Contig 012706:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010B17Sequence571012706 (4)ref|XP_006362148.1|1e-62PREDICTED: VIN3-like protein 2-like [Solanum tuberosum]705012706 (4)ref|XP_006362148.1|3e-64PREDICTED: VIN3-like protein 2-like [Solanum tuberosum]
JMFF049I13Sequence532012706 (4)ref|XP_006362148.1|7e-55PREDICTED: VIN3-like protein 2-like [Solanum tuberosum]
JMSF039D23Sequence652022198ref|XP_009799194.1|4e-92PREDICTED: VIN3-like protein 2 isoform X1 [Nicotiana sylvestris]819012706 (4)ref|XP_006366900.1|8e-53PREDICTED: VIN3-like protein 2-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF010B17-            ATTAACCTAGATGAGATGAGGTTTGCAATTGAATTGTATCCTCCTCATCGATCAGCTC
rJMSF039D23-                               GGTTTGCAATTGAATTGTATCCTCCTCATCGATCAGCTC
                      ____________________________________________________________
consensus               ATTAACCTAGATGAGATGAGGTTTGCAATTGAATTGTATCCTCCTCATCGATCAGCTC
 
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JMFF010B17+                                                      GATGATGGAGTTGAATT
rJMFF010B17-          CTAATAAGAGAAGAGAAGAGAATAGAAAGCTAGGGGGTCTAGGGATGATGGAGTTGAATT
rJMSF039D23-          CTAATAAGAGAAGAGAAGAGAATAGAAAGCTAGGGGGTCTAGGGATGATGGAGTTGAATT
                      ____________________________________________________________
consensus             CTAATAAGAGAAGAGAAGAGAATAGAAAGCTAGGGGGTCTAGGGATGATGGAGTTGAATT
 
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JMFF010B17+           CAGTGCCAAAGCTTAAGGCAAAAGCCTGCAGGCACCATAGAAGACTTCTTGTTTGAGATG
JMFF049I13+                                              CATAGAAGACTTCTTGTTTGAGATG
rJMFF010B17-          CAGTGCCAAAGCTTAAGGCAAAAGCCTGCAGGCACCATAGAAGACTTCTTGTTTGAGATG
rJMSF039D23-          CAGTGCCAAAGCTTAAGGCAAAAGCCTGCAGGCACCATAGAAGACTTCTTGTTTGAGATG
                      ____________________________________________________________
consensus             CAGTGCCAAAGCTTAAGGCAAAAGCCTGCAGGCACCATAGAAGACTTCTTGTTTGAGATG
 
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JMFF010B17+           ACATCTGAGAAGCTGTGAACCAACTGCCCAGCCAATGATTCTGGATCTTCAATAAGTGTA
JMFF049I13+           ACATCTGAGAAGCTGTGAACCAACTGCCCAGCCAATGATTCTGGATCTTCAATAAGTGTA
rJMFF010B17-          ACATCTGAGAAGCTGTGAACCAACTGCCCAGCCAATGATTCTGGATCTTCAATAAGTGTA
rJMSF039D23-          ACATCTGAGAAGCTGTGAACCAACTGCCCAGCCAATGATTCTGGATCTTCAATAAGTGTA
                      ____________________________________________________________
consensus             ACATCTGAGAAGCTGTGAACCAACTGCCCAGCCAATGATTCTGGATCTTCAATAAGTGTA
 
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JMFF010B17+           TCTACAAATGCCTTCACTACCCTAACCTCTTGACCACTTGCTCTCAAACTGTACCACGTC
JMFF049I13+           TCTACAAATGCCTTCACTACCCTAACCTCTTGACCACTTGCTCTCAAACTGTACCACGTC
rJMFF010B17-          TCTACAAATGCCTTCACTACCCTAACCTCTTGACCACTTGCTCTCAAACTGTACCACGTC
rJMSF039D23-          TCTACAAATGCCTTCACTACCCTAACCTCTTGACCACTTGCTCTCAAACTGTACCACGTC
                      ____________________________________________________________
consensus             TCTACAAATGCCTTCACTACCCTAACCTCTTGACCACTTGCTCTCAAACTGTACCACGTC
 
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JMFF010B17+           AAGAACTTCTGCCTAAATTCCATCTCAATATGCCCACTGCATTCTAACCATCTGATTACT
JMFF049I13+           AAGAACTTCTGCCTAAATTCCATCTCAATATGCCCACTGCATTCTAACCATCTGATTACT
rJMFF010B17-          AAGAACTTCTGCCTAAATTCCATCTCAATATGCCCACTGCATTCTAACCATCTGATTACT
rJMSF039D23-          AAGAACTTCTGCCTAAATTCCATCTCAATATGCCCACTGCATTCTAACCATCTGATTACT
                      ____________________________________________________________
consensus             AAGAACTTCTGCCTAAATTCCATCTCAATATGCCCACTGCATTCTAACCATCTGATTACT
 
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JMFF010B17+           TTCACATAGTATTCAAAATCATCCTTGTCCCCACCACATTGTTTATCAAACCTTTCGCTG
JMFF049I13+           TTCACATAGTATTCAAAATCATCCTTGTCCCCACCACATTGTTTATCAAACCTTTCGCTG
rJMFF010B17-          TTCACATAGTATTCAAAATCATCCTTGTCCCCACCACATTGTTTATCAAACCTTTCGCTG
rJMSF039D23-          TTCACATAGTATTCAAAATCATCCTTGTCCCCACCACATTGTTTATCAAACCTTTCGCTG
                      ____________________________________________________________
consensus             TTCACATAGTATTCAAAATCATCCTTGTCCCCACCACATTGTTTATCAAACCTTTCGCTG
 
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JMFF010B17+           CTTCTCTTCTTCGACGAGCTCCCACCTCGCGGATGATCCTCCTTTCCACACCCATTCTCC
JMFF049I13+           CTTCTCTTCTTCGACGAGCTCCCACCTCGCGGATGATCCTCCTTTCCACACCCATTCTCC
rJMFF010B17-          CTTCTCTTCTTCGACGAGCTCCCACCTCGCGGATGATCCTCCTTTCCACACCCATTCTCC
rJMSF039D23-          CTTCTCTTCTTCGACGAGCTCCCACCTCGCGGATGATCCTCCTTTCCACACCCATTCTCC
                      ____________________________________________________________
consensus             CTTCTCTTCTTCGACGAGCTCCCACCTCGCGGATGATCCTCCTTTCCACACCCATTCTCC
 
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JMFF010B17+           ACATCCTTTCCACTGCCTTGGAGGAATCTACCTTTTCGTCCAAGGAAGTCCATGCTCTCT
JMFF049I13+           ACATCCTTTCCACTGCCTTGGAGGAATCTACCTTTTCGTCCAAGGAAGTCCATGCTCTCT
rJMFF010B17-          ACATCCTTTCCACTGCCTTGGAGGAATCTACCTTTTCGTCCAAGGAAGTCCATGCTCTCT
rJMSF039D23-          ACATCCTTTCCACTGCCTTGGAGGAATCTACCTTTTCGTCCAAGGAAGTCCATGCTCTCT
                      ____________________________________________________________
consensus             ACATCCTTTCCACTGCCTTGGAGGAATCTACCTTTTCGTCCAAGGAAGTCCATGCTCTCT
 
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JMFF010B17+           GTCTTGTAAGGCGTGATGGGCAAG-CCCCCCGCTTCCAAGTTACCTCCAGAATGCTCCAG
JMFF049I13+           GTCTTGTAAGGCGTGATGGGCAAG-CCCCCCGCTTCCAAGTTACCTCCAGAATGCTCCAG
rJMFF010B17-          GTCTTGTAAGGCGTGATGGGCAAG-CCCCCCGCTTCCAAGTTACCTCCAGAATGCTCCAG
rJMSF039D23-          GTCTTGTAAGGCGTGATGGGCAAGCCCCCCCGCTTCCAAGTTACCTCCAGAATGCTCCAG
                      ____________________________________________________________
consensus             GTCTTGTAAGGCGTGATGGGCAAG-CCCCCCGCTTCCAAGTTACCTCCAGAATGCTCCAG
 
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JMFF010B17+           GATGGTTTCAGGAGGAGTGTTTGATCCATTGCCGGTGCTAGTCTCTTCTGCTATTTGTGC
JMFF049I13+           GATGGTTTCAGGAGGAGTGTTTGATCCATTGCCGGTGCTAGTCTCTTCTGCTATTTGTGC
rJMFF010B17-          GATGGTTTCAGGAGGAGTGTTTGATCCATTGCCGGTGCTAGTCTCTTCTGCTATTTGTGC
rJMSF039D23-          GATGGTTTCAGGAGGAGTGTTTGATCCATTGCCGGTGCTAGTCTCTTCTGCTATTTGTGC
                      ____________________________________________________________
consensus             GATGGTTTCAGGAGGAGTGTTTGATCCATTGCCGGTGCTAGTCTCTTCTGCTATTTGTGC
 
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JMFF010B17+           ATCTGGAGAATCCTT                                             
JMFF049I13+           ATCTGGAGAATCCTTGTTCTC                                       
rJMFF010B17-          ATCTGGAGAATCCTTGTTCTC                                       
rJMSF039D23-          ATCTGGAGAATCCTTGTTCTCAACATCTATCACATCTGTTGTATGCCGTGTGGAGCTACT
                      ____________________________________________________________
consensus             ATCTGGAGAATCCTTGTTCTCAACATCTATCACATCTGTTGTATGCCGTGTGGAGCTACT
 
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rJMSF039D23-          AAAATTTCGCATGCTGGGCTCCTCCCCTCCCAAACATGGCTTTACTGTCATCATCGNTGC
                      ____________________________________________________________
consensus             AAAATTTCGCATGCTGGGCTCCTCCCCTCCCAAACATGGCTTTACTGTCATCATCGNTGC
 
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rJMSF039D23-          TGCTGCTTTAGGGCTTTTACCCTCGCAGCATAATAGATTCGTAGAGGTGATATTATCAGT
                      ____________________________________________________________
consensus             TGCTGCTTTAGGGCTTTTACCCTCGCAGCATAATAGATTCGTAGAGGTGATATTATCAGT