051J01+          CTCAGAAACACAATCAACAAAATAATCAGGATGTAGATGAAGAGTGAAGAGGCTTTCTGT
rJMSF044E07+          CTCAG-AACACAATCAACAAAATAATCAGGATGTAGATGAAGAGTGAAGAGGCTTTCTGT
                      ____________________________________________________________
consensus             CTCAGAAACACAATCAACAAAATAATCAGGATGTAGATGAAGAGTGAAGAGGCTTTCTGT
 
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rJMSF021L17+          TTTCACTTATGGGCTTGTACCAGGATGCTTCATTTTACTGCTCTGTAACTTGATTTTTCA
rJMSF051J01+          TTTCACTTATGGGCTTGTACCAGGATGCTTCATTTTACTGCTCTGTAACTTGATTTTTCA
rJMSF044E07+          TTTCACTTATGGGCTTGTACCAGGATGCTTCATTTTACTGCTCTGTAACTTGATTTTTCA
                      ____________________________________________________________
consensus             TTTCACTTATGGGCTTGTACCAGGATGCTTCATTTTACTGCTCTGTAACTTGATTTTTCA
 
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rJMSF021L17+          TGTAAAGTATGACACTTCTTAGAATTTTAAAACAATTTTTTAAAAATATTTTCAATATGT
rJMSF051J01+          TGTAAAGTATGACACTTCTTAGAATTTTAAAACAATTTTTAAAAA               
rJMSF044E07+          TGTAAAGTATGACACTTCTTAGAATTTTAAAACAATTTTTTAAAAATATTTTCAATATGT
                      ____________________________________________________________
consensus             TGTAAAGTATGACACTTCTTAGAATTTTAAAACAATTTTTTAAAAATATTTTCAATATGT
 
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rJMSF021L17+          TGAAGTAGTAGTGATCAAGTGAGTTGA                                 
rJMSF044E07+          TGAAGTAGTAGTGATCAAGTGAGTTGAACATAATGTTACTTGGCACATTATACCCGTAGA
                      ____________________________________________________________
consensus             TGAAGTAGTAGTGATCAAGTGAGTTGAACATAATGTTACTTGGCACATTATACCCGTAGA