| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041I03 | Sequence | 620 | 003418 (17) | ref|XP_011086174.1| | 1e-68 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like [Sesamum indicum] | 538 | 012710 (3) | ref|XP_011096101.1| | 4e-22 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like [Sesamum indicum] r |
| JMFF041M04 | Sequence | 643 | 003418 (17) | ref|XP_011086174.1| | 3e-74 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like [Sesamum indicum] | 608 | 012710 (3) | ref|XP_011096101.1| | 1e-38 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like [Sesamum indicum] r |
| JMSF039G12 | Sequence | 653 | 003418 (17) | ref|XP_011086174.1| | 1e-57 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like [Sesamum indicum] | 855 | 012710 (3) | gb|KDO41373.1| | 4e-79 | hypothetical protein CISIN_1g0042941mg, partial [Citrus sinensis] gb|KDO41374.1| |
This contig is upended
. : . : . : . : . : . :
rJMSF039G12+ CAACGGCGGGCTTGT
____________________________________________________________
consensus CAACGGCGGGCTTGT
. : . : . : . : . : . :
rJMSF039G12+ TCAAGAAATGGCGCATATCGCCAACGGTCGTGATCCTGGAAACTGCGTCTCTCTCTTGCG
____________________________________________________________
consensus TCAAGAAATGGCGCATATCGCCAACGGTCGTGATCCTGGAAACTGCGTCTCTCTCTTGCG
. : . : . : . : . : . :
rJMSF039G12+ AGTTAACAGCGCAAATTCAAGTCAGAGCAATATGCTGATTCTCCAGGAGAGTTGTACGGA
____________________________________________________________
consensus AGTTAACAGCGCAAATTCAAGTCAGAGCAATATGCTGATTCTCCAGGAGAGTTGTACGGA
. : . : . : . : . : . :
rJMFF041M04+ GCCATGAATGTTGTGTT
rJMSF039G12+ TTCGACAGGATCCTATGTTATCTATGCTCCGGTGGACATTGTGGCCATGAATGTTGTGTT
____________________________________________________________
consensus TTCGACAGGATCCTATGTTATCTATGCTCCGGTGGACATTGTGGCCATGAATGTTGTGTT
. : . : . : . : . : . :
rJMFF041I03+ TTCCCGA
rJMFF041M04+ GAGCGGCGGAGATCCTGACTATGTTGCGTTGCTGCCTTCCGGTTTCGCCATTCTTCCCGA
rJMSF039G12+ GAGCGGCGGAGATCCTGACTATGTTGCGTTGCTGCCTTCCGGTTTCGCCATTCTTCCCGA
____________________________________________________________
consensus GAGCGGCGGAGATCCTGACTATGTTGCGTTGCTGCCTTCCGGTTTCGCCATTCTTCCCGA
. : . : . : . : . : . :
rJMFF041I03+ CGGGCCGTCGAGCAACGGGGCTGTGAATCCCGAGGTTGGTTCCGGCGGCGGGTCTCTAAT
rJMFF041M04+ CGGGCCGTCGAGCAACGGGGCTGTGAATCCCGAGGTTGGTTCCGGCGGCGGGTCTCTAAT
rJMSF039G12+ CGGGCCGTCGAGCAACGGGGCTGTGAATCCCGAGGTTGGTTCCGGCGGCGGGTCTCTACT
____________________________________________________________
consensus CGGGCCGTCGAGCAACGGGGCTGTGAATCCCGAGGTTGGTTCCGGCGGCGGGTCTCTAAT
. : . : . : . : . : . :
rJMFF041I03+ CACGGTGGCGTTTCAGATATTGGTGGATTCGGTCCCGACGGCGAAGCTCTCTCTTGGATC
rJMFF041M04+ CACGGTGGCGTTTCAGATATTGGTGGATTCGGTCCCGACGGCGAAGCTCTCTCTTGGATC
rJMSF039G12+ CACGGTGGCGTTTCAGATATTGGTGGATTCGGTCCCGACGGCGAAGCTCTCTCTTGGATC
____________________________________________________________
consensus CACGGTGGCGTTTCAGATATTGGTGGATTCGGTCCCGACGGCGAAGCTCTCTCTTGGATC
. : . : . : . : . : . :
rJMFF041I03+ GGTGGCCACCGTGAACAGCCTCATCAAGTGCACCGTCGAAAGGATTAAAAGCGCCGTTGC
rJMFF041M04+ GGTGGCCACCGTGAACAGCCTCATCAAGTGCACCGTCGAAAGGATTAAAAGCGCCGTTGC
rJMSF039G12+ GGTGGCCACCGTGAACAGCCTCATCAAGTGCACCGTCGAAAGGATTAAAAGCACCGTTGC
____________________________________________________________
consensus GGTGGCCACCGTGAACAGCCTCATCAAGTGCACCGTCGAAAGGATTAAAAGCGCCGTTGC
. : . : . : . : . : . :
rJMFF041I03+ GTGCGAAAGTGCATGATCTCATCTTCAATAAAATGAATGTGCAGTGGAACATGAAGGAGT
rJMFF041M04+ GTGCGAAAGTGCATGATCTCATCTTCAATAAAATGAATGTGCAGTGGAACATGAAGGAGT
rJMSF039G12+ GTGCGAAAGTGCATGATCTCATCTTCAATAAAATGAATGTGCAGTGGAACATGAAGGAGT
____________________________________________________________
consensus GTGCGAAAGTGCATGATCTCATCTTCAATAAAATGAATGTGCAGTGGAACATGAAGGAGT
. : . : . : . : . : . :
rJMFF041I03+ AAGGACAAAAGAAGCAAGCTAGAAGGGTGTGTTTACTCTTGAGGATAGGGTGATCAAAGA
rJMFF041M04+ AAGGACAAAAGAAGCAAGCTAGAAGGGTGTGTTTACTCTTGAGGATAGGGTGATCAAAGA
rJMSF039G12+ AAGGACAAAAGAAGCAAGCTAGAAGGGTGTGTTTACTCTTGAGGATAGGGTGATCAAAGA
____________________________________________________________
consensus AAGGACAAAAGAAGCAAGCTAGAAGGGTGTGTTTACTCTTGAGGATAGGGTGATCAAAGA
. : . : . : . : . : . :
rJMFF041I03+ AAGGGGAAGAAGTCAAGAACGCACCGTATATATATGTGTGTGTGTAGTCCTTGTTGTGTG
rJMFF041M04+ AAGGGGAAGAAGTCAAGAACGCACCGTATATATATGTGTGTGTGTAGTCCTTGTTGTGTG
rJMSF039G12+ AAGGGGAAGAAGTCAAGAACGCACCGTATATATATGTGTGTGTGTAGTCCTTGTTGTGTG
____________________________________________________________
consensus AAGGGGAAGAAGTCAAGAACGCACCGTATATATATGTGTGTGTGTAGTCCTTGTTGTGTG
. : . : . : . : . : . :
rJMFF041I03+ GTGTTTTGTTGAGGAAAGTGAAGTGGCATTTCACCAGGCTGCAAGGGTGATGGTTCGGGT
rJMFF041M04+ GTGTTTTGTTGAGGAAAGTGAAGTGGCATTTCACCAGGCTGCAAGGGTGATGGTTCGGGT
rJMSF039G12+ GTGTTTTGTTGAGGAAAGTGAAGTGGCATTTCACCAGGCTGCAAGGGTGATGGTTCGGGT
____________________________________________________________
consensus GTGTTTTGTTGAGGAAAGTGAAGTGGCATTTCACCAGGCTGCAAGGGTGATGGTTCGGGT
. : . : . : . : . : . :
rJMFF041I03+ ATTGACTTCGTCATTATAGTCGAGTGGACAAAAATGATATTGTAATTCGAGTGAATTGAG
rJMFF041M04+ ATTGACTTCGTCATTATAGTCGAGTGGACAAAAATGATATTGTAATTCGAGTGAATTGAG
rJMSF039G12+ ATTGACTTCGTCATTATAGTCGAGTGGACAAAAATGATATTGTAATTCGAGTGAATTGAG
____________________________________________________________
consensus ATTGACTTCGTCATTATAGTCGAGTGGACAAAAATGATATTGTAATTCGAGTGAATTGAG
. : . : . : . : . : . :
rJMFF041I03+ TATGTAAACGCTAGAGTTTAATACAATTATAATTGTATGATTATATCTATT
rJMFF041M04+ TATGTAAACGCTAGAGTTTAATACAATTATAATTGTATGATTATATCTATT
rJMSF039G12+ TATGTAAACGCTAGAGTTTAATACAATTATAATTGTATGATTATATCTATTATTATGTAG
____________________________________________________________
consensus TATGTAAACGCTAGAGTTTAATACAATTATAATTGTATGATTATATCTATTATTATGTAG
. : . : . : . : . : . :
rJMSF039G12+ GTCTTCAATATCTTTTGCTTTCTTAGTTGAGTATAGGTTCTATTCCCTTTTGTTATGAGC
____________________________________________________________
consensus GTCTTCAATATCTTTTGCTTTCTTAGTTGAGTATAGGTTCTATTCCCTTTTGTTATGAGC