Contig 012726:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-                                      CCAATCCCAAACAAAATGAATGCTGACAATGCA
                      ____________________________________________________________
consensus                                        CCAATCCCAAACAAAATGAATGCTGACAATGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-           AGGTCTGCAGGTTCCAATAAGGAGAGTACACAGCAAGTTAGGGAGTCTGATCAGAGGCCT
                      ____________________________________________________________
consensus             AGGTCTGCAGGTTCCAATAAGGAGAGTACACAGCAAGTTAGGGAGTCTGATCAGAGGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-           AATTGGCCTAACAGGAAAGCCCAAGATGGCAAAGAAGAACATGAGAAGCCTAAATCCAAT
rJMSF048P08+                                                                    AT
                      ____________________________________________________________
consensus             AATTGGCCTAACAGGAAAGCCCAAGATGGCAAAGAAGAACATGAGAAGCCTAAATCCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-           GATGGAGGGCACATCAAGAAAGGCAATGAAGAGGAGTTTCATGGTTTGGCTAATCCAAAG
rJMSF012M21+                               GGCAATGAAGAGGAGTTTCATGGTTTGGCTTATCCAAAG
rJMSF048P08+          GATGGAGGGCACATCCAGAAAGGCAATGAAGAGGAGTTTCATGGTTTGGCTAATCCAAAG
                      ____________________________________________________________
consensus             GATGGAGGGCACATCCAGAAAGGCAATGAAGAGGAGTTTCATGGTTTGGCTAATCCAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-           AGTGCACCAGTTGAGGCCACAACACGTATAACCTCGACTCAAGAGGATTCCTCCAAGAAA
rJMSF012M21+          AGTGCACCAGTTGAGGCCACAACACGTATAACCTCGACTCAAGAGGATTCCTCCAAGAAA
rJMSF048P08+          AGTGCACCAGTTGAGGCCACAACACGTATAACCTCGACTCAAGAGGATTCCTCCAAGAAA
rJMFF013P06+                           CACAACACGTATAACCTCGACTCAAGAGGATTCCTCCAAGAAA
                      ____________________________________________________________
consensus             AGTGCACCAGTTGAGGCCACAACACGTATAACCTCGACTCAAGAGGATTCCTCCAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-           CCAAGCAAGAATCAGCATGATAATCTCGACGATGGCAACTCCAAGAAGAGTAGCAGCATA
rJMSF012M21+          CCAAGCAAGAATCAGCATGATAATCTCGACGATGGCAACTCCAAGAAGAGTAGCAGCATA
rJMSF048P08+          CCAAGCAAGAATCAGCATGATAATCTCGACGATGGCAACTCCAAGAAGAGTAGCAGCATA
rJMFF013P06+          CCAAGCAAGAATCAGCATGATAATCTCGACGATGGCAACTCCAAGAAGAGTAGCAGCATA
                      ____________________________________________________________
consensus             CCAAGCAAGAATCAGCATGATAATCTCGACGATGGCAACTCCAAGAAGAGTAGCAGCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-           ACACCAATCTCATACACCAAAGGTGCTGGCAACACCAAGGCTGCAGATTTCAACGGAAGA
rJMSF012M21+          ACACCAATCTCATACACCAAAGGTGCTGGCAACACCAAGGCTGCAGATTTCAACGGAAGA
rJMSF048P08+          ACACCAATCTCATACACCAAAGGTGCTGGCAACACCAAGGCTGCAGATTTCAACGGAAGA
rJMFF013P06+          ACACCAATCTCATACACCAAAGGTGCTGGCAACACCAAGGCTGCAGATTTCAACGGAAGA
rJMSF031H03+                                                          TTCAACGGAAGA
                      ____________________________________________________________
consensus             ACACCAATCTCATACACCAAAGGTGCTGGCAACACCAAGGCTGCAGATTTCAACGGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-           TGGTACAAACAGCCCGGTTCCACTCTCACCAGCGCCACGAGCAACGTGGACGATCTGATG
rJMSF012M21+          TGGTACAAACAGCCCGGTTCCACTCTCACCAGCGCCACGAGCAACGTGGACGATCTGATG
rJMSF048P08+          TGGTACAAACAGCCCGGTTCCACTCTCACCAGCGCCACGAGCAACGTGGACGATCTGATG
rJMFF013P06+          TGGTACAAACAGCCCGGTTCCACTCTCACCAGCGCCACGAGCAACGTGGACGATCTGATG
rJMSF031H03+          TGGTACAAACAGCCCGGTTCCACTCTCACCAGCGCCACGAGCAACGTGGACGATCTGATG
                      ____________________________________________________________
consensus             TGGTACAAACAGCCCGGTTCCACTCTCACCAGCGCCACGAGCAACGTGGACGATCTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-           AAAGTCATCGAGGAAGCTAAAAGAACAGGGGCATATCCTACTGCATCAGAGAAGCCACAC
rJMSF012M21+          AAAGTCATCGAGGAAGCTAAAAGAACAGGGGCATATCCTACTGCATCAGAGAAGCCACAC
rJMSF048P08+          AAAGTCATCGAGGAAGCTAAAAGAACAGGGGCATATCCTACTGCATCAGAGAAGCCACAC
rJMFF013P06+          AAAGTCATCGAGGAAGCTAAAAGAACAGGGGCATATCCTACTGCATCAGAGAAGCCACAC
rJMSF028P19+                                                           AGAAGCCACAC
JMSF028P19-                                                            AGAAGCCACAC
rJMSF031H03+          AAAGTCATCGAGGAAGCTAAAAGAACAGGGGCATATCCTACTGCATCAGAGAAGCCACAC
rJMSF042B18+                            AAAAGAACAGGGGCATATCCTACTGCATCAGAGAAGCCTCAC
                      ____________________________________________________________
consensus             AAAGTCATCGAGGAAGCTAAAAGAACAGGGGCATATCCTACTGCATCAGAGAAGCCACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-           TGGAGTGAAATCACCCCGATTCCTCCCCAAGGAGTGCGCGTTAGCGGCCCACAATGGAAC
rJMSF012M21+          TGGAGTGAAATCACCCCGATTCCTCCCCAAGGAGTGCGCGTTAGCGGCCCACAATGGAAC
rJMSF048P08+          TGGAGTGAAATCACCCCGATTCCTCCCCAAGGAGTGCGCGTTAGCGGCCCACAATGGAAC
rJMFF013P06+          TGGAGTGAAATCACCCCGATTCCTCCCCAAGGAGTGCGCGTTAGCGGCCCACAATGGAAC
rJMSF028P19+          TGGAGTGAAATCACCCCGATTCCTCCCCAAGGAGTGCGCGTTAGCGGCCCACAATGGAAC
JMSF028P19-           TGGAGTGAAATCACCCCGATTCCTCCCCAAGGAGTGCGCGTTAGCGGCCCACAATGGAAC
rJMSF031H03+          TGGAGTGAAATCACCCCGATTCCTCCCCAAGGAGTGCGCGTTAGCGGCCCACAATGGAAC
rJMSF042B18+          TGGAGTGAAATCACCCCGATTCCTCCCCAAGGAGTGCGCGTTAGCGGCCCACAATGGAAC
                      ____________________________________________________________
consensus             TGGAGTGAAATCACCCCGATTCCTCCCCAAGGAGTGCGCGTTAGCGGCCCACAATGGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS009B06-           GAAATCACTCCAAATCCTCCAGTAATTGACAGT                           
rJMSF012M21+          GAAATCACTCCAAATCCTCCAGTAATTGACAGTATGGAAGCAAGGAGGCGATATACTACT
rJMSF048P08+          GAAATCACTCCAAATCCTCCAGTAATTGACAGTATGGAAGCAAGGAGGCGATATACTACT
rJMFF013P06+          GAAATCACTCCAAATCCTCCAGTAATTGACAGTATGGAAGCAAGGAGGCGATATACTACT
rJMSF028P19+          GAAATCACTCCAAATCCTCCAGTAATTGACAGTATGGAAGCAAGGAGGCGATATACTACT
JMSF028P19-           GAAATCACTCCAAATCCTCCAGTAATTGACAGTATGGAAGCAAGGAGGCGATATACTACT
rJMSF031H03+          GAAATCACTCCAAATCCTCCAGTAATTGACAGTATGGAAGCAAGGAGGCGATATACTACT
rJMSF042B18+          GAAATCACTCCAAATCCTCCAGTAATTGACAGTATGGAAGCAAGGAGGCGATATACTACT
                      ____________________________________________________________
consensus             GAAATCACTCCAAATCCTCCAGTAATTGACAGTATGGAAGCAAGGAGGCGATATACTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012M21+          GGGTATCCACAGCCAGTTGCAGCAGCACCTATGGGTATGGGATTTTATGGAGGAGCTCTT
rJMSF048P08+          GGGTATCCACAGCCAGTTGCAGCAGCACCTATGGGTATGGGATTTTATGGAGGAGCTCTT
rJMFF013P06+          GGGTATCCACAGCCAGTTGCAGCAGCACCTATGGGTATGGGATTTTATGGAGGAGCTCTT
rJMSF028P19+          GGGTATCCACAGCCAGTTGCAGCAGCACCTATGGGTATGGGATTTTATGGAGGAGCTCTT
JMSF028P19-           GGGTATCCACAGCCAGTTGCAGCAGCACCTATGGGTATGGGATTTTATGGAGGAGCTCTT
rJMSF031H03+          GGGTATCCACAGCCAGTTGCAGCAGCACCTATGGGTATGGGATTTTATGGAGGAGCTCTT
rJMSF042B18+          GGGTATCCACAGCCAGTTGCAGCAGCACCTATGGGTATGGGATTTTATGGAGGAGCTCTT
                      ____________________________________________________________
consensus             GGGTATCCACAGCCAGTTGCAGCAGCACCTATGGGTATGGGATTTTATGGAGGAGCTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012M21+          AATAGTGAAGATGCTGTGAGGATATATGGTGGCACCTTCCTACCTAACTAATCAGGAAAA
rJMSF048P08+          AATAGTGAAGATGCTGTGAGGATATATGGTGGCACCTTCCTACCTAACTAATCAGGAAAA
rJMFF013P06+          AATAGTGAAGATGCTGTGAGGATATATGGTGGCACCTTCCTACCTAACTAATCAGGAAAA
rJMSF028P19+          AATAGTGAAGATGCTGTGAGGATATATGGTGGCACCTTCCTACCTAACTAATCAGGAAAA
JMSF028P19-           AATAGTGAAGATGCTGTGAGGATATATGGTGGCACCTTCCTACCTAACTAATCAGGAAAA
rJMSF031H03+          AATAGTGAAGATGCTGTGAGGATATATGGTGGCACCTTCCTACCTAACTAATCAGGAAAA
rJMSF042B18+          AATAGTGAAGATGCTGTGAGGATATATGGTGGCACCTTCCTACCTAACTAATCAGGAAAA
                      ____________________________________________________________
consensus             AATAGTGAAGATGCTGTGAGGATATATGGTGGCACCTTCCTACCTAACTAATCAGGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012M21+          CTTGCCCACATCCAATTGCTGGCAACTGTGGCTGTGTTATCTCACTTATCTGCATATAGT
rJMSF048P08+          CTTGCCCACATCCAATTGCTGGCAACTGTGGCTGTGTTATCTCACTTATCTGCATATAGT
rJMFF013P06+          CTTGCCCACATCCAATTGCTGGCAACTGTGGCTGTGTTATCTCACTTATCTGCATATAGT
rJMSF028P19+          CTTGCCCACATCCAATTGCTGGCAACTGTGGCTGTGTTATCTCACTTATCTGCATATAGT
JMSF028P19-           CTTGCCCACATCCAATTGCTGGCAACTGTGGCTGTGTTATCTCACTTATCTGCATATAGT
rJMSF031H03+          CTTGCCCACATCCAATTGCTGGCAACTGTGGCTGTGTTATCTCACTTATCTGCATATAGT
rJMSF042B18+          CTTGCCCACATCCAATTGCTGGCAACTGTGGCTGTGTTATCTCACTTATCTGCATATAGT
                      ____________________________________________________________
consensus             CTTGCCCACATCCAATTGCTGGCAACTGTGGCTGTGTTATCTCACTTATCTGCATATAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012M21+          TTCTAGCTACCAATATGACACTAGTTGCATATGAAAATTAAACCAAAAAGTGTGTGTTTA
rJMSF048P08+          TTCTAGCTACCAATATGACACTAGTTGCATATGAAAATTAAACCAAAAAGTGTGTGTTTA
rJMFF013P06+          TTCTAGCTACCAATATGACACTAGTTGCATATGAAAATTAAACCAAAAAGTGTGTGTTTA
rJMSF028P19+          TTCTAGCTACCAATATGACACTAGTTGCATATGAAAATTAAACCAAAAAGTGTGTGTTTA
JMSF028P19-           TTCTAGCTACCAATATGACACTAGTTGCATATGAAAATTAAACCAAAAAGTGTGTGTTTA
rJMSF031H03+          TTCTAGCTACCAATATGACACTAGTTGCATATGAAAATTAAACCAAAAAGTGTGTGTTTA
rJMSF042B18+          TTCTAGCTACCAATATGACACTAGTTGCATATGAAAATTAAACCAAAAAGTGTGTGTTTA
                      ____________________________________________________________
consensus             TTCTAGCTACCAATATGACACTAGTTGCATATGAAAATTAAACCAAAAAGTGTGTGTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012M21+          ATCTGTGCTAAGATGTTTTACTGTTTGAGTACTTGATCAAATA                 
rJMSF048P08+          ATCTGTGCTAAGATGTTTTACTGTTTGAGTACTTGATCAAATACT               
rJMFF013P06+          ATCTGTGCTAAGATGTTTTACTGTTTGAGTACTTGATCAAATACTGTGTGATGCTTGAAT
rJMSF028P19+          ATCTGTGCTAAGATGTTTTACTGTTTGAGTACTTGATCAAATACTGTGTGATGCTTGAAT
JMSF028P19-           ATCTGTGCTAAGATGTTTTACTGTTTGAGTACTTGATCAAATACTGTGTGATGCTTGAAT
rJMSF031H03+          ATCTGTGCTAAGATGTTTTACTGTTTGAGTACTTGATCAAATACTGTGTGATGCTTGAAT
rJMSF042B18+          ATCTGTGCTAAGATGTTTTACTGTTTGAGTACTTGATCAAATACTGTGTGATGCTTGGAT
                      ____________________________________________________________
consensus             ATCTGTGCTAAGATGTTTTACTGTTTGAGTACTTGATCAAATACTGTGTGATGCTTGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013P06+          AAATGTAATGTATT                                              
rJMSF028P19+          AAATGTAA                                                    
JMSF028P19-           AAATGTAATGTATTTGTTCTCTCAGGGATATAACCATAGAAAATTGTGTA          
rJMSF031H03+          AAATGTAATGTATTTGTTCTCTCAGGGATATAACCATAGAAAATTGTGTATCCCATGTTC
rJMSF042B18+          AAATGTAATGTATTTGTTCTCTCAGGGATATAACCATAGAAAATTGTGTATCCCATGTTC
                      ____________________________________________________________
consensus             AAATGTAATGTATTTGTTCTCTCAGGGATATAACCATAGAAAATTGTGTATCCCATGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031H03+          GTGGTCAGGCCGGTCAATAGGGGTTAAAAACCTA-CAAACGCCGTCTGTGGGGATCGAAC
rJMSF042B18+          GTGGTCAGGCCGGTCAATAGGGGTTAAAAACCTATCAAACGCCGTCTGTGGGGATCGAAC
                      ____________________________________________________________
consensus             GTGGTCAGGCCGGTCAATAGGGGTTAAAAACCTATCAAACGCCGTCTGTGGGGATCGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031H03+          CCACGACCA-CGTGGTTAAAAGCCACGCGCTCTACCACTGAGCTAAGA            
rJMSF042B18+          CCACGACCANCGTGGTTAAAAGCCACGCGCTCTACCACTGAGCTAAGAACGGCTGATGAC
                      ____________________________________________________________
consensus             CCACGACCANCGTGGTTAAAAGCCACGCGCTCTACCACTGAGCTAAGAACGGCTGATGAC