Contig 012709:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN012D23Sequence619012709 (2)ref|XP_004250053.1|2e-108PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Solanum lycopers
JMSF039F10Sequence666020063ref|XP_007009969.1|2e-52Armadillo/beta-catenin repeat family protein / kinesin motor family protein iso898012709 (2)ref|XP_004250053.1|4e-114PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Solanum lycopers

Alignment

This contig is upended


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JMFN012D23-                                         GAAGAAGTTGGCCTCCAGAAGCTAGTATCA
                      ____________________________________________________________
consensus                                           GAAGAAGTTGGCCTCCAGAAGCTAGTATCA
 
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JMFN012D23-           CTATTAACAGCTGGGGATTTGGAAGTCCAAATTCATGCTGTCAAAGTGATAGCTAACCTT
                      ____________________________________________________________
consensus             CTATTAACAGCTGGGGATTTGGAAGTCCAAATTCATGCTGTCAAAGTGATAGCTAACCTT
 
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JMFN012D23-           GCTGCAGAAGACAACAATCGGGAAAAAATTGTGCAGGAAGGGGGCCTAGATGCATTGCTT
rJMSF039F10+                                AAAAAATTGTGCAGGAAGGGGGCCTAGATGCATTGCTT
                      ____________________________________________________________
consensus             GCTGCAGAAGACAACAATCGGGAAAAAATTGTGCAGGAAGGGGGCCTAGATGCATTGCTT
 
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JMFN012D23-           ATGCTGCTGCAATCATCAGAAAATGCAATCATACTCCGAGTAGCTTCTGGCGCAATTGCC
rJMSF039F10+          ATGCTGCTGCAATCATCAGAAAATGCAATCATACTCCGAGTAGCTTCTGGCGCAATTGCC
                      ____________________________________________________________
consensus             ATGCTGCTGCAATCATCAGAAAATGCAATCATACTCCGAGTAGCTTCTGGCGCAATTGCC
 
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JMFN012D23-           AATTTGGCAATGAATGAGATGAACCAAGATTTAATAGTAAGTAAAGGAGGTGTTAAACTT
rJMSF039F10+          AATTTGGCAATGAATGAGATGAACCAAGATTTAATAGTAAGTAAAGGAGGTGTTAAACTT
                      ____________________________________________________________
consensus             AATTTGGCAATGAATGAGATGAACCAAGATTTAATAGTAAGTAAAGGAGGTGTTAAACTT
 
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JMFN012D23-           CTGGCAAATACAGCTTCTAGAACGGATGATCCCCAAACCTTAAGGATGGTTGCTGGAGCA
rJMSF039F10+          CTGGCAAATACAGCTTCTAGAACGGATGATCCCCAAACCTTAAGGATGGTTGCTGGAGCA
                      ____________________________________________________________
consensus             CTGGCAAATACAGCTTCTAGAACGGATGATCCCCAAACCTTAAGGATGGTTGCTGGAGCA
 
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JMFN012D23-           ATTTCAAATTTGTGTGGAAATGAAAAGCTACATGTTATGCTGAGAGAGGAGGGGGCTATC
rJMSF039F10+          ATTTCAAATTTGTGTGGAAATGAAAAGCTACATGTTATGCTGAGAGAGGAGGGGGCTATC
                      ____________________________________________________________
consensus             ATTTCAAATTTGTGTGGAAATGAAAAGCTACATGTTATGCTGAGAGAGGAGGGGGCTATC
 
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JMFN012D23-           AGAACCCTTCTGGAAATGGCTAGATCTGGGAACATCGATACTGTTGCTCAGGTTTCCAGA
rJMSF039F10+          AGAACCCTTCTGGAAATGGCTAGATCTGGGAACATCGATACTGTTGCTCAGGTTTCCAGA
                      ____________________________________________________________
consensus             AGAACCCTTCTGGAAATGGCTAGATCTGGGAACATCGATACTGTTGCTCAGGTTTCCAGA
 
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JMFN012D23-           GGATTGGCCAACTTTGCAAAGTGTGAATCTCGAGGAACTATCCAAGGGCATAGAAGAGGG
rJMSF039F10+          GGATTGGCCAACTTTGCAAAGTGTGAATCTCGAGGAACTATCCAAGGGCATAGAAGAGGG
                      ____________________________________________________________
consensus             GGATTGGCCAACTTTGCAAAGTGTGAATCTCGAGGAACTATCCAAGGGCATAGAAGAGGG
 
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JMFN012D23-           TGTTCGCTTCTTCTGGAAGATGGTGTTCTGGCATGGTTGATCACCAACTCCAATAATGCC
rJMSF039F10+          TGTTCGCTTCTTCTGGAAGATGGTGTTCTGGCATGGTTGATCACCAACTCCAATAATGCC
                      ____________________________________________________________
consensus             TGTTCGCTTCTTCTGGAAGATGGTGTTCTGGCATGGTTGATCACCAACTCCAATAATGCC
 
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JMFN012D23-           TCTGCAACAACTCGGCGCCAGATTGAACTAGCCCTTTGCCATTTAGCGC           
rJMSF039F10+          TCTGCAACAACTCGGCGCCAGATTGAACTAGCCCTTTGCCATTTAGCGCAAAATGATGAC
                      ____________________________________________________________
consensus             TCTGCAACAACTCGGCGCCAGATTGAACTAGCCCTTTGCCATTTAGCGCAAAATGATGAC
 
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rJMSF039F10+          AATGCCAAAGACTTTATATCAAGTGGGGCGTTACAAGAACTTGTACGGATATCAAATGAA
                      ____________________________________________________________
consensus             AATGCCAAAGACTTTATATCAAGTGGGGCGTTACAAGAACTTGTACGGATATCAAATGAA
 
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rJMSF039F10+          TCTGTTAGAGAGGATATTCGTAATCTGGCGAAGAAGACATTGAAGTTGAACCCAACATTC
                      ____________________________________________________________
consensus             TCTGTTAGAGAGGATATTCGTAATCTGGCGAAGAAGACATTGAAGTTGAACCCAACATTC
 
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rJMSF039F10+          CAATCTCAGATACATGTCAAATGAACAAAGTAGTGAAGTACCCGCAAGGAAGGAACACTG
                      ____________________________________________________________
consensus             CAATCTCAGATACATGTCAAATGAACAAAGTAGTGAAGTACCCGCAAGGAAGGAACACTG
 
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rJMSF039F10+          ATTATTGAGTCCGTGTTAAGCTAAAGCTATTACAGTGTACAAACTAGGTCTCCTTTTTTA
                      ____________________________________________________________
consensus             ATTATTGAGTCCGTGTTAAGCTAAAGCTATTACAGTGTACAAACTAGGTCTCCTTTTTTA
 
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rJMSF039F10+          CTAGACATTAAACAGAATCAGGTTGAAACCTTGCAAAAATTGTAAATGAAATCTGAGAGA
                      ____________________________________________________________
consensus             CTAGACATTAAACAGAATCAGGTTGAAACCTTGCAAAAATTGTAAATGAAATCTGAGAGA