Contig 012682:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035L05Sequence655012682 (2)ref|XP_010654301.1|7e-59PREDICTED: transcription factor-like protein DPA [Vitis vinifera]731012682 (2)ref|XP_010654301.1|1e-44PREDICTED: transcription factor-like protein DPA [Vitis vinifera]

Alignment

This contig is upended


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JMSF035L05-                                              GATTCAAGAACGCCTTTCCGTCCTG
                      ____________________________________________________________
consensus                                                GATTCAAGAACGCCTTTCCGTCCTG
 
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JMSF035L05-           TATAGATCCTGGAAGAATTCTACGTCGCCGATCAGTGAATTCCAGAAAAACTTAGTACGA
                      ____________________________________________________________
consensus             TATAGATCCTGGAAGAATTCTACGTCGCCGATCAGTGAATTCCAGAAAAACTTAGTACGA
 
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JMSF035L05-           AGTGATGGATCGTAAGTTTCTTATGCAACATTCCAAAGGGCAGTATCCTTTTCTGGATGC
                      ____________________________________________________________
consensus             AGTGATGGATCGTAAGTTTCTTATGCAACATTCCAAAGGGCAGTATCCTTTTCTGGATGC
 
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JMSF035L05-           AGTATGTTATGTTGATAACAATGAGGATATTGATCCGTCTGGTCCGAACAGTGTCGAAAA
                      ____________________________________________________________
consensus             AGTATGTTATGTTGATAACAATGAGGATATTGATCCGTCTGGTCCGAACAGTGTCGAAAA
 
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JMSF035L05-           GACGAAGAGGGGATCAAAAGTTGTTGGTGGAGGCCTGCGGCAGTACAGTAACATGGTCTG
                      ____________________________________________________________
consensus             GACGAAGAGGGGATCAAAAGTTGTTGGTGGAGGCCTGCGGCAGTACAGTAACATGGTCTG
 
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JMSF035L05-           TATGAAGGTCAAAGACAAGGGAAGAACCACTTACAGTGAGGTTGCAGATGAAATTATAGC
                      ____________________________________________________________
consensus             TATGAAGGTCAAAGACAAGGGAAGAACCACTTACAGTGAGGTTGCAGATGAAATTATAGC
 
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JMSF035L05-           TGATTTTAGAGCAACGGAAGTGAATTCTTCAGTTTCTATGAATGAGTCTGATGAGAAGAA
                      ____________________________________________________________
consensus             TGATTTTAGAGCAACGGAAGTGAATTCTTCAGTTTCTATGAATGAGTCTGATGAGAAGAA
 
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JMSF035L05-           TATACGTAGACGGGTATATGATGTATTAAATGTCCTTATGGCTCTTGACATTGTTACAAA
                      ____________________________________________________________
consensus             TATACGTAGACGGGTATATGATGTATTAAATGTCCTTATGGCTCTTGACATTGTTACAAA
 
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JMSF035L05-           GGACAGAAAGGAAATTCAATGGAAGGGACTGCCTACTTCAGCTGGAGTGGATATGGACGA
rJMSF035L05+                                                                 GACGA
                      ____________________________________________________________
consensus             GGACAGAAAGGAAATTCAATGGAAGGGACTGCCTACTTCAGCTGGAGTGGATATGGACGA
 
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JMSF035L05-           AATTAAGGGGATGCGTGCTAAGCTGAAAGATGAGATTAATAAGAAAACTGCATATTTGAA
rJMSF035L05+          AATTAAGGGGATGCGTGCTAAGCTGAAAGATGAGATTAATAAGAAAACTGCATATTTGAA
                      ____________________________________________________________
consensus             AATTAAGGGGATGCGTGCTAAGCTGAAAGATGAGATTAATAAGAAAACTGCATATTTGAA
 
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JMSF035L05-           AGACCTAGAAGACCAGATTGCAGGTCATCAAGCTCTTATATGGCGGAATCAGCAGTTGTA
rJMSF035L05+          AGACCTAGAAGACCAGATTGCAGGTCATCAAGCTCTTATATGGCGGAATCAGCAGTTGTA
                      ____________________________________________________________
consensus             AGACCTAGAAGACCAGATTGCAGGTCATCAAGCTCTTATATGGCGGAATCAGCAGTTGTA
 
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JMSF035L05-           CGATTCTAAAAACAGCCCAACCAAGGGATT                              
rJMSF035L05+          CGATTCTAAAAACAGCCCAACCAAGGGATTCCCTTTGCCTTTTTTAATTGCGAAGACTGC
                      ____________________________________________________________
consensus             CGATTCTAAAAACAGCCCAACCAAGGGATTCCCTTTGCCTTTTTTAATTGCGAAGACTGC
 
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rJMSF035L05+          ACCTCATGCTACTGTTGAGATTGAGATTTCTGAGGATATGCAGTTGGTCCACTTCGACTT
                      ____________________________________________________________
consensus             ACCTCATGCTACTGTTGAGATTGAGATTTCTGAGGATATGCAGTTGGTCCACTTCGACTT
 
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rJMSF035L05+          CAACAGCACACCTTTCTCTTTGCACGATGATGCTTACGTTCTAAAGTTGATGCGCCACTA
                      ____________________________________________________________
consensus             CAACAGCACACCTTTCTCTTTGCACGATGATGCTTACGTTCTAAAGTTGATGCGCCACTA
 
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rJMSF035L05+          CCGGCTCTTAGAGGGTGCACAGGCTTCCCAAACTTCTGCAATCCTCTCTTCATCGCCTTG
                      ____________________________________________________________
consensus             CCGGCTCTTAGAGGGTGCACAGGCTTCCCAAACTTCTGCAATCCTCTCTTCATCGCCTTG
 
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rJMSF035L05+          CTCTGATGTGGATTCATCAGTTGGAGGTAGACGGTAGACTTGTTCATTCACTATGAAACT
                      ____________________________________________________________
consensus             CTCTGATGTGGATTCATCAGTTGGAGGTAGACGGTAGACTTGTTCATTCACTATGAAACT
 
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rJMSF035L05+          GATACTTTTTGATGAAATGAACATGCACATTTTTCCCCAATATTTCATATCTAGGTGACT
                      ____________________________________________________________
consensus             GATACTTTTTGATGAAATGAACATGCACATTTTTCCCCAATATTTCATATCTAGGTGACT
 
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rJMSF035L05+          TGGCTTGGGGGTTAGACGACATACAAGTATTTTATGTATTCCATAGAATAATCGGCGAAA
                      ____________________________________________________________
consensus             TGGCTTGGGGGTTAGACGACATACAAGTATTTTATGTATTCCATAGAATAATCGGCGAAA
 
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rJMSF035L05+          AAAAAGAGAGAGATGCTTGTATAGGTTTACAGTTGGATAGTTACAGTTGTGTGGTTTCTT
                      ____________________________________________________________
consensus             AAAAAGAGAGAGATGCTTGTATAGGTTTACAGTTGGATAGTTACAGTTGTGTGGTTTCTT
 
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rJMSF035L05+          CTGATATACGACATTGGAATTTCGACAATACAAAGGAGAATTAGATTATTACAAACGACT
                      ____________________________________________________________
consensus             CTGATATACGACATTGGAATTTCGACAATACAAAGGAGAATTAGATTATTACAAACGACT
 
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rJMSF035L05+          GAATTTGTAACACAATTTCATGATAGCATTATCTGTTTGAAATTACAATATGATTAAGAT
                      ____________________________________________________________
consensus             GAATTTGTAACACAATTTCATGATAGCATTATCTGTTTGAAATTACAATATGATTAAGAT