Contig 012705:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028N03Sequence658012705 (5)ref|XP_009790089.1|245PREDICTED: uncharacterized protein LOC104237614, partial [Nicotiana sylvestris]731012705 (5)ref|XP_006407772.1|2e-71hypothetical protein EUTSA_v10020943mg [Eutrema salsugineum] gb|ESQ49225.1| hypo
JMSF039C02Sequence145012705 (5)gb|KFK38255.1|2e-06hypothetical protein AALP_AA3G089400 [Arabis alpina]
JMSF039D02Sequence701012705 (5)ref|XP_009790089.1|331PREDICTED: uncharacterized protein LOC104237614, partial [Nicotiana sylvestris]866012705 (5)ref|XP_002517815.1|2e-84conserved hypothetical protein [Ricinus communis] gb|EEF44622.1| conserved hypot

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF028N03- GACCGCTC
                      ____________________________________________________________
consensus GACCGCTC
 
. : . : . : . : . : . :
JMSF028N03- TCTCTCAAACCCCACACTCGTCTTCTTCACCTTGGAACCGAACCTCCATGGCTAGTTTAA
                      ____________________________________________________________
consensus TCTCTCAAACCCCACACTCGTCTTCTTCACCTTGGAACCGAACCTCCATGGCTAGTTTAA
 
. : . : . : . : . : . :
JMSF028N03- GCTTCCATTGCAGCAGAATCAGGCATCCTTCAGTCCATTCTTTTGAATTCCCATTCCACT
JMSF039D02- ATCCTTCAGTCCATTCTTTTGAATTCCCATTCCACT
                      ____________________________________________________________
consensus GCTTCCATTGCAGCAGAATCAGGCATCCTTCAGTCCATTCTTTTGAATTCCCATTCCACT
 
. : . : . : . : . : . :
JMSF028N03- TCTTTCCATCTTCAGTCAAAATCAAGCCACTCAAAACCAACTTCAACAATTTGCATTTTC
JMSF039D02- TCTTTCCATCTTCAGTCAAAATCAAGCCACTCAAAACCAACTTCAACAATTTGCATTTTC
                      ____________________________________________________________
consensus TCTTTCCATCTTCAGTCAAAATCAAGCCACTCAAAACCAACTTCAACAATTTGCATTTTC
 
. : . : . : . : . : . :
JMSF028N03- TTTCTTGTTCGGTTTCTGAAACCTCCATCTCTTCACCCTTGGAAGCTGAAGCTGAAGCTT
JMSF039D02- TTTCTTGTTCGGTTTCTGAAACCTCCATCTCTTCACCCTTGGAAGCTGAAGCTGAAGCTT
                      ____________________________________________________________
consensus TTTCTTGTTCGGTTTCTGAAACCTCCATCTCTTCACCCTTGGAAGCTGAAGCTGAAGCTT
 
. : . : . : . : . : . :
JMSF028N03- CTGATGAAGAAGAAGAAGAAGAGGAAGATGATGATGACCCCACTGTAGAGCTGAGCTATC
JMSF039D02- CTGATGAAGAAGAAGAAGAAGAGGAAGATGATGATGACCCCACTGTAGAGCTGAGCTATC
                      ____________________________________________________________
consensus CTGATGAAGAAGAAGAAGAAGAGGAAGATGATGATGACCCCACTGTAGAGCTGAGCTATC
 
. : . : . : . : . : . :
JMSF028N03- TCGACCCGGAAGTTGATCCTCAGAGCATTTCTGAGTGGGAAATGGATTTCTGCTCAAGAC
JMSF039D02- TCGACCCGGAAGTTGATCCTCAGAGCATTTCCGAGTGGGAAATGGATTTCTGCTCAAGAC
                      ____________________________________________________________
consensus TCGACCCGGAAGTTGATCCTCAGAGCATTTCTGAGTGGGAAATGGATTTCTGCTCAAGAC
 
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JMSF028N03- CCATTCTTGATATCAGAGGAAAAAAGCTATGGGAGCTTGTTGTTTGCGATGATTCTCTGT
JMSF039D02- CCATTCTTGATATCAGAGGAAAAAAGCTATGGGAGCTTGTTGTTTGCGATGATTCTCTGT
                      ____________________________________________________________
consensus CCATTCTTGATATCAGAGGAAAAAAGCTATGGGAGCTTGTTGTTTGCGATGATTCTCTGT
 
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JMSF028N03- CTTTGCAATATACAAAGTATTTCCCCAATAATGTTATCAATAGTGTCACTCTTAAGGAAG
JMSF039D02- CTTTGCAATATACAAAGTATTTCCCCAATAATGTTATCAATAGTGTCACTCTTAAGGAAG
                      ____________________________________________________________
consensus CTTTGCAATATACAAAGTATTTCCCCAATAATGTTATCAATAGTGTCACTCTTAAGGAAG
 
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JMSF028N03- CCATAGTGTCCATCTGTGACGATTTGGGCGTGCCTTTACCTAACAAAATTCGCTTCTTTA
JMSF039D02- CCATAGTGTCCATCTGTGACGATTTGGGCGTGCCTTTACCTAACAAAATTCGCTTCTTTA
                      ____________________________________________________________
consensus CCATAGTGTCCATCTGTGACGATTTGGGCGTGCCTTTACCTAACAAAATTCGCTTCTTTA
 
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JMSF028N03- GATCACAAATGCAGACTATTATCACTAGAGCTTGCAATGAGCTTGGCGTAACACCTATTC
JMSF039D02- GATCACAAATGCAGACTATTATCACTAGAGCTTGCAATGAGCTTGGCGTAACACCTATTC
                      ____________________________________________________________
consensus GATCACAAATGCAGACTATTATCACTAGAGCTTGCAATGAGCTTGGCGTAACACCTATTC
 
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JMSF028N03- CCAGCAAGCGGTGCTTGTCATTGGTTCTTTGGCTTGAAGAACGCTATGAA
JMSF039D02- CCAGCAAGCGGTGCTTGTCATTGGTTCTTTGGCTTGAAGAACGCTATGAAACGGTTTATA
                      ____________________________________________________________
consensus CCAGCAAGCGGTGCTTGTCATTGGTTCTTTGGCTTGAAGAACGCTATGAAACGGTTTATA
 
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JMSF039D02- CTCGCCACCCTGGTTTCAACAAAGGATCTAAACGACTGCTTGCTCTTGATAATCCATTTC
rJMSF039D02+ ACTGCTTGCTCTTGATAATCCATTTC
                      ____________________________________________________________
consensus CTCGCCACCCTGGTTTCAACAAAGGATCTAAACGACTGCTTGCTCTTGATAATCCATTTC
 
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JMSF039D02- CAATGGAGCTTCCAGAGAATTTATATGGAGAAAAATGGGCTTTTGTCCAGTTGCCTTTCT
rJMSF028N03+ AAATGGGCTTTTGTCCAGGTGCCTTTCT
rJMSF039D02+ CAATGGAGCTTCCAGAGAATTTATATGGAGAAAAATGGGCTTTTGTCCAGTTGCCTTTCT
                      ____________________________________________________________
consensus CAATGGAGCTTCCAGAGAATTTATATGGAGAAAAATGGGCTTTTGTCCAGTTGCCTTTCT
 
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JMSF039D02- CAGC
rJMSF028N03+ CAGCTGTTCAGGAAGAGGTTTCATCTCTGCAGACAAGGTTCATGTTTGGTGCAAGTTTAG
rJMSF039D02+ CAGCTGTTCAGGAAGAGGTTTCATCTCTGCAGACAAGGTTCATGTTTGGTGCAAGTTTAG
                      ____________________________________________________________
consensus CAGCTGTTCAGGAAGAGGTTTCATCTCTGCAGACAAGGTTCATGTTTGGTGCAAGTTTAG
 
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rJMSF028N03+ ATTTGGACCTTTTGGGGATTGAAATTGGAGAAAAGACGTTAATTCCTGGTCTTGCTGTTG
rJMSF039D02+ ATTTGGACCTTTTGGGGATTGAAATTGGAGAAAAGACGTTAATTCCTGGTCTTGCTGTTG
                      ____________________________________________________________
consensus ATTTGGACCTTTTGGGGATTGAAATTGGAGAAAAGACGTTAATTCCTGGTCTTGCTGTTG
 
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rJMSF028N03+ CTTCTTCACGTGCACAGCCATTAGCCGCTTGGATGAATGGCTTAGAGGTGTGTTCAATTG
rJMSF039D02+ CTTCTTCACGTGCACAGCCATTAGCCGCTTGGATGAATGGCTTAGAGGTGTGTTCAATTG
                      ____________________________________________________________
consensus CTTCTTCACGTGCACAGCCATTAGCCGCTTGGATGAATGGCTTAGAGGTGTGTTCAATTG
 
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rJMSF028N03+ AAGCTGATATTGAAAGGGCATGCTTGATTTTATCTGTTGGAATTTCGACTCGATACATTT
rJMSF039D02+ AAGCTGATATTGAAAGGGCATGCTTGATTTTATCTGTTGGAATTTCGACTCGATACATTT
                      ____________________________________________________________
consensus AAGCTGATATTGAAAGGGCATGCTTGATTTTATCTGTTGGAATTTCGACTCGATACATTT
 
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rJMSF039C02+ GAAGCTGAAGCCTGGGAAGCTGCAA
rJMSF028N03+ ATGCAACCTACAAGAAAACCCCTGTAACTACAAGTGAAGCTGAAGCCTGGGAAGCTGCAA
rJMSF039D02+ ATGCAACCTACAAGAAAACCCCTGTAACTACAAGTGAAGCTGAAGCCTGGGAAGCTGCAA
                      ____________________________________________________________
consensus ATGCAACCTACAAGAAAACCCCTGTAACTACAAGTGAAGCTGAAGCCTGGGAAGCTGCAA
 
. : . : . : . : . : . :
rJMSF039C02+ AGAAGGCCAGTGGNGGTTTGCANTTCCTTGCTATNCAAGATGATCTAGATTCAGATGNCT
rJMSF028N03+ AGAAGGCCAGTGGAGGTTTGCATTTCCTTGCTATTCAAGATGATCTAGATTCAGATGACT
rJMSF039D02+ AGAAGGCCAGTGGAGGTTTGCATTTCCTTGCTATTCAAGATGATCTAGATTCAGATGACT
                      ____________________________________________________________
consensus AGAAGGCCAGTGGAGGTTTGCATTTCCTTGCTATTCAAGATGATCTAGATTCAGATGACT
 
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rJMSF039C02+ GTGTTGGATTCTGGCTCCTTTTAGACTTCCCACCTCCTCCNGNATAGATATATC
rJMSF028N03+ GTGTTGGATTCTGGCTCCTTTTAGACTTCCCACCTCCTCCTGTATAGATATATCATGCCA
rJMSF039D02+ GTGTTGGATTCTGGCTCCTTTTAGACTTCCCACCTCCTCCTGTATAGATATATCATGCCA
                      ____________________________________________________________
consensus GTGTTGGATTCTGGCTCCTTTTAGACTTCCCACCTCCTCCTGTATAGATATATCATGCCA
 
. : . : . : . : . : . :
rJMSF028N03+ GGCCCGCATGGACAACTCAATTGGTTACAGGGGTGAGTGTTCTCTAGGATCGAGTCTCAC
rJMSF039D02+ GGCCCGCATGGACAACTCAATTGGTTACAGGGGTGAGTGTTCTCTAGGATCGAGTCTCAC
                      ____________________________________________________________
consensus GGCCCGCATGGACAACTCAATTGGTTACAGGGGTGAGTGTTCTCTAGGATCGAGTCTCAC
 
. : . : . : . : . : . :
rJMSF028N03+ CAGCGACAGTGCGAAAGTAACCTCTCAAAGTAAGGGGTGTTTCTTATGCGCAGTAAGCAA
rJMSF039D02+ CAGCGACAGTGCGAAAGTAACCTCTCAAAGTAAGGGGTGTTTCTTATGCGCAGTAAGCAA
                      ____________________________________________________________
consensus CAGCGACAGTGCGAAAGTAACCTCTCAAAGTAAGGGGTGTTTCTTATGCGCAGTAAGCAA
 
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rJMSF028N03+ GGTCTAGCCTCTGTGTTCAGTTGAGTTACCATGACTTACAGGATTTGAGTATTCACTTAC
rJMSF039D02+ GGTCTAGCCTCTGTGTTCAGTTGAGTTACCATGACTTACAGGATTTGAGTATTCACTTAC
                      ____________________________________________________________
consensus GGTCTAGCCTCTGTGTTCAGTTGAGTTACCATGACTTACAGGATTTGAGTATTCACTTAC
 
. : . : . : . : . : . :
rJMSF028N03+ ATTCAAACTTTTTTGATTCTGCATTTGATGATGTAAAGAACTGCAAGTTACAATCATGTT
rJMSF039D02+ ATTCAAACTTTTTTGATTCTGCATTTGATGATGTAAAGAACTGCAAGTTACAATCATGTT
                      ____________________________________________________________
consensus ATTCAAACTTTTTTGATTCTGCATTTGATGATGTAAAGAACTGCAAGTTACAATCATGTT
 
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rJMSF028N03+ GAGCTTAGTGGGAATTAAATGAAGTTTTTGTAAATACT
rJMSF039D02+ GAGCTTAGTGGGAATTAAATGAAGTTTTTGTAAATACTTGGAATTGTTGTTCCAAGAATC
                      ____________________________________________________________
consensus GAGCTTAGTGGGAATTAAATGAAGTTTTTGTAAATACTTGGAATTGTTGTTCCAAGAATC
 
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rJMSF039D02+ ATAAACTTCTAGAGTTGCAAGTTGCAATGTGGTTTTGGCAGTTTGCATTTTTGCAGAACT
                      ____________________________________________________________
consensus ATAAACTTCTAGAGTTGCAAGTTGCAATGTGGTTTTGGCAGTTTGCATTTTTGCAGAACT