Contig 012712:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038C07Sequence619012712 (3)ref|XP_009596197.1|2e-35PREDICTED: serine/threonine-protein kinase 3-like isoform X2 [Nicotiana tomento
JMSF035K15Sequence645013456 (2)emb|CDP05943.1|2e-48unnamed protein product [Coffea canephora]776012712 (3)ref|XP_009794387.1|3e-40PREDICTED: serine/threonine-protein kinase 3-like isoform X2 [Nicotiana sylvest
JMSF039I14Sequence655013456 (2)emb|CDP05943.1|2e-78unnamed protein product [Coffea canephora]858012712 (3)ref|XP_006348267.1|2e-47PREDICTED: serine/threonine-protein kinase sid1-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF039I14+                                                    GGAATTCCAGACAGATCC
                      ____________________________________________________________
consensus                                                       GGAATTCCAGACAGATCC
 
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rJMSF039I14+          TCAAGTGCATCCTTTGAAGATAGCGAAACAAACCTCTCAGAGGGCCAAGGCTTCCATTCA
                      ____________________________________________________________
consensus             TCAAGTGCATCCTTTGAAGATAGCGAAACAAACCTCTCAGAGGGCCAAGGCTTCCATTCA
 
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rJMSF035K15+                             AATGTTCGAGAAAGAGCAATGAT-GGCAAGACCAACAGAAA
rJMSF039I14+          AGCAGCGCTAAAGAAAGGAAATGTTCGAGAAAGAGCAATGATGGGCAAGACCAACAGAAA
                      ____________________________________________________________
consensus             AGCAGCGCTAAAGAAAGGAAATGTTCGAGAAAGAGCAATGATGGGCAAGACCAACAGAAA
 
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rJMSF035K15+          TGGGCATGAAAATAGAAGCACAGGCCCATCAACAGCAAGCTCTGATTCTTCAAGAAATTC
rJMSF039I14+          TGGGCATGAAAATAGAAGCACAGGCCCATCAACAGCAAGCTCTGATTCTTCAAGAAATTC
                      ____________________________________________________________
consensus             TGGGCATGAAAATAGAAGCACAGGCCCATCAACAGCAAGCTCTGATTCTTCAAGAAATTC
 
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rJMFF038C07+                            ACAAAAAGCATTTTCAAAATCACCTCATACTAGAGATGATGC
rJMSF035K15+          CCGTGATTACTTTGAAGCACAAAAAGCATTTTCAAAATCACCTCATACTAGAGATGATGC
rJMSF039I14+          CCGTGATTACTTTGAAGCACAAAAAGCATTTTCAAAATCACCTCATACTAGAGATGATGC
                      ____________________________________________________________
consensus             CCGTGATTACTTTGAAGCACAAAAAGCATTTTCAAAATCACCTCATACTAGAGATGATGC
 
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rJMFF038C07+          TGCTGCTAGAATAGCCCCACCACCATCTTTATCGATTCTTCTCATCCCATCAATAAAGGA
rJMSF035K15+          TGCTGCTAGAATAGCCCCACCACCATCTTTATCGATTCTTCTCATCCCATCAATAAAGGA
rJMSF039I14+          TGCTGCTAGAATAGCCCCACCACCATCTTTATCGATTCTTCTCATCCCATCAATAAAGGA
                      ____________________________________________________________
consensus             TGCTGCTAGAATAGCCCCACCACCATCTTTATCGATTCTTCTCATCCCATCAATAAAGGA
 
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rJMFF038C07+          GGCTGTTGCTGGGGAAGTCGAAGGACCATTTGTGCAGAATATGGCAAATTCTTTTCTGGA
rJMSF035K15+          GGCTGTTGCTGGGGAAGTCGAAGGACCATTTGTGCAGAATATGGCAAATTCTTTTCTGGA
rJMSF039I14+          GGCTGTTGCTGGGGAAGTCGAAGGACCATTTGTGCAGAATATGGCAAATTCTTTTCTGGA
                      ____________________________________________________________
consensus             GGCTGTTGCTGGGGAAGTCGAAGGACCATTTGTGCAGAATATGGCAAATTCTTTTCTGGA
 
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rJMFF038C07+          AATGGAGCGCATGAAGCCTGGGTCTTGTGATCTTTTTGTCNCCAGATTACTCCAGCGATT
rJMSF035K15+          AATGGAGCGCATGAAGCCTGGGTCTTGTGATCTTTTTGTCACCAGATTACTCCAGCGATT
rJMSF039I14+          AATGGAGCGCATGAAGCCTGGGTCTTGTGATCTTTTTGTCACCAGATTACTCCAGCGATT
                      ____________________________________________________________
consensus             AATGGAGCGCATGAAGCCTGGGTCTTGTGATCTTTTTGTCACCAGATTACTCCAGCGATT
 
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rJMFF038C07+          GGCGAGTTCCAAAGAATCTTNTTTGAAAGATCTGCAAGATTTGGNTACTCGCAAATTCAC
rJMSF035K15+          GGCGAGTTCCAAAGAATCTTCTTTGAAAGATCTGCAAGATTTGGCTACTCGCAAATTCAC
rJMSF039I14+          GGCGAGTTCCAAAGAATCTTCTTTGAAAGATCTGCAAGATTTGGCTACTCGCAAATTCAC
                      ____________________________________________________________
consensus             GGCGAGTTCCAAAGAATCTTCTTTGAAAGATCTGCAAGATTTGGCTACTCGCAAATTCAC
 
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rJMFF038C07+          AAAGGGCAGGATGGAAACCGATAATGCAACCACTGAAGCTGATAGCAAGAAAAAGCAGCA
rJMSF035K15+          AAAGGGCAGGATGGAAACCGATAATGCAACCACTGAAGCTGATAGCAAGAAAAAGCAGCA
rJMSF039I14+          AAAGGGCAGGATGGAAACCGATAATGCAACCACTGAAGCTGATAGCAAGAAAAAGCAGCA
                      ____________________________________________________________
consensus             AAAGGGCAGGATGGAAACCGATAATGCAACCACTGAAGCTGATAGCAAGAAAAAGCAGCA
 
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rJMFF038C07+          GAGCAAAGAGCTTCAATCAAATTCCAACATGACCCCACTAGCCAGGTTCTTGCTCTCAAG
rJMSF035K15+          GAGCAAAGAGCTTCAATCAAATTCCAACATGACCCCACTAGCCAGGTTCTTGCTCTCAAG
rJMSF039I14+          GAGCAAAGAGCTTCAATCAAATTCCAACATGACCCCACTAGCCAGGTTCTTGCTCTCAAG
                      ____________________________________________________________
consensus             GAGCAAAGAGCTTCAATCAAATTCCAACATGACCCCACTAGCCAGGTTCTTGCTCTCAAG
 
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rJMFF038C07+          ATGGCAAGGGCATGCTTCCCGGGATTTAAATTCTTAATATGGAGGTTTGATTCGTTTACA
rJMSF035K15+          ATGGCAAGGGCATGCTTCCCGGGATTTAAATTCTTAATATGGAGGTTTGATTCGTTTACA
rJMSF039I14+          ATGGCAAGGGCATGCTTCCCGGGATTTAAATTCTTAATATGGAGGTTTGATTCGTTTACA
                      ____________________________________________________________
consensus             ATGGCAAGGGCATGCTTCCCGGGATTTAAATTCTTAATATGGAGGTTTGATTCGTTTACA
 
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rJMFF038C07+          TTCTTGTTTTCTGATTTTGCTGCTTCTGAGTTTATCATGATTCAATGTACATAACATTCC
rJMSF035K15+          TTCTTGTTTTCTGATTTTGCTGCTTCTGAGTTTATCATGATTCAATGTACATAACATTCC
rJMSF039I14+          TTCTTGTTTTCTGATTTTGCTGCTTCTGAGTTTATCATGATTCAATGTACATAACATTCC
                      ____________________________________________________________
consensus             TTCTTGTTTTCTGATTTTGCTGCTTCTGAGTTTATCATGATTCAATGTACATAACATTCC
 
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rJMFF038C07+          TATTCTAAGGAAACCATGTAAATTATATTTACCCATGCAATTNTTTTCTTTTCCTTGGGT
rJMSF035K15+          TATTCTAAGGAAACCATGTAAATTATATTTACCCATGCAATTTTTTTCTTTTCCTTGGGT
rJMSF039I14+          TATTCTAAGGAAACCATGTAAATTATATTTACCCATGCAATTTTTTTCTTTTCCTTGGGT
                      ____________________________________________________________
consensus             TATTCTAAGGAAACCATGTAAATTATATTTACCCATGCAATTTTTTTCTTTTCCTTGGGT
 
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rJMFF038C07+          TCCAGTTGTTCACCTATTCTGGTTNGTATTGTTTCAT                       
rJMSF035K15+          TCCAGTTGTTCACCTATTCTGGTTTGTATTGTTTCATCCTG                   
rJMSF039I14+          TCCAGTTGTTCACCTATTCTGGTTTGTATTGTTTCATCCTGTAACCAGAAATTAATATAG
                      ____________________________________________________________
consensus             TCCAGTTGTTCACCTATTCTGGTTTGTATTGTTTCATCCTGTAACCAGAAATTAATATAG