Contig 012671:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033F24Sequence660012671 (2)ref|XP_009790218.1|1e-54PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2 [Nicotiana syl634012671 (2)ref|XP_009790218.1|4e-58PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2 [Nicotiana syl

Alignment

This contig is upended


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JMSF033F24-                        GAAGTATTGAGGATGCTCAAATGAGAATGAAAAAGCATCCCTGTAAC
                      ____________________________________________________________
consensus                          GAAGTATTGAGGATGCTCAAATGAGAATGAAAAAGCATCCCTGTAAC
 
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JMSF033F24-           CCGAAAACAGAAGTTAAGAAGGCGCCCAAAACCCTTTGCCTGTCATCTCAAATTCTCAAT
                      ____________________________________________________________
consensus             CCGAAAACAGAAGTTAAGAAGGCGCCCAAAACCCTTTGCCTGTCATCTCAAATTCTCAAT
 
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JMSF033F24-           AACTGAAACCTGAAAATCAATTCTTCCCGATCAATTTAGGGAGGACCAAAACTCATTCTG
                      ____________________________________________________________
consensus             AACTGAAACCTGAAAATCAATTCTTCCCGATCAATTTAGGGAGGACCAAAACTCATTCTG
 
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JMSF033F24-           CCAAGAGCTATTGAAATTGGGTATAATGGATCTTCGCCCCAGGCAGAGACAACACTTCTC
                      ____________________________________________________________
consensus             CCAAGAGCTATTGAAATTGGGTATAATGGATCTTCGCCCCAGGCAGAGACAACACTTCTC
 
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JMSF033F24-           TGGTTTCACCGAAGCTGAGATTCAGAGGATGGACTTCTTACTTAGGGACTCAAAAGAAAA
                      ____________________________________________________________
consensus             TGGTTTCACCGAAGCTGAGATTCAGAGGATGGACTTCTTACTTAGGGACTCAAAAGAAAA
 
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JMSF033F24-           GGGTTTGGACCAAGACTTCTGCAAGAAATTGGCAAAGGTTTTCAACCGGTCCAAAGGTCG
                      ____________________________________________________________
consensus             GGGTTTGGACCAAGACTTCTGCAAGAAATTGGCAAAGGTTTTCAACCGGTCCAAAGGTCG
 
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JMSF033F24-           TGCAGGAAAACCTATTGTGAAGTGGACGGAGGTGCAAAATTGGTTTCAGAATAGGCAGCA
                      ____________________________________________________________
consensus             TGCAGGAAAACCTATTGTGAAGTGGACGGAGGTGCAAAATTGGTTTCAGAATAGGCAGCA
 
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JMSF033F24-           AAACTGCCTCCAAACAGATACTCCAGCTGATGCCTTCAAAGTATTGCCTGATGATGTTCC
                      ____________________________________________________________
consensus             AAACTGCCTCCAAACAGATACTCCAGCTGATGCCTTCAAAGTATTGCCTGATGATGTTCC
 
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JMSF033F24-           AGAACCAAACCATCCAGACAAAGCAAAAGAAAACTCTCCGGTTCAAAAAGTTGTCTACAT
                      ____________________________________________________________
consensus             AGAACCAAACCATCCAGACAAAGCAAAAGAAAACTCTCCGGTTCAAAAAGTTGTCTACAT
 
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JMSF033F24-           CGCTGAAAAAGTTCCAGATCTGACAGAGTTAGAATTCGAAGCTAGATCTTCAAAAGACGG
                      ____________________________________________________________
consensus             CGCTGAAAAAGTTCCAGATCTGACAGAGTTAGAATTCGAAGCTAGATCTTCAAAAGACGG
 
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JMSF033F24-           GGCATGGTATGATATTGATTCTTTTCTCTCTCACAGATATCTAAGCTCAGGGGATGCTGA
rJMSF033F24+                                    TCTCTCACAGATATCTAAGCTCAGGGGATGCTGA
                      ____________________________________________________________
consensus             GGCATGGTATGATATTGATTCTTTTCTCTCTCACAGATATCTAAGCTCAGGGGATGCTGA
 
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JMSF033F24-           AGTTCTTGTAAGA                                               
rJMSF033F24+          AGTTCTTGTAAGATTTATTGGGTTCGGGGAAGAGGAAGATGAATGGATAAACATTAGGAA
                      ____________________________________________________________
consensus             AGTTCTTGTAAGATTTATTGGGTTCGGGGAAGAGGAAGATGAATGGATAAACATTAGGAA
 
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rJMSF033F24+          GTCAGTCCGTGAACGTTCCATTGCTTTGGAGCATTCAGAGTGCAACAAAGTGAGGATTGG
                      ____________________________________________________________
consensus             GTCAGTCCGTGAACGTTCCATTGCTTTGGAGCATTCAGAGTGCAACAAAGTGAGGATTGG
 
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rJMSF033F24+          AGATCGTGTATTGTGCTTTCAGGAGAAAAAGGAGCAAGCAAGATACTTTGAAGCTCAAGT
                      ____________________________________________________________
consensus             AGATCGTGTATTGTGCTTTCAGGAGAAAAAGGAGCAAGCAAGATACTTTGAAGCTCAAGT
 
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rJMSF033F24+          TACTGAAATTCAAAAGAGATTGCATGATATAAGAGGGTGCAGATGCCTATTCACAATTCG
                      ____________________________________________________________
consensus             TACTGAAATTCAAAAGAGATTGCATGATATAAGAGGGTGCAGATGCCTATTCACAATTCG
 
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rJMSF033F24+          ATATGTTCATGATAACACCGAGGAAACGGTTCGGTTGAGGAGATTGTGTTTCCGGCCTAG
                      ____________________________________________________________
consensus             ATATGTTCATGATAACACCGAGGAAACGGTTCGGTTGAGGAGATTGTGTTTCCGGCCTAG
 
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rJMSF033F24+          CATACTGGCCCGCTCAGAGGAGACTTAGTTCCTATATGTATACTAAAGGGCCAAGAGTCA
                      ____________________________________________________________
consensus             CATACTGGCCCGCTCAGAGGAGACTTAGTTCCTATATGTATACTAAAGGGCCAAGAGTCA
 
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rJMSF033F24+          ACCAGAACTCCTCACAAAATGGTCGATATTTTGAACTGTTTAGCACCGCCTGCCTGCTGT
                      ____________________________________________________________
consensus             ACCAGAACTCCTCACAAAATGGTCGATATTTTGAACTGTTTAGCACCGCCTGCCTGCTGT
 
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rJMSF033F24+          CTACATTTGTGTATAACAGACAGCTAAAAGATTTTTAGATTTTGACGTAGAACAGAACTA
                      ____________________________________________________________
consensus             CTACATTTGTGTATAACAGACAGCTAAAAGATTTTTAGATTTTGACGTAGAACAGAACTA
 
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rJMSF033F24+          TTATTAGCAGCTTCATCCGCTAGCATCGCATCCTAGAGCCGTTTTGAGTAATGATAGGTA
                      ____________________________________________________________
consensus             TTATTAGCAGCTTCATCCGCTAGCATCGCATCCTAGAGCCGTTTTGAGTAATGATAGGTA
 
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rJMSF033F24+          GTGTGGGCTTTTTAATTTTGGTTGCAGATGCAAGTAATGATAGTGTGGATTGTGGACTAT
                      ____________________________________________________________
consensus             GTGTGGGCTTTTTAATTTTGGTTGCAGATGCAAGTAATGATAGTGTGGATTGTGGACTAT