Contig 012716:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF040G16+                                                              CTCTTTTT
                      ____________________________________________________________
consensus                                                                 CTCTTTTT
 
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rJMSF040G16+          AGCCTCTCGGTTATTGAGGATAACAAGATTAAGATCGGGAAGTCTGGGGCAATACAACCG
                      ____________________________________________________________
consensus             AGCCTCTCGGTTATTGAGGATAACAAGATTAAGATCGGGAAGTCTGGGGCAATACAACCG
 
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rJMSF011E21+                                                               AGCTTTG
JMSF011E21-                                                                AGCTTTG
rJMSF040G16+          CTTGTTGATTTATTGGGAAATGGAACTCCTAGGGGCAAGAAAGATGCAGCCACAGCTTTG
                      ____________________________________________________________
consensus             CTTGTTGATTTATTGGGAAATGGAACTCCTAGGGGCAAGAAAGATGCAGCCACAGCTTTG
 
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rJMSF011E21+          TTTAACTTGTCAATACATCCTGAAAACAAGACTCGAATTGTGGACGCAGGTGCAGTAAAG
JMSF011E21-           TTTAACTTGTCAATACATCCTGAAAACAAGACTCGAATTGTGGACGCAGGTGCAGTAAAG
rJMSF040G16+          TTTAACTTGTCAATACATCCTGAAAACAAGACTCGAATTGTGGACGCAGGTGCAGTAAAG
                      ____________________________________________________________
consensus             TTTAACTTGTCAATACATCCTGAAAACAAGACTCGAATTGTGGACGCAGGTGCAGTAAAG
 
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rJMSF011E21+          TACCTCGTAGACTTGATGGACCCCGCTGCTGGGATGGTTGATAAAGCAGTTGCCGTTCTG
JMSF011E21-           TACCTCGTAGACTTGATGGACCCCGCTGCTGGGATGGTTGATAAAGCAGTTGCCGTTCTG
rJMSF040G16+          TACCTCGTAGACTTGATGGACCCCGCTGCTGGGATGGTTGATAAAGCAGTTGCCGTTCTG
                      ____________________________________________________________
consensus             TACCTCGTAGACTTGATGGACCCCGCTGCTGGGATGGTTGATAAAGCAGTTGCCGTTCTG
 
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rJMSF011E21+          TCAAATCTTTCTACCATTCACGAGGGAAGAGTAGCAATTGGTCAGGAAGAAGGGATCCCC
JMSF011E21-           TCAAATCTTTCTACCATTCACGAGGGAAGAGTAGCAATTGGTCAGGAAGAAGGGATCCCC
rJMSF040G16+          TCAAATCTTTCTACCATTCACGAGGGAAGAGTAGCAATTGGTCAGGAAGAAGGGATCCCC
                      ____________________________________________________________
consensus             TCAAATCTTTCTACCATTCACGAGGGAAGAGTAGCAATTGGTCAGGAAGAAGGGATCCCC
 
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rJMSF011E21+          GTTCTGGTCGAGGTTGTCGAGTTGGGATCTGCAAGAGGAAAGGAAAATGCAGCTGCTGCT
JMSF011E21-           GTTCTGGTCGAGGTTGTCGAGTTGGGATCTGCAAGAGGAAAGGAAAATGCAGCTGCTGCT
rJMSF040G16+          GTTCTGGTCGAGGTTGTCGAGTTGGGATCTGCAAGAGGAAAGGAAAATGCAGCTGCTGCT
                      ____________________________________________________________
consensus             GTTCTGGTCGAGGTTGTCGAGTTGGGATCTGCAAGAGGAAAGGAAAATGCAGCTGCTGCT
 
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rJMSF011E21+          CTACTGCAATTATGCACAAACAGTGGTAGGCACTGTAATATGGTTCTCCAAGAAGGCGCT
JMSF011E21-           CTACTGCAATTATGCACAAACAGTGGTAGGCACTGTAATATGGTTCTCCNAGAAGGCGCT
rJMSF040G16+          CTACTGCAATTATGCACAAACAGTGGTAGGCACTGTAATATGGTTCTCCAAGAAGGCGCT
                      ____________________________________________________________
consensus             CTACTGCAATTATGCACAAACAGTGGTAGGCACTGTAATATGGTTCTCCAAGAAGGCGCT
 
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rJMSF011E21+          GTACCTCCATTGGTAGCACTCTCGCAATCTGGCACCCCCAGAGCTAAAGAAAAGGCTCAA
JMSF011E21-           GTACCTCCATTGGTAGCACTCTCGCAATCTGGC                           
rJMSF040G16+          GTACCTCCATTGGTAGCACTCTCGCAATCTGGCACCCCCAGAGCTAAAGAAAAGGCTCAA
                      ____________________________________________________________
consensus             GTACCTCCATTGGTAGCACTCTCGCAATCTGGCACCCCCAGAGCTAAAGAAAAGGCTCAA
 
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rJMSF011E21+          GCACTTCTTAGCTACTTCAGAAATCAGCGTCCTGGTAACGCAGGCAGGAACTGATTTTGT
rJMSF040G16+          GCACTTCTTAGCTACTTCAGAAATCAGCGTCCTGGTAACGCAGGCAGGAACTGATTTTGT
                      ____________________________________________________________
consensus             GCACTTCTTAGCTACTTCAGAAATCAGCGTCCTGGTAACGCAGGCAGGAACTGATTTTGT
 
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rJMSF011E21+          AGATTGCGGTTTGGACAACATCCCGTGTTTGAGGTACGAGGTTATTATGTGTGTAAATCT
rJMSF040G16+          AGATTGCGGTTTGGACAACATCCCGTGTTTGAGGTACGAGGTTATTATGTGTGTAAATCT
                      ____________________________________________________________
consensus             AGATTGCGGTTTGGACAACATCCCGTGTTTGAGGTACGAGGTTATTATGTGTGTAAATCT
 
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rJMSF011E21+          GGTGTTAGAAATAACGTGTGTTAATGTGTAGACTACTATTTCATGTACTTGTGATATTTC
rJMSF040G16+          GGTGTTAGAAATAACGTGTGTTAATGTGTAGACTACTATTTCATGTACTTGTGATATTTC
                      ____________________________________________________________
consensus             GGTGTTAGAAATAACGTGTGTTAATGTGTAGACTACTATTTCATGTACTTGTGATATTTC
 
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rJMSF011E21+          TGAGATGTGGAAAAGGTACTGATTTTGACACTCTCTGTGACCATGTAAGATTT       
rJMSF040G16+          TGAGATGTGGAAAAGGTACTGATTTTGACACTCTCTGTGAGCATGTAAGATTTTACCTTT
                      ____________________________________________________________
consensus             TGAGATGTGGAAAAGGTACTGATTTTGACACTCTCTGTGAGCATGTAAGATTTTACCTTT