| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF018J02 | Sequence | 504 | 012719 (6) | ref|XP_009608577.1| | 2e-39 | PREDICTED: Werner Syndrome-like exonuclease isoform X2 [Nicotiana tomentosiform | 745 | 012719 (6) | ref|XP_006360927.1| | 6e-17 | PREDICTED: Werner Syndrome-like exonuclease-like [Solanum tuberosum] |
| JMSF036D02 | Sequence | 693 | 012719 (6) | ref|XP_009608576.1| | 6e-57 | PREDICTED: Werner Syndrome-like exonuclease isoform X1 [Nicotiana tomentosiform | 714 | 012719 (6) | emb|CDP11180.1| | 4e-62 | unnamed protein product [Coffea canephora] |
| JMSF040K02 | Sequence | 671 | 012719 (6) | ref|XP_009608577.1| | 2e-74 | PREDICTED: Werner Syndrome-like exonuclease isoform X2 [Nicotiana tomentosiform | 753 | 012719 (6) | emb|CDP11180.1| | 7e-36 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF040K02- GCGC
JMSF036D02- GGGAGAGGCCAACTAGGCGCGC
____________________________________________________________
consensus GGGAGAGGCCAACTAGGCGCGC
. : . : . : . : . : . :
JMSF040K02- ACCACTGAACTGAATCTCCGCCTCTCCGGGAAGAAATGGAAACATCAGTCCCTTCATCGA
JMSF036D02- ACCACTGAACTGAATCTCCGCCTCTCCGGGAAGAAATGGAAACATCAGTCCCTTCATCGA
____________________________________________________________
consensus ACCACTGAACTGAATCTCCGCCTCTCCGGGAAGAAATGGAAACATCAGTCCCTTCATCGA
. : . : . : . : . : . :
JMSF018J02- ACTGGGATCGTCCTTTCACTGATCTAGAGCTCCTAGAAATCGAAG
JMSF040K02- TGGCCGGTTTAGACGACTGGGATCGTCCTTTCACTGATCTAGAGCTCCTAGAAATCGAAG
JMSF036D02- TGGCCGGTTTAGACGACTGGGATCGTCCTTTCACTGATCTAGAGCTCCTAGAAATCGAAG
____________________________________________________________
consensus TGGCCGGTTTAGACGACTGGGATCGTCCTTTCACTGATCTAGAGCTCCTAGAAATCGAAG
. : . : . : . : . : . :
JMSF018J02- CAGCTTTTCAATCTGCCACCAACAAGCGCAAAGATTCCGATAAGTCCTCCGCTCCCGCTG
JMSF040K02- CAGCTTTTCAATCTGCCACCAACAAGCGCAAAGATTCCGATAAGTCCTCCGCTCCCGCTG
JMSF036D02- CAGCTTTTCAATCTGCCACCAACAAGCGCAAAGATTCCGATAAGTCCTCCGCTCCCGCTG
____________________________________________________________
consensus CAGCTTTTCAATCTGCCACCAACAAGCGCAAAGATTCCGATAAGTCCTCCGCTCCCGCTG
. : . : . : . : . : . :
JMSF018J02- CCGAAGATGAGGTTAACGGCGATGTAAATAAATTTCGCCGGAACCATCGCCGGAGACTGC
JMSF040K02- CCGAAGATGAGGTTAACGGCGATGTAAATAAATTTCGCCGGAACCATCGCCGGAGACTGC
JMSF036D02- CCGAAGATGAGGTTAACGGCGATGTAAATAAATTTCGCCGGAACCATCGCCGGAGACTGC
____________________________________________________________
consensus CCGAAGATGAGGTTAACGGCGATGTAAATAAATTTCGCCGGAACCATCGCCGGAGACTGC
. : . : . : . : . : . :
JMSF018J02- CTGCATCACTCTTCTCCACTTCTTTTTCCCTGTCCCCATGCCCTAGAAGTCGATTTAAGC
JMSF040K02- CTGCATCACTCTTCTCCACTTCTTTTTCCCTGTCCCCATGCCCTAGAAGTCGATTTAAGC
JMSF036D02- CTGCATCACTCTTCTCCACTTCTTTTTCCCTGTCCCCATGCCCTA-AAGTCGATTTAAGC
____________________________________________________________
consensus CTGCATCACTCTTCTCCACTTCTTTTTCCCTGTCCCCATGCCCTAGAAGTCGATTTAAGC
. : . : . : . : . : . :
JMSF018J02- ATCAATTGAATAGGTTCCCAGCACTAGCATTCAGGGGGCGTATTGTATATAGCAGAACTG
JMSF040K02- ATCAATTGAATAGGTTCCCAGCACTAGCATTCAGGGGGCGTATTGTATATAGCAGAACTG
JMSF036D02- ATCAATTGAATAGGTTCCCAGCACTAGCATTCAGGGGGCGTATTGTATATAGCAGAACTG
____________________________________________________________
consensus ATCAATTGAATAGGTTCCCAGCACTAGCATTCAGGGGGCGTATTGTATATAGCAGAACTG
. : . : . : . : . : . :
JMSF018J02- CAGTTGAGGCCGAGAGATCTGCAGCAGAGCTTTTAAATTTTATTGAAACGAGGAAGAGAG
JMSF040K02- CAGTTGAGGCCGAGAGATCTGCAGCAGAGCTTTTAAATTTTATTGAAACGAGGAAGAGAG
JMSF036D02- CAGTTGAGGCCGAGAGATCTGCAGCAGAGCTTTTAAATTTTATTGAAACGAGGAAGAGAG
____________________________________________________________
consensus CAGTTGAGGCCGAGAGATCTGCAGCAGAGCTTTTAAATTTTATTGAAACGAGGAAGAGAG
. : . : . : . : . : . :
JMSF018J02- CAGAAGGTGTAGTTGCTCTGGGATTTGACATTGAATGGAAACCCACTTTCAAAAGAGGTG
JMSF040K02- CAGAAGGTGTAGTTGCTCTGGGATTTGACATTGAATGGAAACCCACTTTCAAAAGAGGTG
JMSF036D02- CAGAAGGTGTAGTTGCTCTGGGATTTGACATTGAATGGAAACCCACTTTCAAAAGAGGTG
____________________________________________________________
consensus CAGAAGGTGTAGTTGCTCTGGGATTTGACATTGAATGGAAACCCACTTTCAAAAGAGGTG
. : . : . : . : . : . :
JMSF018J02- TTGCCCCCTGGGAAAGCGGCTGTTATGCAGATATGTGGGGAGATGAACCGTTGTTATGTC
JMSF040K02- TTG-CCCCTGGGAAAGCGGCTGTTATGCAGATATGTGGGGAGATGAACCGTTGTTATGTC
JMSF036D02- TTG-CCCCTGGGAAAGCGGCTGTTATGCAGATATGTGGGGAGATGAACCGTTGTTATGTC
rJMSF036D02+ TTATGCAGATATGTGGGGAGATGAACCGTTGTTATGTC
____________________________________________________________
consensus TTG-CCCCTGGGAAAGCGGCTGTTATGCAGATATGTGGGGAGATGAACCGTTGTTATGTC
. : . : . : . : . : . :
JMSF018J02- TTCCACATATTCCATTCTGGAATCCCTCAAAATCTGCAG
JMSF040K02- TTCCACATATTCCATTCTGGAATCCCTCAAAATCTGCAGACACTTCTAGGGAATTCTGCT
JMSF036D02- TTCCACATATTCCATTCTGGAATCCCTCAAAATCTGCAGACACTTCTAGGGAATTCTGCT
rJMSF036D02+ TTCCACATATTCCATTCTGGAATCCCTCAAAATCTGCAGACACTTCTAGGGAATTCTGCT
____________________________________________________________
consensus TTCCACATATTCCATTCTGGAATCCCTCAAAATCTGCAGACACTTCTAGGGAATTCTGCT
. : . : . : . : . : . :
JMSF040K02- ACTGTGAAGGTGGGAGTAAGCATCGCGGGTGATGCTCATAAGGNTTTTCTAGATCATAAT
JMSF036D02- ACTGTGAAGGTGGGAGTAAGCATCGCGGGTGATGCTCATAAGGNTTTTCTAGATCATAAT
rJMSF036D02+ ACTGTGAAGGTGGGAGTAAGCATCGCGGGTGATGCTCATAAGGTTTTTCTAGATCATAAT
____________________________________________________________
consensus ACTGTGAAGGTGGGAGTAAGCATCGCGGGTGATGCTCATAAGGTTTTTCTAGATCATAAT
. : . : . : . : . : . :
JMSF040K02- GTACCTG
JMSF036D02- GTACCTG
rJMSF036D02+ GTACCTGTTAGAAATGTGGATGATCTATCTGCGCTAGCCAATCTAAAGATTGGTGGAGTT
____________________________________________________________
consensus GTACCTGTTAGAAATGTGGATGATCTATCTGCGCTAGCCAATCTAAAGATTGGTGGAGTT
. : . : . : . : . : . :
rJMSF036D02+ CCCAAAAATTGGAGTCTAGCATCATTGACAGAAACACTCCTTTGCAAACAGCTCCCTAAG
rJMSF018J02+ AGCTCCCTAAG
rJMSF040K02+ AGCTCCCTAAG
____________________________________________________________
consensus CCCAAAAATTGGAGTCTAGCATCATTGACAGAAACACTCCTTTGCAAACAGCTCCCTAAG
. : . : . : . : . : . :
rJMSF036D02+ CCAAACCATATAAGATTGGGAAATTGGGAGACTCCAGTTTTATCAAAAGAACACCTAAAT
rJMSF018J02+ CCAAACCATATAAGATTGGGAAATTGGGAGACTCCAGTTTTATCAAAAGAACACCTAAAT
rJMSF040K02+ CCAAACCATATAAGATTGGGAAATTGGGAGACTCCAGTTTTATCAAAAGAACACCTNAAT
____________________________________________________________
consensus CCAAACCATATAAGATTGGGAAATTGGGAGACTCCAGTTTTATCAAAAGAACACCTAAAT
. : . : . : . : . : . :
rJMSF036D02+ TATGCTGCCACAGATGCTTTTGTTTCATGGCACCTATATCAGGCGTTGAAGAGCCTTCCT
rJMSF018J02+ TATGCTGCCACAGATGCTTTTGTTTCATGGCACCTATATCAGGCGTTGAAGAGCCTTCCT
rJMSF040K02+ TATGCTGCCACAGATGCTTTTGTTTCANGGCACCTATATCAGGCGTTGAAGAGCCTTCCT
____________________________________________________________
consensus TATGCTGCCACAGATGCTTTTGTTTCATGGCACCTATATCAGGCGTTGAAGAGCCTTCCT
. : . : . : . : . : . :
rJMSF036D02+ GAGGCTGTTGATAATAAGAGCAACGAACCAGAGCATGTGAGCAGTGAGTGAGATGTGATT
rJMSF018J02+ GAGGCTGTTGATAATAAGAGCAACGAACCAGAGCATGTGAGCAGTGAGTGAGATGTGATT
rJMSF040K02+ GAGGCTGTNGATAATAAGAGCAACGAACCAGAGCANGTGAGCAGTGAGTGAGANGTGATT
____________________________________________________________
consensus GAGGCTGTTGATAATAAGAGCAACGAACCAGAGCATGTGAGCAGTGAGTGAGATGTGATT
. : . : . : . : . : . :
rJMSF036D02+ GTCAACTATTGTTTGAATAGTAGTGGCGGCTGTAACATCAGTTACATCTGGACTATTAAA
rJMSF018J02+ GTCAACTATTGTTTGAATAGTAGTGGCGGCTGTAACATCAGTTACATCTGGACTATTAAA
rJMSF040K02+ GTCAACTATTGTTTGAATTGTAGTGGCGGCTGTAACATCAGTTACATCTGGANTATTAAA
____________________________________________________________
consensus GTCAACTATTGTTTGAATAGTAGTGGCGGCTGTAACATCAGTTACATCTGGACTATTAAA
. : . : . : . : . : . :
rJMSF036D02+ TTTCGCGCTTATCTGGTCCAGTCCAAGTGTCCAACCATCTTGCTTGATGCTGTTATATAT
rJMSF018J02+ TTTCGCGCTTATCTGGTCCAGTCCAAGTGTCCAACCATCTTGCTTGATGCTGTTATATAT
rJMSF040K02+ TTTCGCGCTNATCTGGTCCAGTCCAAGTGTCCAACCATCTTGCTTGATGCTGTTATATAT
____________________________________________________________
consensus TTTCGCGCTTATCTGGTCCAGTCCAAGTGTCCAACCATCTTGCTTGATGCTGTTATATAT
. : . : . : . : . : . :
rJMSF036D02+ CCATTTGCTCTAGCCAAACCTTTTCTTATCCAGAGGCACAAGTCACTGCTAATGAGGTAC
rJMSF018J02+ CCATTTGCTCTAGCCAAACCTTTTCTTATCCAGAGGCACAAGTCACTGCTAATGAGGTAC
rJMSF040K02+ CCATTNGCTCTAGCCAAACCTTTTCTTATCCAGAGGCACAAGTCACTGCTANTGAGGTAC
____________________________________________________________
consensus CCATTTGCTCTAGCCAAACCTTTTCTTATCCAGAGGCACAAGTCACTGCTAATGAGGTAC
. : . : . : . : . : . :
rJMSF036D02+ TTTTAGCTAGTGCAGTGCATCCTGAACCTTATTGGAGGAGTGTTATCAGCTTCTCAGTCT
rJMSF018J02+ TTTTAGCTAGTGCAGTGCATCCTGAACCTTATTGGAGGAGTGTTATCAGCTTCTCAGTCT
rJMSF040K02+ TTTTAGCTAGNGCAGNGCATCCTGAACCTTATTGGAGGAGTGTTATCAGCTTCTCAGTCN
____________________________________________________________
consensus TTTTAGCTAGTGCAGTGCATCCTGAACCTTATTGGAGGAGTGTTATCAGCTTCTCAGTCT
. : . : . : . : . : . :
rJMSF036D02+ GGATCATATTACTGAA
rJMSF018J02+ GGATCATATTACTGAATTAGTTCATAGCTATTCGTTTGGTTAAAGTTATTCTTCTGTGAT
rJMSF040K02+ GGATCATATTACTGAANTAGTTCATAGCTATTCGTTTGGTTAAAGTTATTCTTCTGTGAT
____________________________________________________________
consensus GGATCATATTACTGAATTAGTTCATAGCTATTCGTTTGGTTAAAGTTATTCTTCTGTGAT
. : . : . : . : . : . :
rJMSF018J02+ AAGAAATGGTGTTCT-TTGGTTTTTACCCATCTTTCTCTCTTGAAATCAATGTTGAGAAA
rJMSF040K02+ AAGAAATGGTGTTCTATTGGTTTNTACCCATCTTTCTCTCTTGAAATCAATGTTGAGAAA
____________________________________________________________
consensus AAGAAATGGTGTTCTATTGGTTTTTACCCATCTTTCTCTCTTGAAATCAATGTTGAGAAA
. : . : . : . : . : . :
rJMSF018J02+ TTGAGTCTTTTCTTC
rJMSF040K02+ TTGAGTCTTTTCTTCCTATGCTGTGATATGTTNCTGAATTTGCTGCCCCCTGCAAAAAGA
____________________________________________________________
consensus TTGAGTCTTTTCTTCCTATGCTGTGATATGTTNCTGAATTTGCTGCCCCCTGCAAAAAGA