Contig 012725:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001B03Sequence273000585 (8)ref|XP_009783535.1|1e-20PREDICTED: TBC1 domain family member 2B-like [Nicotiana sylvestris]803012725 (3)ref|XP_002281489.1|2e-81PREDICTED: TBC1 domain family member 8B [Vitis vinifera] emb|CBI25326.3| unnamed
JMSF005O04Sequence281000585 (8)ref|XP_009604107.1|4e-13PREDICTED: ecotropic viral integration site 5 ortholog-like [Nicotiana tomentos353012725 (3)
JMSF041O12Sequence646000585 (8)ref|XP_009783535.1|2e-47PREDICTED: TBC1 domain family member 2B-like [Nicotiana sylvestris]711012725 (3)ref|XP_002281489.1|6e-39PREDICTED: TBC1 domain family member 8B [Vitis vinifera] emb|CBI25326.3| unnamed

Alignment

This contig is upended


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rJMSF001B03+                                                     AGAGACAGCNCTNATGG
                      ____________________________________________________________
consensus                                                        AGAGACAGCNCTNATGG
 
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rJMSF001B03+          AGATGTCAAGCAGGATAACCGGCGACAATTGAGTGCAAAGGTTGAGCAATTAGAGCAAGA
                      ____________________________________________________________
consensus             AGATGTCAAGCAGGATAACCGGCGACAATTGAGTGCAAAGGTTGAGCAATTAGAGCAAGA
 
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rJMSF001B03+          CATTGCAGAGCTCAGGCAGGCTCTTGCTGATAAACAAGAACAAGAGAATGCCATGCTTCA
                      ____________________________________________________________
consensus             CATTGCAGAGCTCAGGCAGGCTCTTGCTGATAAACAAGAACAAGAGAATGCCATGCTTCA
 
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rJMSF001B03+          GGTTTTGATGCGAGTAGAGCAAGAACAAA-GGGTAACTGAAGATGCTCGCAGATTTGCTG
rJMSF041O12+                   GCGAGTAGAGCAAGAACAAAGGGGTAACTGAAGATGCTCGCAGATTTGCTG
                      ____________________________________________________________
consensus             GGTTTTGATGCGAGTAGAGCAAGAACAAAGGGGTAACTGAAGATGCTCGCAGATTTGCTG
 
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rJMSF001B03+          AACAAGATGCAGCTGCTCAAAGATATGCTACACAAGTGCTTCAGGAAAAGTATGAAGCTG
rJMSF041O12+          ANCAAGATGCAGCTGCTCAAAGATATGCTACACAAGTGCTTCAGGAAAAGTATGAAGCTG
                      ____________________________________________________________
consensus             AACAAGATGCAGCTGCTCAAAGATATGCTACACAAGTGCTTCAGGAAAAGTATGAAGCTG
 
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rJMSF001B03+          CTATGGCTTCCCTCTCAGAGATGGAAAGAAGGGTGGTTATGGCTGAATCAATGTTGGAAG
rJMSF041O12+          CTATGGCTTCCCTCTCAGAGATGGAAAGAAGGGTGGTTATGGCTGAATCAATGTTGGAAG
                      ____________________________________________________________
consensus             CTATGGCTTCCCTCTCAGAGATGGAAAGAAGGGTGGTTATGGCTGAATCAATGTTGGAAG
 
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rJMSF001B03+          CAACCTTGCAGTACCAATCTGGTCAAAACAAAACACAACCATCCCCACGATCTGCACAGC
rJMSF041O12+          CAACCTTGCAGTACCAATCTGGTCAAAACAAAACACAACCATCCCCACGATCTGCACAGC
                      ____________________________________________________________
consensus             CAACCTTGCAGTACCAATCTGGTCAAAACAAAACACAACCATCCCCACGATCTGCACAGC
 
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rJMSF001B03+          AAGATTCTTCCCACGGGCAATCTAATCAAGATTCCCCACAAGAGATACCAACAAGAAAAA
rJMSF041O12+          AAGATTCTTCCCACGGGCAATCTAATCAAGATTCCCCACAAGAGATACCAACAAGAAAAA
                      ____________________________________________________________
consensus             AAGATTCTTCCCACGGGCAATCTAATCAAGATTCCCCACAAGAGATACCAACAAGAAAAA
 
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rJMSF001B03+          TCAGCCTGCTATCTAGATGGCGGGACAGGAATAAGGGGAAGCCGAGCTCAGAGGAGGCTG
rJMSF041O12+          TCAGCCTGCTATCTAGATGGCGGGACAGGAATAAGGGGAAGCCGAGCTCAGAGGAGGCTG
                      ____________________________________________________________
consensus             TCAGCCTGCTATCTAGATGGCGGGACAGGAATAAGGGGAAGCCGAGCTCAGAGGAGGCTG
 
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rJMSF001B03+          GTGAAGATAAGCCCGTGAATGAGGTTCAAAGTCCAAGTAAAGAACAGCAGGAGACGAATG
rJMSF005O04+            GAAGATAAGCCCGNGAATGAGGTTCAAAGTCCANGTAAAGAACAGCAGGAGACGAATG
rJMSF041O12+          GTGAAGATAAGCCCGTGAATGAGGTTCAAAGTCCAAGTAAAGAACAGCAGGAGACGAATG
                      ____________________________________________________________
consensus             GTGAAGATAAGCCCGTGAATGAGGTTCAAAGTCCAAGTAAAGAACAGCAGGAGACGAATG
 
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rJMSF001B03+          GCCATCCTGTGGAAGAGAAAGCGTAAGAGTAAGAGTTGGTCCTTCGTCAAATGAGATATC
rJMSF005O04+          NCCATCCTGTGGAAGAGAANGCGTAAGAGTAAGAGTTGGTCCTTCGTCAAATGAGATATC
rJMSF041O12+          GCCATCCTGTGGAAGAGAAAGCGTAAGAGTAAGAGTTGGTCCTTCGTCAAATGAGATATC
                      ____________________________________________________________
consensus             GCCATCCTGTGGAAGAGAAAGCGTAAGAGTAAGAGTTGGTCCTTCGTCAAATGAGATATC
 
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rJMSF001B03+          CTCGAAACTCAAAATTGATTCTCAGCAGTCTTCCCCTCGTTCCCCGCTTGCTATAAATCA
rJMSF005O04+          CTCGAAACTCAAAATTGATTCTCAGCAGTCTTCCCCTCGTTCCCCGCTTGCTATAAATCA
rJMSF041O12+          CTCGAAACTCAAAATTGATTCTCAGCAGTCTTCCCCTCGTTCCCCGCTTGCTATAAATCA
                      ____________________________________________________________
consensus             CTCGAAACTCAAAATTGATTCTCAGCAGTCTTCCCCTCGTTCCCCGCTTGCTATAAATCA
 
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rJMSF001B03+          AAAATCAATTTGTTTGTTCGTTCTATAGTGGTGAGTAATAGTTGGAGAGAGGATACACAT
rJMSF005O04+          AAAATCAATTTGTTTGTTCGTTCTATAGTGGTGAGTAATAGTTGGAGAGAGGATACACAT
rJMSF041O12+          AAAATCAATTTGTTTGTTCGTTCTATAGTGGTGAGTAATAGTTGGAGAGAGGATACACAT
                      ____________________________________________________________
consensus             AAAATCAATTTGTTTGTTCGTTCTATAGTGGTGAGTAATAGTTGGAGAGAGGATACACAT
 
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rJMSF001B03+          ATATAATATATAATATATGGCATAGTATAAAATGGACAAATGAATAGGTACTGTTTGGTT
rJMSF005O04+          ATATAATATATAATATANGGCATAGTATAAAATGGNCAAATGAATAGGTACTGTTTGGTT
rJMSF041O12+          ATATAATATATAATATATGGCATAGTATAAAATGGACAAATGAATAGGTACTGTTTGGTT
                      ____________________________________________________________
consensus             ATATAATATATAATATATGGCATAGTATAAAATGGACAAATGAATAGGTACTGTTTGGTT
 
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rJMSF001B03+          ACGCAAT                                                     
rJMSF005O04+          ACGCAATTGTATAAGCATNGGTTTAATNGTAATTCTT                       
rJMSF041O12+          ACGCAATTGTATAAGCATTGGTTTAATTGTAATTCTTTTTCCCAGAATGTATAATTCTTG
                      ____________________________________________________________
consensus             ACGCAATTGTATAAGCATTGGTTTAATTGTAATTCTTTTTCCCAGAATGTATAATTCTTG