| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF028N03 | Sequence | 658 | 012705 (5) | ref|XP_009790089.1| | 245 | PREDICTED: uncharacterized protein LOC104237614, partial [Nicotiana sylvestris] | 731 | 012705 (5) | ref|XP_006407772.1| | 2e-71 | hypothetical protein EUTSA_v10020943mg [Eutrema salsugineum] gb|ESQ49225.1| hypo |
| JMSF039C02 | Sequence | 145 | 012705 (5) | gb|KFK38255.1| | 2e-06 | hypothetical protein AALP_AA3G089400 [Arabis alpina] | |||||
| JMSF039D02 | Sequence | 701 | 012705 (5) | ref|XP_009790089.1| | 331 | PREDICTED: uncharacterized protein LOC104237614, partial [Nicotiana sylvestris] | 866 | 012705 (5) | ref|XP_002517815.1| | 2e-84 | conserved hypothetical protein [Ricinus communis] gb|EEF44622.1| conserved hypot |
This contig is upended
. : . : . : . : . : . :
JMSF028N03- GACCGCTC
____________________________________________________________
consensus GACCGCTC
. : . : . : . : . : . :
JMSF028N03- TCTCTCAAACCCCACACTCGTCTTCTTCACCTTGGAACCGAACCTCCATGGCTAGTTTAA
____________________________________________________________
consensus TCTCTCAAACCCCACACTCGTCTTCTTCACCTTGGAACCGAACCTCCATGGCTAGTTTAA
. : . : . : . : . : . :
JMSF028N03- GCTTCCATTGCAGCAGAATCAGGCATCCTTCAGTCCATTCTTTTGAATTCCCATTCCACT
JMSF039D02- ATCCTTCAGTCCATTCTTTTGAATTCCCATTCCACT
____________________________________________________________
consensus GCTTCCATTGCAGCAGAATCAGGCATCCTTCAGTCCATTCTTTTGAATTCCCATTCCACT
. : . : . : . : . : . :
JMSF028N03- TCTTTCCATCTTCAGTCAAAATCAAGCCACTCAAAACCAACTTCAACAATTTGCATTTTC
JMSF039D02- TCTTTCCATCTTCAGTCAAAATCAAGCCACTCAAAACCAACTTCAACAATTTGCATTTTC
____________________________________________________________
consensus TCTTTCCATCTTCAGTCAAAATCAAGCCACTCAAAACCAACTTCAACAATTTGCATTTTC
. : . : . : . : . : . :
JMSF028N03- TTTCTTGTTCGGTTTCTGAAACCTCCATCTCTTCACCCTTGGAAGCTGAAGCTGAAGCTT
JMSF039D02- TTTCTTGTTCGGTTTCTGAAACCTCCATCTCTTCACCCTTGGAAGCTGAAGCTGAAGCTT
____________________________________________________________
consensus TTTCTTGTTCGGTTTCTGAAACCTCCATCTCTTCACCCTTGGAAGCTGAAGCTGAAGCTT
. : . : . : . : . : . :
JMSF028N03- CTGATGAAGAAGAAGAAGAAGAGGAAGATGATGATGACCCCACTGTAGAGCTGAGCTATC
JMSF039D02- CTGATGAAGAAGAAGAAGAAGAGGAAGATGATGATGACCCCACTGTAGAGCTGAGCTATC
____________________________________________________________
consensus CTGATGAAGAAGAAGAAGAAGAGGAAGATGATGATGACCCCACTGTAGAGCTGAGCTATC
. : . : . : . : . : . :
JMSF028N03- TCGACCCGGAAGTTGATCCTCAGAGCATTTCTGAGTGGGAAATGGATTTCTGCTCAAGAC
JMSF039D02- TCGACCCGGAAGTTGATCCTCAGAGCATTTCCGAGTGGGAAATGGATTTCTGCTCAAGAC
____________________________________________________________
consensus TCGACCCGGAAGTTGATCCTCAGAGCATTTCTGAGTGGGAAATGGATTTCTGCTCAAGAC
. : . : . : . : . : . :
JMSF028N03- CCATTCTTGATATCAGAGGAAAAAAGCTATGGGAGCTTGTTGTTTGCGATGATTCTCTGT
JMSF039D02- CCATTCTTGATATCAGAGGAAAAAAGCTATGGGAGCTTGTTGTTTGCGATGATTCTCTGT
____________________________________________________________
consensus CCATTCTTGATATCAGAGGAAAAAAGCTATGGGAGCTTGTTGTTTGCGATGATTCTCTGT
. : . : . : . : . : . :
JMSF028N03- CTTTGCAATATACAAAGTATTTCCCCAATAATGTTATCAATAGTGTCACTCTTAAGGAAG
JMSF039D02- CTTTGCAATATACAAAGTATTTCCCCAATAATGTTATCAATAGTGTCACTCTTAAGGAAG
____________________________________________________________
consensus CTTTGCAATATACAAAGTATTTCCCCAATAATGTTATCAATAGTGTCACTCTTAAGGAAG
. : . : . : . : . : . :
JMSF028N03- CCATAGTGTCCATCTGTGACGATTTGGGCGTGCCTTTACCTAACAAAATTCGCTTCTTTA
JMSF039D02- CCATAGTGTCCATCTGTGACGATTTGGGCGTGCCTTTACCTAACAAAATTCGCTTCTTTA
____________________________________________________________
consensus CCATAGTGTCCATCTGTGACGATTTGGGCGTGCCTTTACCTAACAAAATTCGCTTCTTTA
. : . : . : . : . : . :
JMSF028N03- GATCACAAATGCAGACTATTATCACTAGAGCTTGCAATGAGCTTGGCGTAACACCTATTC
JMSF039D02- GATCACAAATGCAGACTATTATCACTAGAGCTTGCAATGAGCTTGGCGTAACACCTATTC
____________________________________________________________
consensus GATCACAAATGCAGACTATTATCACTAGAGCTTGCAATGAGCTTGGCGTAACACCTATTC
. : . : . : . : . : . :
JMSF028N03- CCAGCAAGCGGTGCTTGTCATTGGTTCTTTGGCTTGAAGAACGCTATGAA
JMSF039D02- CCAGCAAGCGGTGCTTGTCATTGGTTCTTTGGCTTGAAGAACGCTATGAAACGGTTTATA
____________________________________________________________
consensus CCAGCAAGCGGTGCTTGTCATTGGTTCTTTGGCTTGAAGAACGCTATGAAACGGTTTATA
. : . : . : . : . : . :
JMSF039D02- CTCGCCACCCTGGTTTCAACAAAGGATCTAAACGACTGCTTGCTCTTGATAATCCATTTC
rJMSF039D02+ ACTGCTTGCTCTTGATAATCCATTTC
____________________________________________________________
consensus CTCGCCACCCTGGTTTCAACAAAGGATCTAAACGACTGCTTGCTCTTGATAATCCATTTC
. : . : . : . : . : . :
JMSF039D02- CAATGGAGCTTCCAGAGAATTTATATGGAGAAAAATGGGCTTTTGTCCAGTTGCCTTTCT
rJMSF028N03+ AAATGGGCTTTTGTCCAGGTGCCTTTCT
rJMSF039D02+ CAATGGAGCTTCCAGAGAATTTATATGGAGAAAAATGGGCTTTTGTCCAGTTGCCTTTCT
____________________________________________________________
consensus CAATGGAGCTTCCAGAGAATTTATATGGAGAAAAATGGGCTTTTGTCCAGTTGCCTTTCT
. : . : . : . : . : . :
JMSF039D02- CAGC
rJMSF028N03+ CAGCTGTTCAGGAAGAGGTTTCATCTCTGCAGACAAGGTTCATGTTTGGTGCAAGTTTAG
rJMSF039D02+ CAGCTGTTCAGGAAGAGGTTTCATCTCTGCAGACAAGGTTCATGTTTGGTGCAAGTTTAG
____________________________________________________________
consensus CAGCTGTTCAGGAAGAGGTTTCATCTCTGCAGACAAGGTTCATGTTTGGTGCAAGTTTAG
. : . : . : . : . : . :
rJMSF028N03+ ATTTGGACCTTTTGGGGATTGAAATTGGAGAAAAGACGTTAATTCCTGGTCTTGCTGTTG
rJMSF039D02+ ATTTGGACCTTTTGGGGATTGAAATTGGAGAAAAGACGTTAATTCCTGGTCTTGCTGTTG
____________________________________________________________
consensus ATTTGGACCTTTTGGGGATTGAAATTGGAGAAAAGACGTTAATTCCTGGTCTTGCTGTTG
. : . : . : . : . : . :
rJMSF028N03+ CTTCTTCACGTGCACAGCCATTAGCCGCTTGGATGAATGGCTTAGAGGTGTGTTCAATTG
rJMSF039D02+ CTTCTTCACGTGCACAGCCATTAGCCGCTTGGATGAATGGCTTAGAGGTGTGTTCAATTG
____________________________________________________________
consensus CTTCTTCACGTGCACAGCCATTAGCCGCTTGGATGAATGGCTTAGAGGTGTGTTCAATTG
. : . : . : . : . : . :
rJMSF028N03+ AAGCTGATATTGAAAGGGCATGCTTGATTTTATCTGTTGGAATTTCGACTCGATACATTT
rJMSF039D02+ AAGCTGATATTGAAAGGGCATGCTTGATTTTATCTGTTGGAATTTCGACTCGATACATTT
____________________________________________________________
consensus AAGCTGATATTGAAAGGGCATGCTTGATTTTATCTGTTGGAATTTCGACTCGATACATTT
. : . : . : . : . : . :
rJMSF039C02+ GAAGCTGAAGCCTGGGAAGCTGCAA
rJMSF028N03+ ATGCAACCTACAAGAAAACCCCTGTAACTACAAGTGAAGCTGAAGCCTGGGAAGCTGCAA
rJMSF039D02+ ATGCAACCTACAAGAAAACCCCTGTAACTACAAGTGAAGCTGAAGCCTGGGAAGCTGCAA
____________________________________________________________
consensus ATGCAACCTACAAGAAAACCCCTGTAACTACAAGTGAAGCTGAAGCCTGGGAAGCTGCAA
. : . : . : . : . : . :
rJMSF039C02+ AGAAGGCCAGTGGNGGTTTGCANTTCCTTGCTATNCAAGATGATCTAGATTCAGATGNCT
rJMSF028N03+ AGAAGGCCAGTGGAGGTTTGCATTTCCTTGCTATTCAAGATGATCTAGATTCAGATGACT
rJMSF039D02+ AGAAGGCCAGTGGAGGTTTGCATTTCCTTGCTATTCAAGATGATCTAGATTCAGATGACT
____________________________________________________________
consensus AGAAGGCCAGTGGAGGTTTGCATTTCCTTGCTATTCAAGATGATCTAGATTCAGATGACT
. : . : . : . : . : . :
rJMSF039C02+ GTGTTGGATTCTGGCTCCTTTTAGACTTCCCACCTCCTCCNGNATAGATATATC
rJMSF028N03+ GTGTTGGATTCTGGCTCCTTTTAGACTTCCCACCTCCTCCTGTATAGATATATCATGCCA
rJMSF039D02+ GTGTTGGATTCTGGCTCCTTTTAGACTTCCCACCTCCTCCTGTATAGATATATCATGCCA
____________________________________________________________
consensus GTGTTGGATTCTGGCTCCTTTTAGACTTCCCACCTCCTCCTGTATAGATATATCATGCCA
. : . : . : . : . : . :
rJMSF028N03+ GGCCCGCATGGACAACTCAATTGGTTACAGGGGTGAGTGTTCTCTAGGATCGAGTCTCAC
rJMSF039D02+ GGCCCGCATGGACAACTCAATTGGTTACAGGGGTGAGTGTTCTCTAGGATCGAGTCTCAC
____________________________________________________________
consensus GGCCCGCATGGACAACTCAATTGGTTACAGGGGTGAGTGTTCTCTAGGATCGAGTCTCAC
. : . : . : . : . : . :
rJMSF028N03+ CAGCGACAGTGCGAAAGTAACCTCTCAAAGTAAGGGGTGTTTCTTATGCGCAGTAAGCAA
rJMSF039D02+ CAGCGACAGTGCGAAAGTAACCTCTCAAAGTAAGGGGTGTTTCTTATGCGCAGTAAGCAA
____________________________________________________________
consensus CAGCGACAGTGCGAAAGTAACCTCTCAAAGTAAGGGGTGTTTCTTATGCGCAGTAAGCAA
. : . : . : . : . : . :
rJMSF028N03+ GGTCTAGCCTCTGTGTTCAGTTGAGTTACCATGACTTACAGGATTTGAGTATTCACTTAC
rJMSF039D02+ GGTCTAGCCTCTGTGTTCAGTTGAGTTACCATGACTTACAGGATTTGAGTATTCACTTAC
____________________________________________________________
consensus GGTCTAGCCTCTGTGTTCAGTTGAGTTACCATGACTTACAGGATTTGAGTATTCACTTAC
. : . : . : . : . : . :
rJMSF028N03+ ATTCAAACTTTTTTGATTCTGCATTTGATGATGTAAAGAACTGCAAGTTACAATCATGTT
rJMSF039D02+ ATTCAAACTTTTTTGATTCTGCATTTGATGATGTAAAGAACTGCAAGTTACAATCATGTT
____________________________________________________________
consensus ATTCAAACTTTTTTGATTCTGCATTTGATGATGTAAAGAACTGCAAGTTACAATCATGTT
. : . : . : . : . : . :
rJMSF028N03+ GAGCTTAGTGGGAATTAAATGAAGTTTTTGTAAATACT
rJMSF039D02+ GAGCTTAGTGGGAATTAAATGAAGTTTTTGTAAATACTTGGAATTGTTGTTCCAAGAATC
____________________________________________________________
consensus GAGCTTAGTGGGAATTAAATGAAGTTTTTGTAAATACTTGGAATTGTTGTTCCAAGAATC
. : . : . : . : . : . :
rJMSF039D02+ ATAAACTTCTAGAGTTGCAAGTTGCAATGTGGTTTTGGCAGTTTGCATTTTTGCAGAACT
____________________________________________________________
consensus ATAAACTTCTAGAGTTGCAAGTTGCAATGTGGTTTTGGCAGTTTGCATTTTTGCAGAACT