Contig 012697:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017O07Sequence405012697 (4)gb|KDP46757.1|2e-12hypothetical protein JCGZ_06545 [Jatropha curcas]687012697 (4)ref|XP_009611393.1|2e-44PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Nicotiana tomentosifo
JMSF038H05Sequence673012697 (4)ref|XP_009611393.1|1e-44PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Nicotiana tomentosifo694012697 (4)ref|XP_009611393.1|2e-44PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Nicotiana tomentosifo

Alignment

This contig is upended


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JMSF038H05-                                    GGGCTCAACTTTCAAGATAAGCTCCGCGTCTCATT
JMSF017O07-                                          AACTTTCAAGATAAGCTCCGCGTCTCATT
rJMSF017O07+                                         AACTTTCAAGATAAGCTCCGCGTCTCATT
rJMSF038H05+                                         AACTTTCAAGATAAGCTCCGCGTCTCATT
                      ____________________________________________________________
consensus                                      GGGCTCAACTTTCAAGATAAGCTCCGCGTCTCATT
 
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JMSF038H05-           ATTCAACTTGAATTTACCAAATCGCCACCATGATTTCCTTCTCCGCTTCTTCCAACTTCC
JMSF017O07-           ATTCAACTTGAATTTACCAAATCGCCACCATGATTTCCTTCTCCGCTTCTTCCAACTTCC
rJMSF017O07+          ATTCAACTTGAATTTACCAAATCGCCACCATGATTTCCTTCTCCGCTTCTTCCAACTTCC
rJMSF038H05+          ATTCAACTTGAATTTACCAAATCGCCACCATGATTTCCTTCTCCGCTTCTTCCAACTTCC
                      ____________________________________________________________
consensus             ATTCAACTTGAATTTACCAAATCGCCACCATGATTTCCTTCTCCGCTTCTTCCAACTTCC
 
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JMSF038H05-           TCCTCCAATCGCCGCCGCCCAGAGCCACCGCCTTCGCCGCCGACAATTCTCCTTCTCCGC
JMSF017O07-           TCCTCCAATCGCCGCCGCCCAGAGCCACCGCCTTCGCCGCCGACAATTCTCCTTCTCCGC
rJMSF017O07+          TCCTCCAATCGCCGCCGCCCAGAGCCACCGCCTTCGCCGCCGACAATTCTCCTTCTCCGC
rJMSF038H05+          TCCTCCAATCGCCGCCGCCCAGAGCCACCGCCTTCGCCGCCGACAATTCTCCTTCTCCGC
                      ____________________________________________________________
consensus             TCCTCCAATCGCCGCCGCCCAGAGCCACCGCCTTCGCCGCCGACAATTCTCCTTCTCCGC
 
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JMSF038H05-           CGTCGCCGTCGGTTGTTAAGTTCCGGCAGCCGCGGAGTTCGCCCGTCTGCGCGGTCGCAA
JMSF017O07-           CGTCGCCGTCGGTTGTTAAGTTCCGGCAGCCGCGGAGTTCGCCCGTCTGCGCGGTCGCAA
rJMSF017O07+          CGTCGCCGTCGGTTGTTAAGTTCCGGCAGCCGCGGAGTTCGCCCGTCTGCGCGGTCGCAA
rJMSF038H05+          CGTCGCCGTCGGTTGTTAAGTTCCGGCAGCCGCGGAGTTCGCCCGTCTGCGCGGTCGCAA
                      ____________________________________________________________
consensus             CGTCGCCGTCGGTTGTTAAGTTCCGGCAGCCGCGGAGTTCGCCCGTCTGCGCGGTCGCAA
 
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JMSF038H05-           CCGCGGCTTACGCCGAGGAGGAGACGGAAGCCGCCGCTTTTTCGTCGTCGCCGCCGTTGC
JMSF017O07-           CCGCGGCTTACGCCGAGGAGGAGACGGAAGCCGCCGCTTTTTCGTCGTCGCCGCCGTTGC
rJMSF017O07+          CCGCGGCTTACGCCGAGGAGGAGACGGAAGCCGCCGCTTTTTCGTCGTCGCCGCCGTTGC
rJMSF038H05+          CCGCGGCTTACGCCGAGGAGGAGACGGAAGCCGCCGCTTTTTCGTCGTCGCCGCCGTTGC
                      ____________________________________________________________
consensus             CCGCGGCTTACGCCGAGGAGGAGACGGAAGCCGCCGCTTTTTCGTCGTCGCCGCCGTTGC
 
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JMSF038H05-           ATCCGGAGATAAAATCGCCCTCCTCCGCGACGTCGTTTTACGAGATTCTCGGGATTCCGG
JMSF017O07-           ATCCGGAGATAAAATCGCCCTCCTCCGCGACGTCGTTTTACGAGATTCTCGGGATTCCGG
rJMSF017O07+          ATCCGGAGATAAAATCGCCCTCCTCCGCGACGTCGTTTTACGAGATTCTCGGGATTCCGG
rJMSF038H05+          ATCCGGAGATAAAATCGCCCTCCTCCGCGACGTCGTTTTACGAGATTCTCGGGATTCCGG
                      ____________________________________________________________
consensus             ATCCGGAGATAAAATCGCCCTCCTCCGCGACGTCGTTTTACGAGATTCTCGGGATTCCGG
 
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JMSF038H05-           TGGGAGCGACGAGCGAGGTGATCAAAGCGGCGTACCGGAGACTCGCTCGTGTCTGCCACC
JMSF017O07-           TGGGAGCGACGAGCGAGGTGATCAAAGCGGCGTACCGGAGACTCGCTCGTGTCTGCCACC
rJMSF017O07+          TGGGAGCGACGAGCGAGGTGATCAAAGCGGCGTACCGGAGACTCGCTCGTGTCTGCCACC
rJMSF038H05+          TGGGAGCGACGAGCGAGGTGATCAAAGCGGCGTACCGGAGACTCGCTCGTGTCTGCCACC
                      ____________________________________________________________
consensus             TGGGAGCGACGAGCGAGGTGATCAAAGCGGCGTACCGGAGACTCGCTCGTGTCTGCCACC
 
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JMSF038H05-           CCGACGTGGCGGGGAGTCGCCGTAAGGACGCCTCCGCCGACGAGTTCATGAAGATTCATA
JMSF017O07-           CCGACGTGGCGGGGA                                             
rJMSF017O07+          CCGACGTGGCGGGGAGTCGCCGTAAGGACGCCTCCGCCGACGAGTTCATGAAGATTCATA
rJMSF038H05+          CCGACGTGGCGGGGAGTCGCCGTAAGGACGCCTCCGCCGACGAGTTCATGAAGATTCATA
                      ____________________________________________________________
consensus             CCGACGTGGCGGGGAGTCGCCGTAAGGACGCCTCCGCCGACGAGTTCATGAAGATTCATA
 
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JMSF038H05-           CTGCCTACTCCACGCTGTCGGATCCCGATAAACGCGCGGACTATGATCGGCAACTCTTCC
rJMSF017O07+          CTGCCTACTCCACGCTGTCGGATCCCGATAAACGCGCGGACTATGATCGGCAACTCTTCC
rJMSF038H05+          CTGCCTACTCCACGCTGTCGGATCCCGATAAACGCGCGGACTATGATCGGCAACTCTTCC
                      ____________________________________________________________
consensus             CTGCCTACTCCACGCTGTCGGATCCCGATAAACGCGCGGACTATGATCGGCAACTCTTCC
 
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JMSF038H05-           TCCGTCGACGGAGTGTCAACTTATACTCGCCTACAATGTCATCGAGATTCACCGGAAATA
rJMSF017O07+          TCCGTCGACGGAGTGTCAACTTATACTCGCCTACAATGTCATCGAGATTCACCGGAAATA
rJMSF038H05+          TCCGTCGACGGAGTGTCAACTTATACTCGCCTACAATGTCATCGAGATTCACCGGAAATA
                      ____________________________________________________________
consensus             TCCGTCGACGGAGTGTCAACTTATACTCGCCTACAATGTCATCGAGATTCACCGGAAATA
 
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JMSF038H05-           CTCGCCGGAATTGGGAGACCGATCAGTGCTGGTAGTGCCTTATAGAATTGAAGTGAATTA
rJMSF017O07+          CTCGCCGGAATTGGGAGACCGATCAGTGCTGGTAGTGCCTTATAGAATTGAAGTGAATTA
rJMSF038H05+          CTCGCCGGAATTGGGAGACCGATCAGTGCTGGTAGTGCCTTATAGAATTGAAGTGAATTA
                      ____________________________________________________________
consensus             CTCGCCGGAATTGGGAGACCGATCAGTGCTGGTAGTGCCTTATAGAATTGAAGTGAATTA
 
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JMSF038H05-           GGATTAGAATTGTACAGTGTAC                                      
rJMSF017O07+          GGATTAGAATTGTACAGTGTACCACTTGTGAGGCTACGACATAGCCAGAAAAAAAAT   
rJMSF038H05+          GGATTAGAATTGTACAGTGTA-CACTTGTGAGGCTACGACATAGCCAGAAAAAAAATAAA
                      ____________________________________________________________
consensus             GGATTAGAATTGTACAGTGTACCACTTGTGAGGCTACGACATAGCCAGAAAAAAAATAAA