Contig 012734:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017G11Sequence494018890ref|XP_009604826.1|2e-54PREDICTED: mitochondrial pyruvate carrier 1-like [Nicotiana tomentosiformis]791012734 (3)ref|XP_007199864.1|1e-94hypothetical protein PRUPE_ppa005829mg [Prunus persica] gb|EMJ01063.1| hypotheti
JMSF043N11Sequence772012734 (3)emb|CBI37656.3|4e-64unnamed protein product [Vitis vinifera]802012734 (3)ref|XP_007199864.1|5e-57hypothetical protein PRUPE_ppa005829mg [Prunus persica] gb|EMJ01063.1| hypotheti

Alignment

This contig is upended


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JMSF043N11-                                                     GATGCATATTCTCTCTCT
                      ____________________________________________________________
consensus                                                       GATGCATATTCTCTCTCT
 
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JMSF043N11-           CTCTCTCTCTCTCTCAGCTCTCAGACAAGTTTTCCTGACAAGACATATTGCGTTAATTAC
                      ____________________________________________________________
consensus             CTCTCTCTCTCTCTCAGCTCTCAGACAAGTTTTCCTGACAAGACATATTGCGTTAATTAC
 
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JMSF043N11-           AGTATATTAGAAAATATATAGTACGAGAAACCGGCGATCAGCTTATGGGTAGCAGTATGC
                      ____________________________________________________________
consensus             AGTATATTAGAAAATATATAGTACGAGAAACCGGCGATCAGCTTATGGGTAGCAGTATGC
 
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JMSF043N11-           TTTTCCCGCCGGTTCAATTGCAGGGTTTGATGAACTATGACGATCAGAATCTCATCCAGA
                      ____________________________________________________________
consensus             TTTTCCCGCCGGTTCAATTGCAGGGTTTGATGAACTATGACGATCAGAATCTCATCCAGA
 
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JMSF043N11-           TTCTGGAGAATTATGGCTGGATTGAACGGCCCTCAGACATTGGAATCAATTACGCACTTT
                      ____________________________________________________________
consensus             TTCTGGAGAATTATGGCTGGATTGAACGGCCCTCAGACATTGGAATCAATTACGCACTTT
 
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JMSF043N11-           CCAGCTGCTCACCAGCCGCCACCTCTGCAGCTGGGAAAAAGAAAGATGACGCTTTTCCGC
                      ____________________________________________________________
consensus             CCAGCTGCTCACCAGCCGCCACCTCTGCAGCTGGGAAAAAGAAAGATGACGCTTTTCCGC
 
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JMSF043N11-           CGGAAAATCTGGGAAGAGAGAGCTTCAAGAGGAGAAAAACCGACAAGGCAGTTGCAGTTG
                      ____________________________________________________________
consensus             CGGAAAATCTGGGAAGAGAGAGCTTCAAGAGGAGAAAAACCGACAAGGCAGTTGCAGTTG
 
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JMSF043N11-           CAGAAGAGGAAAGAAAGGACAGGTGGAAGCAGAAAGGATGCCAAGAAGATGTCAGAAGTT
                      ____________________________________________________________
consensus             CAGAAGAGGAAAGAAAGGACAGGTGGAAGCAGAAAGGATGCCAAGAAGATGTCAGAAGTT
 
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JMSF043N11-           CAGAGCAGACTGACAACAATAGTAAGAAAGAACATAGCACTGACACTTCCAAGGTAACAC
rJMSF017G11+                                       GAACATAGCACTGACACTTCCAAGGTAACAC
                      ____________________________________________________________
consensus             CAGAGCAGACTGACAACAATAGTAAGAAAGAACATAGCACTGACACTTCCAAGGTAACAC
 
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JMSF043N11-           AAGACAAAAAGTCAGACTACATTCATGTCCGGGCACGACGGGGCCAAGCCACTGACAGTC
rJMSF017G11+          AAGACAAAAAGTCAGACTACATTCATGTCCGGGCACGACGGGGCCAAGCCACTGACAGTC
rJMSF043N11+                                                CGGGGCCAAGCCACTGACAGTC
                      ____________________________________________________________
consensus             AAGACAAAAAGTCAGACTACATTCATGTCCGGGCACGACGGGGCCAAGCCACTGACAGTC
 
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JMSF043N11-           ATAGTTTAGCAGAAAGAGTGAGG-AGGGAAAAAATCAGTGAGAGAATGAGATACCTGCAG
rJMSF017G11+          ATAGTTTAGCAGAAAGAGTGAGG-AGGGAAAAAATCAGTGAGAGAATGAGATACCTGCAG
rJMSF043N11+          ATAGTTTAGCAGAAAGAGTGAGGNGGGGANAAAATCAGTGAGAGANTGAGATACCTGCAG
                      ____________________________________________________________
consensus             ATAGTTTAGCAGAAAGAGTGAGG-AGGGAAAAAATCAGTGAGAGAATGAGATACCTGCAG
 
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JMSF043N11-           GATCTAGTACCAGGGTGCAATAAGATCACTGGGAAAGCGGGAATGCTAGATGAGATAATC
rJMSF017G11+          GATCTAGTACCAGGGTGCAATAAGATCACTGGGAAAGCGGGAATGCTAGATGAGATAATC
rJMSF043N11+          GATCTAGTACCAGGGTGCANTAAGATCACTGGGAAAGCGGGAATGCTAGATGAGATAATC
                      ____________________________________________________________
consensus             GATCTAGTACCAGGGTGCAATAAGATCACTGGGAAAGCGGGAATGCTAGATGAGATAATC
 
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JMSF043N11-           AACTATGTCCAGTCACTGCAAAAACAAGTAGAGTTCTTGTCAATGAAACTGGCTGCTGTT
rJMSF017G11+          AACTATGTCCAGTCACTGCAAAAACAAGTAGAGTTCTTGTCAATGAAACTGGCTGCTGTT
rJMSF043N11+          AACTATGTCCAGTCACTGCAAAAACAAGTAGAGTTCTTGTCAATGAAACTGGCTGCTGTT
                      ____________________________________________________________
consensus             AACTATGTCCAGTCACTGCAAAAACAAGTAGAGTTCTTGTCAATGAAACTGGCTGCTGTT
 
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JMSF043N11-           AATCCAAGACTCGATTTCNATATTGACAGTTTATT                         
rJMSF017G11+          AATCCAAGACTCGATTTCAATATTGACAGTTTATTCACCAAAGAGATGTTTCAATCTAGT
rJMSF043N11+          AATCCANGACTCGATTTCAATATTGACAGTTTATTCACCAAAGAGANGTTTCAATCTAGT
                      ____________________________________________________________
consensus             AATCCAAGACTCGATTTCAATATTGACAGTTTATTCACCAAAGAGATGTTTCAATCTAGT
 
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rJMSF017G11+          CCATCTAATTTTCCCCCGGTTGGAATAATATCAGATGTGTCTACTCCTTCCAATCTGCTG
rJMSF043N11+          CCATNTAATTTTCCCCCGGNTGGAATAATATCAGANGTGTNTACTCCTTCCAATCTGCTG
                      ____________________________________________________________
consensus             CCATCTAATTTTCCCCCGGTTGGAATAATATCAGATGTGTCTACTCCTTCCAATCTGCTG
 
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rJMSF017G11+          CAATTAGTTGCATCTTTGGGATTGGAAATAGGCATAAGTCCTTCAGATATGCCTCTTAGA
rJMSF043N11+          CAATTAGTTGCATCTTTGGGANTGGAAATAGGCATAAGTCCNTCAGATATGCCTCTTAGA
                      ____________________________________________________________
consensus             CAATTAGTTGCATCTTTGGGATTGGAAATAGGCATAAGTCCTTCAGATATGCCTCTTAGA
 
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rJMSF017G11+          ACAACCATTAATTCTCCTGTCTCACTACCCAAAACACTCCTCAATTCGTCCGCTATAAAT
rJMSF043N11+          NCANCCANTAATTCTCCTGTCTCACTACCCAAAACACTCCTCAATTCGTCCGCTATAAAT
                      ____________________________________________________________
consensus             ACAACCATTAATTCTCCTGTCTCACTACCCAAAACACTCCTCAATTCGTCCGCTATAAAT
 
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rJMSF017G11+          CAGGGACAGACCTGTCCAATTTGGGATGGAGAGTTACAAAACCTGTATGCCATGGAGGTT
rJMSF043N11+          CAGGGACAGACCTGTCCAATTTGGGANGGAGAGTTACAAAACCTGTATGCCANGGAGGNT
                      ____________________________________________________________
consensus             CAGGGACAGACCTGTCCAATTTGGGATGGAGAGTTACAAAACCTGTATGCCATGGAGGTT
 
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rJMSF017G11+          CAACAAGGAAGATCACCATCCTTCACTTCACAGCCATTTATGGGTTTTGTAGAAGGCAGT
rJMSF043N11+          CAACANGGAAGATCACCATCCTTCACTTCACAGCCANTTATGGGTTTTGTAGAAGGCAGT
                      ____________________________________________________________
consensus             CAACAAGGAAGATCACCATCCTTCACTTCACAGCCATTTATGGGTTTTGTAGAAGGCAGT
 
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rJMSF017G11+          AATCCAAGGATGGAGATCTGAGCCGGAATTCAGATTCTTGAATCAGTTCTTTCAGAAGTT
rJMSF043N11+          AATCCANGGANGGAGATCTGAGCCGGAATTCAGANTCTTGAATCAGTTCTTTCAGAAGTT
                      ____________________________________________________________
consensus             AATCCAAGGATGGAGATCTGAGCCGGAATTCAGATTCTTGAATCAGTTCTTTCAGAAGTT
 
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rJMSF017G11+          ACCAAATACTAGCTGATTCTTTCTTCCAAGTACATAAACATATATGTCTGTATGTATACA
rJMSF043N11+          ACCAAATACTAGCTGATTCTTTCTTCCAAGTACATAAACATATATGTCTGTATGTATACA
                      ____________________________________________________________
consensus             ACCAAATACTAGCTGATTCTTTCTTCCAAGTACATAAACATATATGTCTGTATGTATACA
 
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rJMSF017G11+          TAAGGTGTACAAATGTCATACTGGCAGTATGCTATCA                       
rJMSF043N11+          TAAGGTGTACAAATGTCATACTGGCAGTATGCTATCANTATTCAACTCTCATATTTTATA
                      ____________________________________________________________
consensus             TAAGGTGTACAAATGTCATACTGGCAGTATGCTATCANTATTCAACTCTCATATTTTATA
 
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rJMSF043N11+          AAAAGAGAAGCTTTTGTATATACANATATATANTATATATATATATCGAACCAAGAAACC
                      ____________________________________________________________
consensus             AAAAGAGAAGCTTTTGTATATACANATATATANTATATATATATATCGAACCAAGAAACC