Contig 012702:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP005G02Sequence211012702 (4)gb|KHG12054.1|3e-24Nudix hydrolase 19, chloroplastic -like protein [Gossypium arboreum]
JMCP018H01Sequence214012702 (4)gb|KHG12054.1|3e-24Nudix hydrolase 19, chloroplastic -like protein [Gossypium arboreum]
JMSF038M09Sequence681006757 (2)ref|XP_006365726.1|2e-79PREDICTED: nudix hydrolase 19, chloroplastic-like isoform X1 [Solanum tuberosum950012702 (4)ref|XP_011084091.1|2e-105PREDICTED: nudix hydrolase 19, chloroplastic [Sesamum indicum]
JMSF052G06Sequence704006757 (2)ref|XP_006365726.1|4e-85PREDICTED: nudix hydrolase 19, chloroplastic-like isoform X1 [Solanum tuberosum783012702 (4)ref|XP_011084091.1|1e-75PREDICTED: nudix hydrolase 19, chloroplastic [Sesamum indicum]

Alignment

This contig is upended


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rJMSF038M09+                    GTGNTGATNCCGGTTGTCATCATGTTAGTCATAGATAAAGAAAATGACCG
                      ____________________________________________________________
consensus                       GTGNTGATNCCGGTTGTCATCATGTTAGTCATAGATAAAGAAAATGACCG
 
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rJMSF038M09+          TGCACTATTGAGTAGGCAGTCAAGATTTGTGCCACGTATGTGGAGTTGCCTAGCTGGTTT
                      ____________________________________________________________
consensus             TGCACTATTGAGTAGGCAGTCAAGATTTGTGCCACGTATGTGGAGTTGCCTAGCTGGTTT
 
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rJMSF052G06+                   AGGAGAAAGCTTAGAAGAGGCAGTGAGAAGAGAAACAAGGGAGGAAACTGG
rJMSF038M09+          TATGGAGCCAGGAGAAAGCTTAGAAGAGGCAGTGAGAAGAGAAACAAGGGAGGAAACTGG
                      ____________________________________________________________
consensus             TATGGAGCCAGGAGAAAGCTTAGAAGAGGCAGTGAGAAGAGAAACAAGGGAGGAAACTGG
 
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rJMSF052G06+          TATTGAAGTCGGTGAAGTAGTTTATCATAGTTCTCAACCTTGGCCAGTTGGACCCAGTAG
rJMSF038M09+          TATTGAAGTCGGTGAAGTAGTTTATCATAGTTCTCAACCTTGGCCAGTTGGACCCAGTAG
                      ____________________________________________________________
consensus             TATTGAAGTCGGTGAAGTAGTTTATCATAGTTCTCAACCTTGGCCAGTTGGACCCAGTAG
 
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rJMSF052G06+          TATGCCATGCCAGCTAATGGTAGGGTTCTTTGCATATGCTAAATCATTCGAAATTGAAGT
rJMSF038M09+          TATGCCATGCCAGCTAATGGTAGGGTTCTTTGCATATGCTAAATCATTCGAAATTGAAGT
                      ____________________________________________________________
consensus             TATGCCATGCCAGCTAATGGTAGGGTTCTTTGCATATGCTAAATCATTCGAAATTGAAGT
 
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rJMCP005G02+                            AGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAAGGCCCT
rJMCP018H01+                            AGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAAGGCTCT
rJMSF052G06+          GGATAAGGAAGAATTGGAAGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAAGGCTCT
rJMSF038M09+          GGATAAGGAAGAATTGGAAGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAAGGCTCT
                      ____________________________________________________________
consensus             GGATAAGGAAGAATTGGAAGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAAGGCTCT
 
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rJMCP005G02+          CACTTTGGCCGAGTACCATAAGGCACAAAAGACAACCGCCGCTAAGGTAGACCAAATGTG
rJMCP018H01+          CACTTTGGCCGAGTACCATAAGGCACAAAAGACAACCGCCGCTAAAGTAGACCAAATGTG
rJMSF052G06+          CACTTTGGCCGAGTACCATAAGGCACAAAAGACAACCGCCGCTAAAGTAGACCAAATGTG
rJMSF038M09+          CACTTTGGCCGAGTACCATAAGGCACAAAAGACAACCGCCGCTAAAGTAGACCAAATGTG
                      ____________________________________________________________
consensus             CACTTTGGCCGAGTACCATAAGGCACAAAAGACAACCGCCGCTAAAGTAGACCAAATGTG
 
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rJMCP005G02+          CAAAGGCGTTGAGAAAGAGCAGAACTTAGCCACAGCCTATAATGTCGATAGCGGGGAGCT
rJMCP018H01+          CAAAGGCGTTGAGAAAGAGCAGAACTTAGCCACAGCCTATAATGTCGATAGCGGGGAGCT
rJMSF052G06+          CAAAGGCGTTGAGAAAGAGCAGAACTTAGCCACAGCCTATAATGTCGATAGCGGGGAGCT
rJMSF038M09+          CAAAGGCGTTGAGAAAGAGCAGAACTTAGCCACAGCCTATAATGTCGATAGCGGGGAGCT
                      ____________________________________________________________
consensus             CAAAGGCGTTGAGAAAGAGCAGAACTTAGCCACAGCCTATAATGTCGATAGCGGGGAGCT
 
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rJMCP005G02+          TGCTCCTATGTTTGTC                                            
rJMCP018H01+          TGCTCCTATGTTTGTC                                            
rJMSF052G06+          TGCTCCTATGTTTGTCCCCGGCCCCTATGCAATCGCCCATCATCTCATTTNTTCGTGGGC
rJMSF038M09+          TGCTCCTATGTTTGTCCCCGGCCCCTATGCAATCGCCCATCATCTCATTTCTTCGTGGGC
                      ____________________________________________________________
consensus             TGCTCCTATGTTTGTCCCCGGCCCCTATGCAATCGCCCATCATCTCATTTCTTCGTGGGC
 
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rJMSF052G06+          TAATCAGGTTGGAATAAATAATGGCAACGAAACNCAATCAAAACTGCCTGCTGCTTCGCT
rJMSF038M09+          TAATCAGGTTGGAATAAATAATGGCAACGAAACACAATCAAAACTGCCTGCTGCTTCGCT
                      ____________________________________________________________
consensus             TAATCAGGTTGGAATAAATAATGGCAACGAAACACAATCAAAACTGCCTGCTGCTTCGCT
 
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rJMSF052G06+          TCCAAAGTTGTAGCCCATTTTTATTCTTAAACTCCTCACCGCTGCTTCCAAAATCAGTTG
rJMSF038M09+          TCCAAAGTTGTAGCCCATTTTTATTCTTAAACTCCTCACCGCTGCTTCCAAAATCAGTTG
                      ____________________________________________________________
consensus             TCCAAAGTTGTAGCCCATTTTTATTCTTAAACTCCTCACCGCTGCTTCCAAAATCAGTTG
 
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rJMSF052G06+          CTCCATAAACGTAGGAACCCAGCAGACGAGGAAANCGTGGGTGGCATCATTGCTGTGGGG
rJMSF038M09+          CTCCATAAACGTAGGAACCCAGCAGACGAGGAAAACGTGGGTGGCATCATTGCTGTGGGG
                      ____________________________________________________________
consensus             CTCCATAAACGTAGGAACCCAGCAGACGAGGAAAACGTGGGTGGCATCATTGCTGTGGGG
 
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rJMSF052G06+          AAGTAAGCTCAATGCCCTTGGGGTTTCTCTTGCTTTACATCAATGTATTTTCATCTNTCT
rJMSF038M09+          AAGTAAGCTCAATGCCCTTGGGGTTTCTCTTGCTTTACATCAATGTATTTTCATCTTTCT
                      ____________________________________________________________
consensus             AAGTAAGCTCAATGCCCTTGGGGTTTCTCTTGCTTTACATCAATGTATTTTCATCTTTCT
 
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rJMSF052G06+          GGTGATGTGCAATATCCAATTCATATTCTTTGCTGTTTAAAATGTAGTAATAGAATTTTA
rJMSF038M09+          GGTGATGTGCAATATCCAATTCATATTCTTTGCTGTTTAAAATGTAGTAATAGAATTTTA
                      ____________________________________________________________
consensus             GGTGATGTGCAATATCCAATTCATATTCTTTGCTGTTTAAAATGTAGTAATAGAATTTTA
 
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rJMSF052G06+          TATCTGGTGTGAAATTTGTGTTGCTCCAATGGAGGAGCAACAGATTTGAGAGACCTTTTC
rJMSF038M09+          TATCTGGTGTGAAATTTGTGTTGCTCCAATGGAGGAGCAACAGATTTGAGAGACCTTTTC
                      ____________________________________________________________
consensus             TATCTGGTGTGAAATTTGTGTTGCTCCAATGGAGGAGCAACAGATTTGAGAGACCTTTTC
 
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rJMSF052G06+          ATA                                                         
rJMSF038M09+          ATACAGGGTTGTACTGAAATTTGAGTTTGAGATGACTTTTGTATTAAAAATAAGAAAAAA
                      ____________________________________________________________
consensus             ATACAGGGTTGTACTGAAATTTGAGTTTGAGATGACTTTTGTATTAAAAATAAGAAAAAA