Contig 012691:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026D08Sequence644012691 (4)ref|XP_009610414.1|6e-47PREDICTED: probable inactive shikimate kinase like 1, chloroplastic isoform X1 714012691 (4)ref|XP_011098936.1|5e-85PREDICTED: probable inactive shikimate kinase like 1, chloroplastic [Sesamum in
JMSF037G09Sequence647012691 (4)ref|XP_009610414.1|1e-58PREDICTED: probable inactive shikimate kinase like 1, chloroplastic isoform X1 746012691 (4)ref|XP_011098936.1|2e-44PREDICTED: probable inactive shikimate kinase like 1, chloroplastic [Sesamum in

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-                                                           GAGGAAATTTAA
                      ____________________________________________________________
consensus                                                             GAGGAAATTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           GGCAAGAGGATAAAGTGTTGGAAAAAGTGGGAGAAGGCGAAGGTGCGAAGGATTTAGGAA
JMSF037G09-                                                   AGGTGCGAAGGATTTAGGAA
                      ____________________________________________________________
consensus             GGCAAGAGGATAAAGTGTTGGAAAAAGTGGGAGAAGGCGAAGGTGCGAAGGATTTAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           TGGAGATAATCCGAGCAAGTTATGGCGGTTTCAACGTCAGATTGCTTCAGCCGTCTGCTT
JMSF037G09-           TGGAGATAATCCGAGCAAGTTATGGCGGTTTCAACGTCAGATTGCTTCAGCCGTCTGCTT
                      ____________________________________________________________
consensus             TGGAGATAATCCGAGCAAGTTATGGCGGTTTCAACGTCAGATTGCTTCAGCCGTCTGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           TAACGTTCTCGAAGACTTCCCTCCCTACTTGCCATTCTCCATTTCGAAGAGTTCCGGCTA
JMSF037G09-           TAACGTTCTCGAAGACTTCCCTCCCTACTTGCCATTCTCCATTTCGAAGAGTTCCGGCTA
                      ____________________________________________________________
consensus             TAACGTTCTCGAAGACTTCCCTCCCTACTTGCCATTCTCCATTTCGAAGAGTTCCGGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           CTTCACACTCAATTTCGTCCCTGAAGCCCACATTTCCTTGCCGGAAACCTACCGTGTGCG
JMSF037G09-           CTTCACACTCAATTTCGTCCCTGAAGCCCACATTTCCTTGCCGGAAACCTACCGTGTGCG
                      ____________________________________________________________
consensus             CTTCACACTCAATTTCGTCCCTGAAGCCCACATTTCCTTGCCGGAAACCTACCGTGTGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           CACTTCTCGACGATAATGATCCCGATTCCACAGCGGATGTCGCAAATGCTGCTGATCTGT
JMSF037G09-           CACTTCTCGACGATAATGATCCCGATTCCACAGCGGATGTCGCAAATGCTGCTGATCTGT
                      ____________________________________________________________
consensus             CACTTCTCGACGATAATGATCCCGATTCCACAGCGGATGTCGCAAATGCTGCTGATCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           CGTTCGTGGTGAAGTTGTATTCAGAAGAGGGCGTTTGAGATATCCCCTGATTTGAAAGGA
JMSF037G09-           CGTTCGTGGTGAAGTTGTATTCAGAAGAGGGCGTTTGAGATATCCCCTGATTTGAAAGGA
                      ____________________________________________________________
consensus             CGTTCGTGGTGAAGTTGTATTCAGAAGAGGGCGTTTGAGATATCCCCTGATTTGAAAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           ACTTGTATATTTCTTGTTGGGATTAATAGCTCCATTAAATCCAACTTGGGGAAACTTCTT
JMSF037G09-           ACTTGTATATTTCTTGTTGGGATTAATAGCTCCATTAAATCCAACTTGGGGAAACTTCTT
                      ____________________________________________________________
consensus             ACTTGTATATTTCTTGTTGGGATTAATAGCTCCATTAAATCCAACTTGGGGAAACTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           GCAGATGAATTGAAATACTATTATTTCGACAGTGATAGTGTAGTTGAAGATGCTGTAGGA
JMSF037G09-           GCAGATGAATTGAAATACTATTATTTCGACAGTGATAGTGTAGTTGAAGATGCTGTAGGA
rJMSF026D08+           CAGATGAATTGAAATACTATTATTTCGACAGTGATAGTGTAGTTGAAGATGCTGTAGGA
                      ____________________________________________________________
consensus             GCAGATGAATTGAAATACTATTATTTCGACAGTGATAGTGTAGTTGAAGATGCTGTAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           GGAAAGGAGGCTGCTACATCATTTATACAGAGTGATAAGGAGGGGTTTCAGGACACAGAG
JMSF037G09-           GGAAAGGAGGCTGCTACATCATTTATACAGAGTGATAAGGAGGGGTTTCAGGACACAGAG
rJMSF026D08+          GGAAAGGAGGCTGCTACATCATTTATACAGAGTGATAAGGAGGGGTTTCAGGACACAGAG
                      ____________________________________________________________
consensus             GGAAAGGAGGCTGCTACATCATTTATACAGAGTGATAAGGAGGGGTTTCAGGACACAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           ACAGAGGTACTGAGGCAGCTGTCATCCATGGGCCGGCTGGTTGTTTCTGCTGGGAATGCT
JMSF037G09-           ACAGAGGTACTGAGGCAGCTGTCATCCATGGGCCGGCTGGTTGTTTCTGCTGGGAATGCT
rJMSF026D08+          ACAGAGGTACTGAGGCAGCTGTCATCCATGGGCCGGCTGGTTGTTTCTGCTGGGAATGCT
                      ____________________________________________________________
consensus             ACAGAGGTACTGAGGCAGCTGTCATCCATGGGCCGGCTGGTTGTTTCTGCTGGGAATGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D08-           GCTGTTCGGAATGCAACCAATCTGGCACTTAT                            
JMSF037G09-           GCTGTTCGGAATGCAACCAATCTGGCACTTATAAGGCATGGCATATCCATATGGATCAAA
rJMSF026D08+          GCTGTTCGGAATGCAACCAATCTGGCACTTATAAGGCATGGCATATCCATATGGATCAAA
rJMSF037G09+                                            GGCATGGCATATCCATATGGATCAAA
                      ____________________________________________________________
consensus             GCTGTTCGGAATGCAACCAATCTGGCACTTATAAGGCATGGCATATCCATATGGATCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037G09-           GTTCCTTTACAGTTTGTGGCCAGG                                    
rJMSF026D08+          GTTCCTTTACAGTTTGTGGCCAGGGAGGTTGTGGATGATAAATTTCAACTTCCTGCTTCT
rJMSF037G09+          GTTCCTTTACAGTTTGTGGCCAGGGAGGTTGTGGATGATAAATTTCAACTTCCTGCTTCT
                      ____________________________________________________________
consensus             GTTCCTTTACAGTTTGTGGCCAGGGAGGTTGTGGATGATAAATTTCAACTTCCTGCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026D08+          CAAGTTCCGATTTCTGGATCCTATTCTGAGGTGTTGGCTCAGCTGACTGCTGCTTATGAA
rJMSF037G09+          CAAGTTCCGATTTCTGGATCCTATTCTGAGGTGTTGGCTCAGCTGACTGCTGCTTATGAA
                      ____________________________________________________________
consensus             CAAGTTCCGATTTCTGGATCCTATTCTGAGGTGTTGGCTCAGCTGACTGCTGCTTATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026D08+          GAAACGCAGGATGGATATGCCACAGCTGATGCAACTGTCTCGCTCCAGAAAGTAGCTTCT
rJMSF037G09+          GAAACGCAGGATGGATATGCCACAGCTGATGCAACTGTCTCGCTCCAGAAAGTAGCTTCT
                      ____________________________________________________________
consensus             GAAACGCAGGATGGATATGCCACAGCTGATGCAACTGTCTCGCTCCAGAAAGTAGCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026D08+          CAGTTGGGTTATGATGATATTGAATCAGTGAGCACAGAAGAGTTGTGTTTGGAGGTTATG
rJMSF037G09+          CAGTTGGGTTATGATGATATTGAATCAGTGAGCACAGAAGAGTTGTGTTTGGAGGTTATG
                      ____________________________________________________________
consensus             CAGTTGGGTTATGATGATATTGAATCAGTGAGCACAGAAGAGTTGTGTTTGGAGGTTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026D08+          AAGGAGATAGGCAAACTGATGAGGAAAAAGAAGATGATGGAAGAAGCTGCCAGGCCATTT
rJMSF037G09+          AAGGAGATAGGCAAACTGATGAGGAAAAAGAAGATGATGGAAGAAGCTGCCAGGCCATTT
                      ____________________________________________________________
consensus             AAGGAGATAGGCAAACTGATGAGGAAAAAGAAGATGATGGAAGAAGCTGCCAGGCCATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026D08+          TAGCTGTGAGTTGGTATACTTTAATCACCCACCCCAAAGGACTTGAATTGCTACATTAGG
rJMSF037G09+          TAGCTGTGAGTTGGTATACTTTAATCACCCACCCCAAAGGACTTGAATTGCTACATTAGG
                      ____________________________________________________________
consensus             TAGCTGTGAGTTGGTATACTTTAATCACCCACCCCAAAGGACTTGAATTGCTACATTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026D08+          TCTTACTCATTTCTGTAACATGACAGAAATCATTTTTGTGCATTGCTGTATAAGGTGAGA
rJMSF037G09+          TCTTACTCATTTCTGTAACATGACAGAAATCATTTTTGTGCATTGCTGTATAAGGTGAGA
                      ____________________________________________________________
consensus             TCTTACTCATTTCTGTAACATGACAGAAATCATTTTTGTGCATTGCTGTATAAGGTGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026D08+          TGTTTTGTTTTTGAACTTGATGTGTATATTAAATAAATGCTACACAACATCTTCC     
rJMSF037G09+          TGTTTTGTTTTTGAACTTGATGTGTATATTAAATAAATGCTACACAACATCTTCCTAGAT
                      ____________________________________________________________
consensus             TGTTTTGTTTTTGAACTTGATGTGTATATTAAATAAATGCTACACAACATCTTCCTAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037G09+          AGAGCCATTTGGGTAAAATGCAACTTGAGAAGATTGTGTTAAGCGGTCCTGTTTTTACCA
                      ____________________________________________________________
consensus             AGAGCCATTTGGGTAAAATGCAACTTGAGAAGATTGTGTTAAGCGGTCCTGTTTTTACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037G09+          TGCTTTCACCTCTTGGATGTAAAATGTGTGTTTTTAGTCTTTGAAGTCTTCTCAGGTTTC
                      ____________________________________________________________
consensus             TGCTTTCACCTCTTGGATGTAAAATGTGTGTTTTTAGTCTTTGAAGTCTTCTCAGGTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037G09+          ATAATACATGAACTTGATTCAGAGTAAGGCGGCGCATTCGTGAAATATTTAGTTAGGGTG
                      ____________________________________________________________
consensus             ATAATACATGAACTTGATTCAGAGTAAGGCGGCGCATTCGTGAAATATTTAGTTAGGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037G09+          TGTTTGGTTGGGGACTTTGTATTTCACTATAGGTTTTGATATTTATTATCATGTTATTGT
                      ____________________________________________________________
consensus             TGTTTGGTTGGGGACTTTGTATTTCACTATAGGTTTTGATATTTATTATCATGTTATTGT