Contig 012672:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+               TGGAAGCAGACAAATTNGTTGCAATTGGGCAACAAAAGGTGNTGGATCAAGTGAC
                      ____________________________________________________________
consensus                  TGGAAGCAGACAAATTNGTTGCAATTGGGCAACAAAAGGTGNTGGATCAAGTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          GACAAGCAGGTCTCAGATGNTAAAAGTGTTGTGGAAATAACAAATGGCACTTCAGATGAG
                      ____________________________________________________________
consensus             GACAAGCAGGTCTCAGATGNTAAAAGTGTTGTGGAAATAACAAATGGCACTTCAGATGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          AATCAGGAGAAGANTAATGAAGATGCACCTGAAAATAATCCCCAATATACCACCGTTTAT
                      ____________________________________________________________
consensus             AATCAGGAGAAGANTAATGAAGATGCACCTGAAAATAATCCCCAATATACCACCGTTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          GTTGGCAATCTTGCTCCTGAAGTTACTTCTGTTGATCTCCACCGTCTTTTTCATTCCCTT
rJMSF037A17+                               GTTACTTCTGTTGATCTCCACCGTCTTTTTCATTCCCTT
rJMSF033I01+                               GTTACTTCTGCTGATCTCCACCGTCTTTTTCATTCCCTT
                      ____________________________________________________________
consensus             GTTGGCAATCTTGCTCCTGAAGTTACTTCTGTTGATCTCCACCGTCTTTTTCATTCCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          TGCGCTGGAGTCATTGAAGATGTCCGTGTTCAACGTGACAAAGGCTTTGGATTTGTAAGA
rJMSF037A17+          TGCGCTGGAGTCATTGAAGATGTCCGTGTTCAACGTGACAAAGGCTTTGGATTTGTAAGA
rJMSF033I01+          TGCGCTGGAGTCATTGAAGATGTCCGTGTTCAACGTGACAAAGGCTTTGGATTTGTAAGA
                      ____________________________________________________________
consensus             TGCGCTGGAGTCATTGAAGATGTCCGTGTTCAACGTGACAAAGGCTTTGGATTTGTAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          TACAGCACCCATGCTGAAGCAGCTCGGGCCATTCAACTGGGGAATGCCCGAATTCTTTTT
rJMSF037A17+          TACAGCACCCATGCTGAAGCAGCTCGGGCCATTCAACTGGGGAATGCCCGAATTCTTTTT
rJMSF033I01+          TACAGCACCCATGCTGAAGCAGCTCGGGCCATTCAACTGGGGAATGCCCGAATTCTTTTT
                      ____________________________________________________________
consensus             TACAGCACCCATGCTGAAGCAGCTCGGGCCATTCAACTGGGGAATGCCCGAATTCTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          GGCAAACCTGTCAAGTGCTCGTGGGGAAGCAAGCCGACCATGCACGGAACCAGTTCCGCC
rJMSF037A17+          GGCAAACCTGTCAAGTGCTCGTGGGGAAGCAAGCCGACCATGCACGGAACCAGTTCCGCC
rJMSF033I01+          GGCAAACCTGTCAAGTGCTCGTGGGGAAGCAAGCCGACCATGCACGGAACCAGTTCCGCC
                      ____________________________________________________________
consensus             GGCAAACCTGTCAAGTGCTCGTGGGGAAGCAAGCCGACCATGCACGGAACCAGTTCCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          CCTCTGCCACCGCCAGCAGCACAGATACCCAATGTTTCGGCCGCCAATCTCGCAGCCTAC
rJMSF037A17+          CCTCTGCCACCGCCAGCAGCACAGATACCCAATGTTTCGGCCGCCAATCTCGCAGCCTAC
rJMSF033I01+          CCTCTGCCACCGCCAGCAGCACAGATACCCAATGTTTCGGCC--CAATCTCGCAGCCTAC
                      ____________________________________________________________
consensus             CCTCTGCCACCGCCAGCAGCACAGATACCCAATGTTTCGGCCGCCAATCTCGCAGCCTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          GAAATGCAACTCGCATTGAGCAAAATGGGCGCCGCACAAGCTCTCATGCACCCCCAAGGC
rJMSF037A17+          GAAATGCAACTCGCATTGAGCAAAATGGGCGCCGCACAAGCTCTCATGCACCCCCAAGGC
rJMSF033I01+          GAAATGCAACTCGCATTGAGCAAAATGGGCGCCGCACAAGCTCTCATGCACCCCCAAGGC
                      ____________________________________________________________
consensus             GAAATGCAACTCGCATTGAGCAAAATGGGCGCCGCACAAGCTCTCATGCACCCCCAAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          CAGCGAATTGGCGCCGCTAGTCATCAGGCAATGTACGATGGCAGTTATCCGGGCATCGCC
rJMSF037A17+          CAGCGAATTGGCGCCGCTAGTCATCAGGCAATGTACGATGGCAGTTATCCGGGCATCGCC
rJMSF033I01+          CAGCGAATTGGCGCCGCTAGTCATCAGGCAATGTACGATGGCAGTTATCCGGGCATCGCC
                      ____________________________________________________________
consensus             CAGCGAATTGGCGCCGCTAGTCATCAGGCAATGTACGATGGCAGTTATCCGGGCATCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          ACAACTCAACCACCAATGTACTATCAGTAATAAGTACCAGACAACTGGTGCCCCATAATC
rJMSF037A17+          ACAACTCAACCACCAATGTACTATCAGTAATAAGTACCAGACAACTGGTGCCCCATAATC
rJMSF033I01+          ACAACTCAACCACCAATGTACTATCAGTAATAAGTACCAGACAACTGGTGCCCCATAATC
                      ____________________________________________________________
consensus             ACAACTCAACCACCAATGTACTATCAGTAATAAGTACCAGACAACTGGTGCCCCATAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          ATAGGCTGTTTCCCCTTTTCCTCCTAATTTTAAGTGTGATATGTCCCCTTATATATACAT
rJMSF037A17+          ATAGGCTGTTTCCCCTTTTCCTCCTAATTTTAAGTGTGATATGTCCCCTTATATATACAT
rJMSF033I01+          ATAGGCTGTTTCCCCTTTTCCTCCTAATTTTAAGTGTGATATGTCCCCTTATATATACAT
                      ____________________________________________________________
consensus             ATAGGCTGTTTCCCCTTTTCCTCCTAATTTTAAGTGTGATATGTCCCCTTATATATACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040K21+          CTCCAGAACTGTATGAACTTCCGGGGAA                                
rJMSF037A17+          CTCCAGAACTGTATGAACTTCCGGGGAATGACAAAT                        
rJMSF033I01+          CTCCAGAACTGTATGAACTTCCGGGGAATGACAAATTATGCAACCCTGTGAAATGGAATT
                      ____________________________________________________________
consensus             CTCCAGAACTGTATGAACTTCCGGGGAATGACAAATTATGCAACCCTGTGAAATGGAATT