Contig 012728:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS050H08Sequence204012728 (2)
JMSF042H11Sequence148016853ref|XP_003599272.1|3e-23N-terminal acetyltransferase B complex subunit NAA25 [Medicago truncatula]876012728 (2)ref|XP_009788004.1|2e-59PREDICTED: phagocyte signaling-impaired protein isoform X2 [Nicotiana sylvestri

Alignment

This contig is upended


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JMFS050H08+                                                                   GAGA
rJMSF042H11-                                  TGAATAGTTTACAAGCTGCTAAATTGGGATCTGAGA
                      ____________________________________________________________
consensus                                     TGAATAGTTTACAAGCTGCTAAATTGGGATCTGAGA
 
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JMFS050H08+           GAAAGGGATGGAGGGAGAGAGAGAGGAGACATTATTGTTTATAGTGTACATGGAAGAAAA
rJMSF042H11-          GAAAGGGATGGAGGGAGAGAGAGAGGAGACATTATTGTTTATAGTGTACATGGAAGAAAA
                      ____________________________________________________________
consensus             GAAAGGGATGGAGGGAGAGAGAGAGGAGACATTATTGTTTATAGTGTACATGGAAGAAAA
 
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JMFS050H08+           AATCAAGCCAAAAGAAAATCCAGAAAATGAAATTGCAAAGAAAGAAATGGCTTGAAATAA
rJMSF042H11-          AATCAAGCCAAAAGAAAATCCAGAAAATGAAATTGCAAAGAAAGAAATGGCTTGAAATAA
                      ____________________________________________________________
consensus             AATCAAGCCAAAAGAAAATCCAGAAAATGAAATTGCAAAGAAAGAAATGGCTTGAAATAA
 
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JMFS050H08+           TGAGCCAAAGCAATCTCCTTTTAACATGGGGAAAATTGAAGTACAAAATACCAGGCCGGC
rJMSF042H11-          TGAGCCAAAGCAATCTCCTTTTAACATGGGGAAAATTGAAGTACAAAATACCAGGCCGGC
                      ____________________________________________________________
consensus             TGAGCCAAAGCAATCTCCTTTTAACATGGGGAAAATTGAAGTACAAAATACCAGGCCGGC
 
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JMFS050H08+           GTTGTATTTAGCTCCACCGT                                        
rJMSF042H11-          GTTGTATTTAGCTCCACCGTGTGCCTAATCCATCGTTCATCTCAAACATCAAGCAATTGC
                      ____________________________________________________________
consensus             GTTGTATTTAGCTCCACCGTGTGCCTAATCCATCGTTCATCTCAAACATCAAGCAATTGC
 
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rJMSF042H11-          CTTGGTCGGTAGGCTATAAATGAGCTTTCAGCGCCTGTAGTGATTTTAGTTTTGATTCAC
                      ____________________________________________________________
consensus             CTTGGTCGGTAGGCTATAAATGAGCTTTCAGCGCCTGTAGTGATTTTAGTTTTGATTCAC
 
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rJMSF042H11-          AGATTTTGCTGAAATCGTGTAACGCCAAGACCTGACTAGTCGTGATTTTCCTTACGACAT
                      ____________________________________________________________
consensus             AGATTTTGCTGAAATCGTGTAACGCCAAGACCTGACTAGTCGTGATTTTCCTTACGACAT
 
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rJMSF042H11-          CACCGGGGCTCCAAGACTGCAATGCTTGGGAGATGCGGTCACCCAGCTCCATATCGTTTG
                      ____________________________________________________________
consensus             CACCGGGGCTCCAAGACTGCAATGCTTGGGAGATGCGGTCACCCAGCTCCATATCGTTTG
 
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rJMSF042H11-          TAGAAGACGTTAATTTGTTTATGATTTGAAAGGCCTTCCCGGGCCCTTCACTTTGTCCGT
                      ____________________________________________________________
consensus             TAGAAGACGTTAATTTGTTTATGATTTGAAAGGCCTTCCCGGGCCCTTCACTTTGTCCGT
 
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rJMSF042H11-          GAAGAGAAGAAAGTACGCTTTCCAGTTTTGCATCGTCTGATTTGCTGATTTGTTCCTTTA
                      ____________________________________________________________
consensus             GAAGAGAAGAAAGTACGCTTTCCAGTTTTGCATCGTCTGATTTGCTGATTTGTTCCTTTA
 
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rJMSF042H11-          ACCAGTTCAAAACCTCCTGTATAACGTTGCACACAGATTGGACCGACTCTTGTATTCCTT
                      ____________________________________________________________
consensus             ACCAGTTCAAAACCTCCTGTATAACGTTGCACACAGATTGGACCGACTCTTGTATTCCTT
 
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rJMSF042H11-          GAGAAAGCCGGGCGTTTGACTGCTCCGCGGGTCCGCCTTTCTTTTTTCTCTTTCCGGAAG
                      ____________________________________________________________
consensus             GAGAAAGCCGGGCGTTTGACTGCTCCGCGGGTCCGCCTTTCTTTTTTCTCTTTCCGGAAG
 
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rJMSF042H11-          GAACTACTGCCCGTGCACACGATTGTATTACCAAAGTATGCCAGGCCAAAGGTTCGGTTA
                      ____________________________________________________________
consensus             GAACTACTGCCCGTGCACACGATTGTATTACCAAAGTATGCCAGGCCAAAGGTTCGGTTA
 
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rJMSF042H11-          CCAACTGCACCACGGTGGGAAGATCACTGNCCGGGAGCTGAAGCATCCGGTCCAATTGAT
                      ____________________________________________________________
consensus             CCAACTGCACCACGGTGGGAAGATCACTGNCCGGGAGCTGAAGCATCCGGTCCAATTGAT
 
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rJMSF042H11-          CTTATCTTTTCCTCTATACACTTCTTCAGCAAAGAATTCACAAGTTGCCACATATTCGGT
                      ____________________________________________________________
consensus             CTTATCTTTTCCTCTATACACTTCTTCAGCAAAGAATTCACAAGTTGCCACATATTCGGT