Contig 012663:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007G10Sequence422003519 (14)ref|XP_008230684.1|127PREDICTED: uncharacterized protein LOC103329933 [Prunus mume]741012663 (2)ref|NP_001265964.1|9e-55Hop-interacting protein THI043 [Solanum lycopersicum] gb|AEW69804.1| Hop-interac
JMSF032C13Sequence603003519 (14)ref|NP_001265964.1|2e-58Hop-interacting protein THI043 [Solanum lycopersicum] gb|AEW69804.1| Hop-interac729012663 (2)ref|NP_001265964.1|1e-53Hop-interacting protein THI043 [Solanum lycopersicum] gb|AEW69804.1| Hop-interac

Alignment

This contig is upended


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rJMSF007G10+                                      CGAGATCAATCCAACTAATTTTTGAATCGCTA
                      ____________________________________________________________
consensus                                         CGAGATCAATCCAACTAATTTTTGAATCGCTA
 
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rJMSF007G10+          ATGCAGTTTAGGTTGTGATGAGATTAGCATTCAATAGTAAGTTGAATAATTTGAAATTCA
rJMSF032C13+                                                             TGAAATTCA
                      ____________________________________________________________
consensus             ATGCAGTTTAGGTTGTGATGAGATTAGCATTCAATAGTAAGTTGAATAATTTGAAATTCA
 
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rJMSF007G10+          TTCTGGAGTTTGTTGTTTCTTGCTGAAATTTGGATTTTGGTACTCTCTGTTTGAAATGAA
rJMSF032C13+          TTCTGGAGTTTGTTGTTTCTTGCTGAAATTTGGATTTTGGTACTCTCTGTTTGAAATGAA
                      ____________________________________________________________
consensus             TTCTGGAGTTTGTTGTTTCTTGCTGAAATTTGGATTTTGGTACTCTCTGTTTGAAATGAA
 
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rJMSF007G10+          CCATAGAGGCATGTAACTAGCAATACGTGGATTTTGATCCTACTGGTATCTTGGGATCCC
rJMSF032C13+          CCATAGAGGCATGTAACTAGCAATACGTGGATTTTGATCCTACTGGTATCTTGGGATCCC
                      ____________________________________________________________
consensus             CCATAGAGGCATGTAACTAGCAATACGTGGATTTTGATCCTACTGGTATCTTGGGATCCC
 
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rJMSF007G10+          AGGCGACAAACCAAACGTCTACAACCATGCAGGAAGATAAAATATTTGAGGGATTGCCAT
rJMSF032C13+          AGGCGACAAACCAAACGTCTACAACCATGCAGGAAGATAAAATATTTGAGGGATTGCCAT
                      ____________________________________________________________
consensus             AGGCGACAAACCAAACGTCTACAACCATGCAGGAAGATAAAATATTTGAGGGATTGCCAT
 
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rJMSF007G10+          TCTGTTGTTGCTTCTGAATATGCTTTATTCTATATTCTATTGCATACATTCGAACTGAAT
rJMSF032C13+          TCTGTTGTTGCTTCTGAATATGCTTTATTCTATATTCTATTGCATACATTCGAACTGAAT
                      ____________________________________________________________
consensus             TCTGTTGTTGCTTCTGAATATGCTTTATTCTATATTCTATTGCATACATTCGAACTGAAT
 
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rJMSF007G10+          GTTGTCTGTTGTCTCAGGACCTGCATGCTCTGAATCAGGAAAATTTGCAAATGGACTATG
rJMSF032C13+          GTTGTCTGTTGTCTCAGGACCTGCATGCTCTGAATCAGGAAAATTTGCAAATGGACTATG
                      ____________________________________________________________
consensus             GTTGTCTGTTGTCTCAGGACCTGCATGCTCTGAATCAGGAAAATTTGCAAATGGACTATG
 
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rJMSF007G10+          ACAAAAGAAGTAACAATGATCTGCTCGAGTATCTTCGGTTTTTGGAACCTGATATGGTGA
rJMSF032C13+          ACAAAAGAAGTAACAATGATCTGCTCGAGTATCTTCGGTTTTTGGAACCTGATATGGTGA
                      ____________________________________________________________
consensus             ACAAAAGAAGTAACAATGATCTGCTCGAGTATCTTCGGTTTTTGGAACCTGATATGGTGA
 
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rJMSF007G10+          TTGAACTTTCTAAGCCATCCTCGTTTGAAGTGGAGGAAGTTATTCATCAATTAGCACAGA
rJMSF032C13+          TTGAACTTTCTAAGCCATCCTCGTTTGAAGTGGAGGAAGTTATTCATCAATTAGCACAGA
                      ____________________________________________________________
consensus             TTGAACTTTCTAAGCCATCCTCGTTTGAAGTGGAGGAAGTTATTCATCAATTAGCACAGA
 
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rJMSF007G10+          ACATACTGCGAATATTTTTCAAAGAAGAGACGGACTCTGAGTCCGAAGAAAGCATATTGT
rJMSF032C13+          ACATACTGCGAATATTTTTCAAAGAAGAGACGGACTCTGAGTCCGAAGAAAGCATATTGT
                      ____________________________________________________________
consensus             ACATACTGCGAATATTTTTCAAAGAAGAGACGGACTCTGAGTCCGAAGAAAGCATATTGT
 
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rJMSF007G10+          TTGAAGCTGCTGCAACAAACCGCCAGACTGATGCCGAATCATGTGACACAATAGGCACAT
rJMSF032C13+          TTGAAGCTGCTGCAACAAACCGCCAGACTGATGCCGAATCATGTGACACAATAGGCACAT
                      ____________________________________________________________
consensus             TTGAAGCTGCTGCAACAAACCGCCAGACTGATGCCGAATCATGTGACACAATAGGCACAT
 
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rJMSF007G10+          CACGGGATTACTTGGCAAAGCTTCTGTTCTGGTGTATGTTACTTGGCCATCACTTGAGAG
rJMSF032C13+          CACGGGATTACTTGGCAAAGCTTCTGTTCTGGTGTATGTTACTTGGCCATCACTTGAGAG
                      ____________________________________________________________
consensus             CACGGGATTACTTGGCAAAGCTTCTGTTCTGGTGTATGTTACTTGGCCATCACTTGAGAG
 
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rJMSF007G10+          GCTTGGAGAACAGATTACATTTAAGTTGTGTTGTTGGACTATTGTAAAG           
rJMSF032C13+          GCTTGGAGAACAGATTACATTTAAGTTGTGTTGTTGGACTATTGTAAAGTTAATCAAGGA
                      ____________________________________________________________
consensus             GCTTGGAGAACAGATTACATTTAAGTTGTGTTGTTGGACTATTGTAAAGTTAATCAAGGA
 
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rJMSF032C13+          TAAACATGAATGTATATCACTCTTCCTTCCAAATTTTGTGTTGTTTATATATCGAGAAAT
                      ____________________________________________________________
consensus             TAAACATGAATGTATATCACTCTTCCTTCCAAATTTTGTGTTGTTTATATATCGAGAAAT