Contig 012676:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF034E07Sequence653009443 (7)gb|AHM22941.1|3e-633-hydroxy-3-methylglutaryl coenzyme A synthase [Nicotiana tabacum]574012676 (2)ref|XP_009800463.1|1e-68PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Nicotiana sylvestris]
JMSF035M07Sequence648009443 (7)gb|AHM22941.1|1e-853-hydroxy-3-methylglutaryl coenzyme A synthase [Nicotiana tabacum]779012676 (2)ref|XP_009800463.1|3e-91PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF035M07+                                                                   ATA
                      ____________________________________________________________
consensus                                                                      ATA
 
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rJMSF035M07+          TTCAATGATGNTGTGAGGAATGCCAGCTACATTGATGAAGGAGCCAAGGAAAAGTGGGCA
                      ____________________________________________________________
consensus             TTCAATGATGNTGTGAGGAATGCCAGCTACATTGATGAAGGAGCCAAGGAAAAGTGGGCA
 
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rJMSF035M07+          CCATTTTCATCTTTAAGTGGTGATGAAAGTTACTCAAACCGTGATCTGAAAAGGCATCAC
                      ____________________________________________________________
consensus             CCATTTTCATCTTTAAGTGGTGATGAAAGTTACTCAAACCGTGATCTGAAAAGGCATCAC
 
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rJMSF035M07+          AGCAAGTTGCAAAACCACTCTATGATGCAAAGGTGCAGCCAGCAACATTAGTACCCAAAC
                      ____________________________________________________________
consensus             AGCAAGTTGCAAAACCACTCTATGATGCAAAGGTGCAGCCAGCAACATTAGTACCCAAAC
 
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rJMSF035M07+          AAATTGGAAACATGTACACAGCATCTCTCTATGCAGCTTTCATCTCGCTTCTCCACAACA
rJMSF034E07+                                   TCTCTATGCAGCTTTCATCTCGCTTCTCCACAACA
                      ____________________________________________________________
consensus             AAATTGGAAACATGTACACAGCATCTCTCTATGCAGCTTTCATCTCGCTTCTCCACAACA
 
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rJMSF035M07+          AGCATGACACTTTGCCTGGGCAACGGGTGATACTGTTCTCATATGGCAGTGGATTGACAG
rJMSF034E07+          AGCATGACACTTTGCCTGGGCAACGGGTGATACTGTTCTCATATGGCAGTGGATTGACAG
                      ____________________________________________________________
consensus             AGCATGACACTTTGCCTGGGCAACGGGTGATACTGTTCTCATATGGCAGTGGATTGACAG
 
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rJMSF035M07+          CCACAATGTTTTCCCTCCGCCTTCGGGAGGGTCAGCATCCATTCAGCTTGTCAAACATTG
rJMSF034E07+          CCACAATGTTTTCCCTCCGCCTTCGGGAGGGTCAGCATCCATTCAGCTTGTCAAACATTG
                      ____________________________________________________________
consensus             CCACAATGTTTTCCCTCCGCCTTCGGGAGGGTCAGCATCCATTCAGCTTGTCAAACATTG
 
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rJMSF035M07+          CAGCCGTCTTGAACGTTGCAGGCAAGTTGAAGGCAAGGCACGAGTTAACTCCTGAAAAAT
rJMSF034E07+          CAGCCGTCTTGAACGTTGCAGGCAAGTTGAAGGCAAGGCACGAGTTAACTCCTGAAAAAT
                      ____________________________________________________________
consensus             CAGCCGTCTTGAACGTTGCAGGCAAGTTGAAGGCAAGGCACGAGTTAACTCCTGAAAAAT
 
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rJMSF035M07+          TCATCGAATTAATGAAAGTAATGGAGCACAGGTACGGTGCAAAGGACTTTGTGACAAGCA
rJMSF034E07+          TCATCGAATTAATGAAAGTAATGGAGCACAGGTACGGTGCAAAGGACTTTGTGACAAGCA
                      ____________________________________________________________
consensus             TCATCGAATTAATGAAAGTAATGGAGCACAGGTACGGTGCAAAGGACTTTGTGACAAGCA
 
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rJMSF035M07+          AGGATTGCAGCCTCCTAGCTCCGGGAACCTATTATCTCACTGAGGTCGATTCCAAGTACC
rJMSF034E07+          AGGATTGCAGCCTCCTAGCTCCGGGAACCTATTATCTCACTGAGGTCGATTCCAAGTACC
                      ____________________________________________________________
consensus             AGGATTGCAGCCTCCTAGCTCCGGGAACCTATTATCTCACTGAGGTCGATTCCAAGTACC
 
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rJMSF035M07+          GGAGATTCTACGCGCAAAAAGCAAAGGATGCAGCCACCACCGCTTTGGCCAACGGCCACT
rJMSF034E07+          GGAGATTCTACGCGCAAAAAGCAAAGGATGCAGCCACCACCGCTTTGGCCAACGGCCACT
                      ____________________________________________________________
consensus             GGAGATTCTACGCGCAAAAAGCAAAGGATGCAGCCACCACCGCTTTGGCCAACGGCCACT
 
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rJMSF035M07+          GAGGTGTTGGTAGATGCAGGTTGTTGTAAGGCCATGAAGTTGGCTTGTGGTCTCTTAGTT
rJMSF034E07+          GAGGTGTTGGTAGATGCAGGTTGTTGTAAGGCCATGAAGTTGGCTTGTGGTCTCTTAGTT
                      ____________________________________________________________
consensus             GAGGTGTTGGTAGATGCAGGTTGTTGTAAGGCCATGAAGTTGGCTTGTGGTCTCTTAGTT
 
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rJMSF035M07+          TGTCAGCAAATAGGAGAAATAACCATTGTGGTGTGAGTTTATTTGGCAGATCAGTTTTAT
rJMSF034E07+          TGTCAGCAAATAGGAGAAATAACCATTGTGGTGTGAGTTTATTTGGCAGATCAGTTTTAT
                      ____________________________________________________________
consensus             TGTCAGCAAATAGGAGAAATAACCATTGTGGTGTGAGTTTATTTGGCAGATCAGTTTTAT
 
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rJMSF035M07+          TTCGACAACCATTCGTGTACTATGTTTGAAAAGTTC                        
rJMSF034E07+          TTCGACAA-CATTCGTGTACTATGTTTGAAAAGTTCATTGTAGATGATTCAGACTTCATC
                      ____________________________________________________________
consensus             TTCGACAACCATTCGTGTACTATGTTTGAAAAGTTCATTGTAGATGATTCAGACTTCATC