Contig 012700:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026L18Sequence464002400 (9)ref|XP_006344890.1|175PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum]695012700 (4)ref|XP_006344890.1|308PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum]
JMSF034N07Sequence661012700 (4)ref|XP_006344890.1|274PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum]699012700 (4)ref|XP_006344890.1|315PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum]
JMSF038I12Sequence739013280 (2)emb|CBI25777.3|3e-13unnamed protein product [Vitis vinifera]798012700 (4)ref|XP_006344890.1|315PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF034N07-                       GGACTAGCGTGTGATCGAGCTATCAACAAGTGGAAGCCCCCAAAGATC
rJMSF038I12+                                                        AGCCCCCAAAGATC
                      ____________________________________________________________
consensus                         GGACTAGCGTGTGATCGAGCTATCAACAAGTGGAAGCCCCCAAAGATC
 
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JMSF034N07-           GCATCTTTTTCTCTTCTCTCTCAAGATTTTCTTGGTCATCCTTCTGGAATCGATTCACGG
rJMSF034N07+                       TTCTCTCTCAAGATTTTCTTGGTCATCCTTCTGGAATCGATTCACGG
rJMSF038I12+          GCATCTTTTTCTCTTCTCTCTCAAGATTTTCTTGGTCATCCTTCTGGAATCGATTCACGG
                      ____________________________________________________________
consensus             GCATCTTTTTCTCTTCTCTCTCAAGATTTTCTTGGTCATCCTTCTGGAATCGATTCACGG
 
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JMSF034N07-           GATGGCCATATCCAATCTTTTATCTACACCCCAACTCTTCTCTCACAGACCCAGCATAAC
rJMSF034N07+          GATGGCCATATCCAATCTTTTATCTACACCCCAACTCTTCTCTCACAGACCCAGCATAAC
rJMFF026L18+                               ATCTACACCCCAACTCTTCTCTCACAGACCCAGCATAAC
rJMSF038I12+          GATGGCCATATCCAATCTTTTATCTACACCCCAACTCTTCTCTCACAGACCCAGCATAAC
                      ____________________________________________________________
consensus             GATGGCCATATCCAATCTTTTATCTACACCCCAACTCTTCTCTCACAGACCCAGCATAAC
 
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JMSF034N07-           TCCCCTCCACCTGCAACACTCACCGTCTCTGCTAAGAAAACCCGCCGGAGCTCCCAGACG
rJMSF034N07+          TCCCCTCCACCTGCAACACTCACCGTCTCTGCTAAGAAAACCCGCCGGAGCTCCCAGACG
rJMFF026L18+          TCCCCTCCACCTGCAACACTCACCGTCTCTGCTAAGAAAACCCGCCGGAGCTCCCAGACG
rJMSF038I12+          TCCCCTCCACCTGCAACACTCACCGTCTCTGCTAAGAAAACCCGCCGGAGCTCCCAGACG
                      ____________________________________________________________
consensus             TCCCCTCCACCTGCAACACTCACCGTCTCTGCTAAGAAAACCCGCCGGAGCTCCCAGACG
 
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JMSF034N07-           CCTCCTAGTCACCGTTCAATCAAAGGGCAGCAGCACAGCGGATGGCCCTGACCGTTTAAT
rJMSF034N07+          CCTCCTAGTCACCGTTCAATCAAAGGGCAGCAGCACAGCGGATGGCCCTGACCGTTTAAT
rJMFF026L18+          CCTCCTAGTCACCGTTCAATCAAAGGGCAGCAGCACAGCGGATGGCCCTGACCGTTTAAT
rJMSF038I12+          CCTCCTAGTCACCGTTCAATCAAAGGGCAGCAGCACAGCGGATGGCCCTGACCGTTTAAT
                      ____________________________________________________________
consensus             CCTCCTAGTCACCGTTCAATCAAAGGGCAGCAGCACAGCGGATGGCCCTGACCGTTTAAT
 
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JMSF034N07-           CTCTGCCATTGCTTACTTCTACCCTTTCTTCGACGGCGTTCAGTACGGCAAATACGTCAT
rJMSF034N07+          CTCTGCCATTGCTTACTTCTACCCTTTCTTCGACGGCGTTCAGTACGGCAAATACGTCAT
rJMFF026L18+          CTCTGCCATTGCTTACTTCTACCCTTTCTTCGACGGCGTTCAGTACGGCAAATACGTCAT
rJMSF038I12+          CTCTGCCATTGCTTACTTCTACCCTTTCTTCGACGGCGTTCAGTACGGCAAATACGTCAT
                      ____________________________________________________________
consensus             CTCTGCCATTGCTTACTTCTACCCTTTCTTCGACGGCGTTCAGTACGGCAAATACGTCAT
 
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JMSF034N07-           CACGCAGTTCACTCCGGTCCAAGCTCTGATTCAGCCCTTAGTTCCGGCTATACGGGTCTT
rJMSF034N07+          CACGCAGTTCACTCCGGTCCAAGCTCTGATTCAGCCCTTAGTTCCGGCTATACGGGTCTT
rJMFF026L18+          CACGCAGTTCACTCCGGTCCAAGCTCTGATTCAGCCCTTAGTTCCGGCTATACGGGTCTT
rJMSF038I12+          CACGCAGTTCACTCCGGTCCAAGCTCTGATTCAGCCCTTAGTTCCGGCTATACGGGTCTT
                      ____________________________________________________________
consensus             CACGCAGTTCACTCCGGTCCAAGCTCTGATTCAGCCCTTAGTTCCGGCTATACGGGTCTT
 
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JMSF034N07-           CAAGAGCTTCCCGCTCAATGGGATTCTGGTGTTCTTCACGCTCTACTTCGTCGTTGTCAG
rJMSF034N07+          CAAGAGCTTCCCGCTCAATGGGATTCTGGTGTTCTTCACGCTCTACTTCGTCGTTGTCAG
rJMFF026L18+          CAAGAGCTTCCCGCTCAATGGGATTCTGGTGTTCTTCACGCTCTACTTCGTCGTTGTCAG
rJMSF038I12+          CAAGAGCTTCCCGCTCAATGGGATTCTGGTGTTCTTCACGCTCTACTTCGTCGTTGTCAG
                      ____________________________________________________________
consensus             CAAGAGCTTCCCGCTCAATGGGATTCTGGTGTTCTTCACGCTCTACTTCGTCGTTGTCAG
 
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JMSF034N07-           AAACCCCAATTTCAGTAGGTACGTGAGGTTCAACACCATGCAGGCGATTGTGCTTGATGT
rJMSF034N07+          AAACCCCAATTTCAGTAGGTACGTGAGGTTCAACACCATGCAGGCGATTGTGCTTGATGT
rJMFF026L18+          AAACCCCAATTTCAGTAGGTACGTGAGGTTCAACACCATGCAGGCGATTGTGCTTGATGT
rJMSF038I12+          AAACCCCAATTTCAGTAGGTACGTGAGGTTCAACACCATGCAGGCGATTGTGCTTGATGT
                      ____________________________________________________________
consensus             AAACCCCAATTTCAGTAGGTACGTGAGGTTCAACACCATGCAGGCGATTGTGCTTGATGT
 
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JMSF034N07-           GCTCTTGATCTTCCCGGATCTTTTGGAGCGGAGTTTCAGCCCCAAAGATGGGTTGGGGTT
rJMSF034N07+          GCTCTTGATCTTCCCGGATCTTTTGGAGCGGAGTTTCAGCCCCAAAGATGGGTTGGGGTT
rJMFF026L18+          GCTCTTGATCTTCCCGGATCTTTTGGAGCGGAGTTTCAGCCCCAAAGATGGGTTGGGGTT
rJMSF038I12+          GCTCTTGATCTTCCCGGATCTTTTGGAGCGGAGTTTCAGCCCCAAAGATGGGTTGGGGTT
                      ____________________________________________________________
consensus             GCTCTTGATCTTCCCGGATCTTTTGGAGCGGAGTTTCAGCCCCAAAGATGGGTTGGGGTT
 
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JMSF034N07-           GGATTTGATGATGAGCTTCGATAGCACTGTGTTCTTGTTCCTCTTGGTCTCCTTGATCTA
rJMSF034N07+          GGATTTGATGATGAGCTTCGATAGCACTGTGTTCTTGTTCCTCTTGGTCTCCTTGATCTA
rJMFF026L18+          GGATTTGATGATGAGCTTCGATAGCACTGTGTTCTTGTTCCTCTTGGTCTCCTTGATCTA
rJMSF038I12+          GGATTTGATGATGAGCTTCGATAGCACTGTGTTCTTGTTCCTCTTGGTCTCCTTGATCTA
                      ____________________________________________________________
consensus             GGATTTGATGATGAGCTTCGATAGCACTGTGTTCTTGTTCCTCTTGGTCTCCTTGATCTA
 
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JMSF034N07-           CGGCTCGTCTTCT                                               
rJMSF034N07+          CGGCTCGTCTTCTTGCTTTTTGGGTCAACTCCCCAGATTGCCCCTTGTTGCAGAGGCTGC
rJMFF026L18+          CGGCTCGTCTTCTTGCTTTTTGGGTCAACTCCCCAGATTGCCCCTTGTTGCAGAGGCTGC
rJMSF038I12+          CGGCTCGTCTTCTTGCTTTTTGGGTCAACTCCCCAGATTGCCCCTTGTTGCAGAGGCTGC
                      ____________________________________________________________
consensus             CGGCTCGTCTTCTTGCTTTTTGGGTCAACTCCCCAGATTGCCCCTTGTTGCAGAGGCTGC
 
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rJMSF034N07+          GGATAGGCAAGTGCTATGAGCTTTTCCGTAATTTATTCCTGTTCAAGCTACT        
rJMFF026L18+          GGATAGGCAAGTGCTATGAGCTTTTCCGTAATTTATTCCTGTTCAAGCTACTTTCTTGAA
rJMSF038I12+          GGATAGGCAAGTGCTATGAGCTTTTCCGTAATTTATTCCTGTTCAAGCTACTTTCTTGAA
                      ____________________________________________________________
consensus             GGATAGGCAAGTGCTATGAGCTTTTCCGTAATTTATTCCTGTTCAAGCTACTTTCTTGAA
 
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rJMFF026L18+          TGTAC-ACTTATTACTTGGATTCAATACAAGTATAGCTTGATTGTGCAAGAGAAAAA   
rJMSF038I12+          TGTACAACTTATTACTTGGATTCAATACAAGTATAGCTTGATTGTGCAAGAGAAAAATCT
                      ____________________________________________________________
consensus             TGTACAACTTATTACTTGGATTCAATACAAGTATAGCTTGATTGTGCAAGAGAAAAATCT