Contig 012702:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP005G02Sequence211012702 (4)gb|KHG12054.1|3e-24Nudix hydrolase 19, chloroplastic -like protein [Gossypium arboreum]
JMCP018H01Sequence214012702 (4)gb|KHG12054.1|3e-24Nudix hydrolase 19, chloroplastic -like protein [Gossypium arboreum]
JMSF038M09Sequence681006757 (2)ref|XP_006365726.1|2e-79PREDICTED: nudix hydrolase 19, chloroplastic-like isoform X1 [Solanum tuberosum950012702 (4)ref|XP_011084091.1|2e-105PREDICTED: nudix hydrolase 19, chloroplastic [Sesamum indicum]
JMSF052G06Sequence704006757 (2)ref|XP_006365726.1|4e-85PREDICTED: nudix hydrolase 19, chloroplastic-like isoform X1 [Solanum tuberosum783012702 (4)ref|XP_011084091.1|1e-75PREDICTED: nudix hydrolase 19, chloroplastic [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038M09+ GTGNTGATNCCGGTTGTCATCATGTTAGTCATAGATAAAGAAAATGACCG
                      ____________________________________________________________
consensus GTGNTGATNCCGGTTGTCATCATGTTAGTCATAGATAAAGAAAATGACCG
 
. : . : . : . : . : . :
rJMSF038M09+ TGCACTATTGAGTAGGCAGTCAAGATTTGTGCCACGTATGTGGAGTTGCCTAGCTGGTTT
                      ____________________________________________________________
consensus TGCACTATTGAGTAGGCAGTCAAGATTTGTGCCACGTATGTGGAGTTGCCTAGCTGGTTT
 
. : . : . : . : . : . :
rJMSF052G06+ AGGAGAAAGCTTAGAAGAGGCAGTGAGAAGAGAAACAAGGGAGGAAACTGG
rJMSF038M09+ TATGGAGCCAGGAGAAAGCTTAGAAGAGGCAGTGAGAAGAGAAACAAGGGAGGAAACTGG
                      ____________________________________________________________
consensus TATGGAGCCAGGAGAAAGCTTAGAAGAGGCAGTGAGAAGAGAAACAAGGGAGGAAACTGG
 
. : . : . : . : . : . :
rJMSF052G06+ TATTGAAGTCGGTGAAGTAGTTTATCATAGTTCTCAACCTTGGCCAGTTGGACCCAGTAG
rJMSF038M09+ TATTGAAGTCGGTGAAGTAGTTTATCATAGTTCTCAACCTTGGCCAGTTGGACCCAGTAG
                      ____________________________________________________________
consensus TATTGAAGTCGGTGAAGTAGTTTATCATAGTTCTCAACCTTGGCCAGTTGGACCCAGTAG
 
. : . : . : . : . : . :
rJMSF052G06+ TATGCCATGCCAGCTAATGGTAGGGTTCTTTGCATATGCTAAATCATTCGAAATTGAAGT
rJMSF038M09+ TATGCCATGCCAGCTAATGGTAGGGTTCTTTGCATATGCTAAATCATTCGAAATTGAAGT
                      ____________________________________________________________
consensus TATGCCATGCCAGCTAATGGTAGGGTTCTTTGCATATGCTAAATCATTCGAAATTGAAGT
 
. : . : . : . : . : . :
rJMCP005G02+ AGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAAGGCCCT
rJMCP018H01+ AGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAAGGCTCT
rJMSF052G06+ GGATAAGGAAGAATTGGAAGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAAGGCTCT
rJMSF038M09+ GGATAAGGAAGAATTGGAAGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAAGGCTCT
                      ____________________________________________________________
consensus GGATAAGGAAGAATTGGAAGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAAGGCTCT
 
. : . : . : . : . : . :
rJMCP005G02+ CACTTTGGCCGAGTACCATAAGGCACAAAAGACAACCGCCGCTAAGGTAGACCAAATGTG
rJMCP018H01+ CACTTTGGCCGAGTACCATAAGGCACAAAAGACAACCGCCGCTAAAGTAGACCAAATGTG
rJMSF052G06+ CACTTTGGCCGAGTACCATAAGGCACAAAAGACAACCGCCGCTAAAGTAGACCAAATGTG
rJMSF038M09+ CACTTTGGCCGAGTACCATAAGGCACAAAAGACAACCGCCGCTAAAGTAGACCAAATGTG
                      ____________________________________________________________
consensus CACTTTGGCCGAGTACCATAAGGCACAAAAGACAACCGCCGCTAAAGTAGACCAAATGTG
 
. : . : . : . : . : . :
rJMCP005G02+ CAAAGGCGTTGAGAAAGAGCAGAACTTAGCCACAGCCTATAATGTCGATAGCGGGGAGCT
rJMCP018H01+ CAAAGGCGTTGAGAAAGAGCAGAACTTAGCCACAGCCTATAATGTCGATAGCGGGGAGCT
rJMSF052G06+ CAAAGGCGTTGAGAAAGAGCAGAACTTAGCCACAGCCTATAATGTCGATAGCGGGGAGCT
rJMSF038M09+ CAAAGGCGTTGAGAAAGAGCAGAACTTAGCCACAGCCTATAATGTCGATAGCGGGGAGCT
                      ____________________________________________________________
consensus CAAAGGCGTTGAGAAAGAGCAGAACTTAGCCACAGCCTATAATGTCGATAGCGGGGAGCT
 
. : . : . : . : . : . :
rJMCP005G02+ TGCTCCTATGTTTGTC
rJMCP018H01+ TGCTCCTATGTTTGTC
rJMSF052G06+ TGCTCCTATGTTTGTCCCCGGCCCCTATGCAATCGCCCATCATCTCATTTNTTCGTGGGC
rJMSF038M09+ TGCTCCTATGTTTGTCCCCGGCCCCTATGCAATCGCCCATCATCTCATTTCTTCGTGGGC
                      ____________________________________________________________
consensus TGCTCCTATGTTTGTCCCCGGCCCCTATGCAATCGCCCATCATCTCATTTCTTCGTGGGC
 
. : . : . : . : . : . :
rJMSF052G06+ TAATCAGGTTGGAATAAATAATGGCAACGAAACNCAATCAAAACTGCCTGCTGCTTCGCT
rJMSF038M09+ TAATCAGGTTGGAATAAATAATGGCAACGAAACACAATCAAAACTGCCTGCTGCTTCGCT
                      ____________________________________________________________
consensus TAATCAGGTTGGAATAAATAATGGCAACGAAACACAATCAAAACTGCCTGCTGCTTCGCT
 
. : . : . : . : . : . :
rJMSF052G06+ TCCAAAGTTGTAGCCCATTTTTATTCTTAAACTCCTCACCGCTGCTTCCAAAATCAGTTG
rJMSF038M09+ TCCAAAGTTGTAGCCCATTTTTATTCTTAAACTCCTCACCGCTGCTTCCAAAATCAGTTG
                      ____________________________________________________________
consensus TCCAAAGTTGTAGCCCATTTTTATTCTTAAACTCCTCACCGCTGCTTCCAAAATCAGTTG
 
. : . : . : . : . : . :
rJMSF052G06+ CTCCATAAACGTAGGAACCCAGCAGACGAGGAAANCGTGGGTGGCATCATTGCTGTGGGG
rJMSF038M09+ CTCCATAAACGTAGGAACCCAGCAGACGAGGAAAACGTGGGTGGCATCATTGCTGTGGGG
                      ____________________________________________________________
consensus CTCCATAAACGTAGGAACCCAGCAGACGAGGAAAACGTGGGTGGCATCATTGCTGTGGGG
 
. : . : . : . : . : . :
rJMSF052G06+ AAGTAAGCTCAATGCCCTTGGGGTTTCTCTTGCTTTACATCAATGTATTTTCATCTNTCT
rJMSF038M09+ AAGTAAGCTCAATGCCCTTGGGGTTTCTCTTGCTTTACATCAATGTATTTTCATCTTTCT
                      ____________________________________________________________
consensus AAGTAAGCTCAATGCCCTTGGGGTTTCTCTTGCTTTACATCAATGTATTTTCATCTTTCT
 
. : . : . : . : . : . :
rJMSF052G06+ GGTGATGTGCAATATCCAATTCATATTCTTTGCTGTTTAAAATGTAGTAATAGAATTTTA
rJMSF038M09+ GGTGATGTGCAATATCCAATTCATATTCTTTGCTGTTTAAAATGTAGTAATAGAATTTTA
                      ____________________________________________________________
consensus GGTGATGTGCAATATCCAATTCATATTCTTTGCTGTTTAAAATGTAGTAATAGAATTTTA
 
. : . : . : . : . : . :
rJMSF052G06+ TATCTGGTGTGAAATTTGTGTTGCTCCAATGGAGGAGCAACAGATTTGAGAGACCTTTTC
rJMSF038M09+ TATCTGGTGTGAAATTTGTGTTGCTCCAATGGAGGAGCAACAGATTTGAGAGACCTTTTC
                      ____________________________________________________________
consensus TATCTGGTGTGAAATTTGTGTTGCTCCAATGGAGGAGCAACAGATTTGAGAGACCTTTTC
 
. : . : . : . : . : . :
rJMSF052G06+ ATA
rJMSF038M09+ ATACAGGGTTGTACTGAAATTTGAGTTTGAGATGACTTTTGTATTAAAAATAAGAAAAAA
                      ____________________________________________________________
consensus ATACAGGGTTGTACTGAAATTTGAGTTTGAGATGACTTTTGTATTAAAAATAAGAAAAAA