Contig 012717:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+                                                                TCGCCG
rJMSF040I14+                                 CGGAGCAGCGTGTGGCCATGAATCAGTTGCTTCGCCG
                      ____________________________________________________________
consensus                                    CGGAGCAGCGTGTGGCCATGAATCAGTTGCTTCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          GGCAGGTATCTCCAATGGTGACCTTCTTATTATGTCAGATACCGATGAAATCCCGAGCCA
rJMSF040I14+          GGCAGGTATCTCCAATGGTGACCTTCTTATTATGTCAGATACCGATGAAATCCCGAGCCA
                      ____________________________________________________________
consensus             GGCAGGTATCTCCAATGGTGACCTTCTTATTATGTCAGATACCGATGAAATCCCGAGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          CCATACCATAAAATTACTCCAGTGGTGCGACGGGGTGCCCCCCCGTTCTGCATCTCGAGC
rJMSF040I14+          CCATACCATAAAATTACTCCAGTGGTGCGACGGGGTG-CCCCCCGTTCTGCATCTCGAGC
                      ____________________________________________________________
consensus             CCATACCATAAAATTACTCCAGTGGTGCGACGGGGTGCCCCCCCGTTCTGCATCTCGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          TGAGGCACTACTTGTACTCCTTCGAGTTCCCCGTGGACTATAGCAGCTGGCGTGCCACGG
rJMSF040I14+          TGAGGCACTACTTGTACTCCTTCGAGTTCCCCGTGGACTATAGCAGCTGGCGTGCCACGG
                      ____________________________________________________________
consensus             TGAGGCACTACTTGTACTCCTTCGAGTTCCCCGTGGACTATAGCAGCTGGCGTGCCACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          TCCACATTTACAGCCCGTGGACTCAATATCGACACTCCCGCCAGACCGACCGCATCCTCT
rJMSF040I14+          TCCACATTTACAGCCCGTGGACTCAATATCGACACTCCCGCCAGACCGACCGCATCCTCT
                      ____________________________________________________________
consensus             TCCACATTTACAGCCCGTGGACTCAATATCGACACTCCCGCCAGACCGACCGCATCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          CGGATGCGGGATGGCACTGCAGCTTCTGCTTCCGCTACCTCAAGGATTTCGTGTTCAAGA
rJMSF040I14+          CGGATGCGGGATGGCACTGCAGCTTCTGCTTCCGCTACCTCAAGGATTTCGTGTTCAAGA
                      ____________________________________________________________
consensus             CGGATGCGGGATGGCACTGCAGCTTCTGCTTCCGCTACCTCAAGGATTTCGTGTTCAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          TGACAGCATATAGCCACGCAGACCGAGTAAAGCACCGAGAGTTTCTCGACCATACGAGGA
rJMSF040I14+          TGACAGCATATAGCCACGCAGACCGAGTAAAGCACCGAGAGTTTCTCGACCATACGAGGA
                      ____________________________________________________________
consensus             TGACAGCATATAGCCACGCAGACCGAGTAAAGCACCGAGAGTTTCTCGACCATACGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          TCCAGAACCTCATCTGTCAAGGCTCTGATCTTTACGACATGTTGCCCGAGGAATATACCT
rJMSF040I14+          TCCAGAACCTCATCTGTCAAGGCTCTGATCTTTACGACATGTTGCCCGAGGAATATACCT
                      ____________________________________________________________
consensus             TCCAGAACCTCATCTGTCAAGGCTCTGATCTTTACGACATGTTGCCCGAGGAATATACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          TCAAAGAATTGATCAAGAAAATGGGATCTGTTCCTCCTTCAGCCTCTGCAGTTCACCTCC
rJMSF040I14+          TCAAAGAATTGATCAAGAAAATGGGATCTGTTCCTCCTTCAGCCTCTGCAGTTCACCTCC
                      ____________________________________________________________
consensus             TCAAAGAATTGATCAAGAAAATGGGATCTGTTCCTCCTTCAGCCTCTGCAGTTCACCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          CCGCTTATCTGATCGAAAATGCTGACGTTTTCAGATTCCTCCTCCCGGGAGGTTGTATGC
rJMSF040I14+          CCGCTTATCTGATCGAAAATGCTGACGTTTTCAGATTCCTCCTCCCGGGAGGTTGTATGC
                      ____________________________________________________________
consensus             CCGCTTATCTGATCGAAAATGCTGACGTTTTCAGATTCCTCCTCCCGGGAGGTTGTATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          GCCCGCCAGCATGATTTCCAGTTTTACGGTAAACACCGTTTTGATGATCTCTGTAACAGT
rJMSF040I14+          GCCCGCCAGCATGATTTCCAGTTTTACGGTAAACACCGTTTTGATGATCTCTGTAACAGT
                      ____________________________________________________________
consensus             GCCCGCCAGCATGATTTCCAGTTTTACGGTAAACACCGTTTTGATGATCTCTGTAACAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          TGCATTGTTGTTAGGAAAAACATTTTAGGTTGTATTCCAACTTAGAATCCTCATTTAACT
rJMSF040I14+          TGCATTGTTGTTAGGAAAAACATTTTAGGTTGTATTCCAACTTAGAATCCTCATTTAACT
                      ____________________________________________________________
consensus             TGCATTGTTGTTAGGAAAAACATTTTAGGTTGTATTCCAACTTAGAATCCTCATTTAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O22+          TTTTTCTTTTCACTTATATGTTGAGCATCCTA                            
rJMSF040I14+          TTTTTCTTTTCACTTATATGTTGAGCATCCTATACAATCTCAGGATGGAGAAGTATATGA
                      ____________________________________________________________
consensus             TTTTTCTTTTCACTTATATGTTGAGCATCCTATACAATCTCAGGATGGAGAAGTATATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040I14+          AATAGGCAACTAGGAGAAATTGTTGTATGTGTTGTTCAATACTTCAATGTACTGCACTTC
                      ____________________________________________________________
consensus             AATAGGCAACTAGGAGAAATTGTTGTATGTGTTGTTCAATACTTCAATGTACTGCACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040I14+          AGGATATATTATAAGTTTAAACATCCAAAAGGATGCTTTAACTTCAGCTGAAATTCAAGT
                      ____________________________________________________________
consensus             AGGATATATTATAAGTTTAAACATCCAAAAGGATGCTTTAACTTCAGCTGAAATTCAAGT