Contig 012670:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033B21Sequence667012670 (4)ref|XP_009759597.1|178PREDICTED: uncharacterized protein LOC104212108 [Nicotiana sylvestris]666012670 (4)ref|XP_009759597.1|178PREDICTED: uncharacterized protein LOC104212108 [Nicotiana sylvestris]
JMSF034J11Sequence683012670 (4)ref|XP_009759597.1|171PREDICTED: uncharacterized protein LOC104212108 [Nicotiana sylvestris]726012670 (4)ref|XP_009759597.1|178PREDICTED: uncharacterized protein LOC104212108 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF034J11-                                                                    GGG
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consensus                                                                      GGG
 
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JMSF034J11-           GGAGACGAGAATGGGAGCAAAACTTGGCCATTAAATTAATGGAACAAAGTCTGGTAAGGA
                      ____________________________________________________________
consensus             GGAGACGAGAATGGGAGCAAAACTTGGCCATTAAATTAATGGAACAAAGTCTGGTAAGGA
 
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JMSF034J11-           GGCGATAGAAACAAGGAAGACACGCACAAAATCATTGCTTTCTTCATCTTCTTCTTCTCT
JMSF033B21-             CGATAGAAACAAGGAAGACACGCACAAAATCATTGCTTTCTTCATCTTCTTCTTCTCT
rJMSF034J11+            CGATAGAANCAAGGAAGACACGCACAAAATCATTGCTTTCTTCATCTTCTTCTTCTCT
rJMSF033B21+                                                                TTCTCT
                      ____________________________________________________________
consensus             GGCGATAGAAACAAGGAAGACACGCACAAAATCATTGCTTTCTTCATCTTCTTCTTCTCT
 
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JMSF034J11-           CTCTATCTCCCTCGTCTAACCGCACAAATCCTCTTTCCGTAAATTTGAATTTCGCTCCTC
JMSF033B21-           CTCTATCTCCCTCGTCTAACCGCACAAATCCTCTTTCCGTAAATTTGAATTTCGCTCCTC
rJMSF034J11+          CTCTATCTCCCTCGTCTAACCGCACAAATCCTCTTTCCGTAAATTTGAATTTCGCTCCTC
rJMSF033B21+          CTCNATCTCCCTCGTCTAACCGCACAAATCCTCTTTCCGTAAATTTGAATTTCGCTCCTC
                      ____________________________________________________________
consensus             CTCTATCTCCCTCGTCTAACCGCACAAATCCTCTTTCCGTAAATTTGAATTTCGCTCCTC
 
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JMSF034J11-           GAAATCCATCGCAATGGATTACGCCTCCGCGCTGAGGTTCTCGTCGTCCTCAACCGTCTT
JMSF033B21-           GAAATCCATCGCAATGGATTACGCCTCCGCGCTGAGGTTCTCGTCGTCCTCAACCGTCTT
rJMSF034J11+          GAAATCCATCGCAATGGATTACGCCTCCGCGCTGAGGTTCTCGTCGTCCTCAACCGTCTT
rJMSF033B21+          GAAATCCATCGCAATGGATTACGCCTCCGCGCTGAGGTTCTCGTCGTCCTCAACCGTCTT
                      ____________________________________________________________
consensus             GAAATCCATCGCAATGGATTACGCCTCCGCGCTGAGGTTCTCGTCGTCCTCAACCGTCTT
 
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JMSF034J11-           CCCCAAATTCACTCCCGCATACAACAACAACTTCATTGGAAACAACACGACCTCACTCTT
JMSF033B21-           CCCCAAATTCACTCCCGCATACAACAACAACTTCATTGGAAACAACACGACCTCACTCTT
rJMSF034J11+          CCCCAAATTCACTCCCGCATACAACAACAACTTCATTGGAAACAACACGACCTCACTCTT
rJMSF033B21+          CCCCAAATTCACTCCCGCATACAACAACAACTTCATTGGAAACAACACGACCTCACTCTT
                      ____________________________________________________________
consensus             CCCCAAATTCACTCCCGCATACAACAACAACTTCATTGGAAACAACACGACCTCACTCTT
 
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JMSF034J11-           CTTTCCTCCCAAACCCCTCTCCACGAATCAGTCTACTGATATCGCTACACGGAGATCTCC
JMSF033B21-           CTTTCCTCCCAAACCCCTCTCCACGAATCAGTCTACTGATATCGCTACACGGAGATCTCC
rJMSF034J11+          CTTTCCTCCCAAACCCCTCTCCACGAATCAGTCTACTGATATCGCTACACGGAGATCTCC
rJMSF033B21+          CTTTCCTCCCAAACCCCTCTCCACGAATCAGTCTACTGATATCGCTACACGGAGATCTCC
                      ____________________________________________________________
consensus             CTTTCCTCCCAAACCCCTCTCCACGAATCAGTCTACTGATATCGCTACACGGAGATCTCC
 
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JMSF034J11-           TTCTCAGCTGCGTGCAGTTTCAAATGAAGTAGGTGACATGAATAAGCGAAGAAGCAGTCT
JMSF033B21-           TTCTCAGCTGCGTGCAGTTTCAAATGAAGTAGGTGACATGAATAAGCGAAGAAGCAGTCT
rJMSF034J11+          TTCTCAGCTGCGTGCAGTTTCAAATGAAGTAGGTGACATGAATAAGCGAAGAAGCAGTCT
rJMSF033B21+          TTCTCAGCTGCGTGCAGTTTCAAATGAAGTAGGTGACATGAATAAGCGAAGAAGCAGTCT
                      ____________________________________________________________
consensus             TTCTCAGCTGCGTGCAGTTTCAAATGAAGTAGGTGACATGAATAAGCGAAGAAGCAGTCT
 
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JMSF034J11-           TGAATCTCTTTTTTGCTATGACAAGCCCATACCTGAAGAAATAATAGAGAAACCTATTGG
JMSF033B21-           TGAATCTCTTTTTTGCTATGACAAGCCCATACCTGAAGAAATAATAGAGAAACCTATTGG
rJMSF034J11+          TGAATCTCTTTTTTGCTATGACAAGCCCATACCTGAAGAAATAATAGAGAAACCTATTGG
rJMSF033B21+          TGAATCTCTTTTTTGCTATGACAAGCCCATACCTGAAGAAATAATAGAGAAACCTATTGG
                      ____________________________________________________________
consensus             TGAATCTCTTTTTTGCTATGACAAGCCCATACCTGAAGAAATAATAGAGAAACCTATTGG
 
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JMSF034J11-           ATTGTCTATGACTACAAAGAATATTGGAAATAGCCCCCCTTGTGCTGGTTGTGAAGCAAA
JMSF033B21-           ATTGTCTATGACTACAAAGAATATTGGAAATAGCCCCCCTTGTGCTGGTTGTGAAGCAAA
rJMSF034J11+          ATTGTCTATGACTACAAAGAATATTGGAAATAGCCCCCCTTGTGCTGGTTGTGAAGCAAA
rJMSF033B21+          ATTGTCTATGACTACAAAGAATATTGGAAATAGCCCCCCTTGTGCTGGTTGTGAAGCAAA
                      ____________________________________________________________
consensus             ATTGTCTATGACTACAAAGAATATTGGAAATAGCCCCCCTTGTGCTGGTTGTGAAGCAAA
 
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JMSF034J11-           AGGTGCTGTGTTGTGCAAGACATGCTCTGGTTCAGGCCTATATGTTGACTCTATTATGGA
JMSF033B21-           AGGTGCTGTGTTGTGCAAGACATGCTCTGGTTCAGGCCTATATGTTGACTCTATTATGGA
rJMSF034J11+          AGGTGCTGTGTTGTGCAAGACATGCTCTGGTTCAGGCCTATATGTTGACTCTATTATGGA
rJMSF033B21+          AGGTGCTGTGTTGTGCAAGACATGCTCTGGTTCAGGCCTATATGTTGACTCTATTATGGA
                      ____________________________________________________________
consensus             AGGTGCTGTGTTGTGCAAGACATGCTCTGGTTCAGGCCTATATGTTGACTCTATTATGGA
 
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JMSF034J11-           ATCTCAAGGGATTATTGTCAAAGTTCGATGCTTAGGTTGCGGGGGAACTGGGAACATAAT
JMSF033B21-           ATCTCAAGGGATTATTGTCAAAGTTCGATGCTTAGGTTGCGGGGGAACTGGGAACATAAT
rJMSF034J11+          ATCTCAAGGGATTATTGTCAAAGTTCGATGCTTAGGTTGCGGGGGAACTGGGAACATAAT
rJMSF033B21+          ATCTCAAGGGATTATTGTCAAAGTTCGATGCTTAGGTTGCGGGGGAACTGGGAACATAAT
                      ____________________________________________________________
consensus             ATCTCAAGGGATTATTGTCAAAGTTCGATGCTTAGGTTGCGGGGGAACTGGGAACATAAT
 
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JMSF034J11-           GTGCTCAGACTGTGGCGGCC                                        
JMSF033B21-           GTGCTCAGACTGTGGCGGCCGAGGTCATCAATGATTCCCTGATTACATAAATCTCTCAAC
rJMSF034J11+          GTGCTCAGACTGTGGCGGCCGAGGTCATCAATGATTCCCTGATTACATAAATCTCTCAAC
rJMSF033B21+          GTGCTCAGACTGTGGCGGCCGAGGTCATCAATGATTCCCTGATTACATAAATCTCTCAAC
                      ____________________________________________________________
consensus             GTGCTCAGACTGTGGCGGCCGAGGTCATCAATGATTCCCTGATTACATAAATCTCTCAAC
 
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JMSF033B21-           ACAGGA                                                      
rJMSF034J11+          ACAGGACTTTTTTGTGCCATGAGTTCATGATACAATTGAACCATGGTATGGATACAAAT 
rJMSF033B21+          ACAGGACTTTTTTGTGCCATGAGTTCATGATACAATTGAACCATGGTATGGATACAAATT
                      ____________________________________________________________
consensus             ACAGGACTTTTTTGTGCCATGAGTTCATGATACAATTGAACCATGGTATGGATACAAATT