Contig 012661:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030L06Sequence633002310 (3)ref|XP_006344996.1|2e-67PREDICTED: anaphase-promoting complex subunit 8-like [Solanum tuberosum]746012661 (2)gb|EYU42516.1|1e-92hypothetical protein MIMGU_mgv1a003537mg [Erythranthe guttata]
JMSF034J20Sequence702002310 (3)ref|XP_006344996.1|2e-119PREDICTED: anaphase-promoting complex subunit 8-like [Solanum tuberosum]626012661 (2)gb|EYU42516.1|2e-65hypothetical protein MIMGU_mgv1a003537mg [Erythranthe guttata]

Alignment

This contig is upended


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rJMSF030L06+                                           TTAGGNCAAGCATATGAAATGATGGGA
                      ____________________________________________________________
consensus                                              TTAGGNCAAGCATATGAAATGATGGGA
 
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rJMSF030L06+          ATGCCCTTATATGCACNTCATTATTTTAAGAAGTCGGTGTTCCTGCAGCCAAGTGATTCT
                      ____________________________________________________________
consensus             ATGCCCTTATATGCACNTCATTATTTTAAGAAGTCGGTGTTCCTGCAGCCAAGTGATTCT
 
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rJMSF034J20+                   ATCGCCATGGCCCAATGTTACAAAACAGAGCAGCTTCATATGCTCGAGGAG
rJMSF030L06+          AGACTGTGGATCGCCATGGCCCAATGTTACAAAACAGAGCAGCTTCATATGCTCGAGGAG
                      ____________________________________________________________
consensus             AGACTGTGGATCGCCATGGCCCAATGTTACAAAACAGAGCAGCTTCATATGCTCGAGGAG
 
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rJMSF034J20+          GCAATCAAATGTTATGAAAGGGCAGCAAAATGCAATGATCGGGAAGCAATAGCACTTCAT
rJMSF030L06+          GCAATCAAATGTTATGAAAGGGCAGCAAAATGCAATGATCGGGAAGCAATAGCACTTCAT
                      ____________________________________________________________
consensus             GCAATCAAATGTTATGAAAGGGCAGCAAAATGCAATGATCGGGAAGCAATAGCACTTCAT
 
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rJMSF034J20+          GAGCTAGCGAAATTGCATTCTGAACTTGGACGTTCTGAAGAAGCAGCATTTTACTNCCAG
rJMSF030L06+          GAGCTAGCGAAATTGCATTCTGAACTTGGACGTTCTGAAGAAGCAGCATTTTACTACCAG
                      ____________________________________________________________
consensus             GAGCTAGCGAAATTGCATTCTGAACTTGGACGTTCTGAAGAAGCAGCATTTTACTACCAG
 
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rJMSF034J20+          AAGGATTTGGAGAAGATGGATGCTGAGGACAGGGAAGCACCCAACATGGNTGAGGCTTTA
rJMSF030L06+          AAGGATTTGGAGAAGATGGATGCTGAGGACAGGGAAGCACCCAACATGGTTGAGGCTTTA
                      ____________________________________________________________
consensus             AAGGATTTGGAGAAGATGGATGCTGAGGACAGGGAAGCACCCAACATGGTTGAGGCTTTA
 
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rJMSF034J20+          CTGTTTCTTGCCAGACACTGCAAAACTCAAAAGAGATTTGAAGAAGCAGAGGTTTATTGT
rJMSF030L06+          CTGTTTCTTGCCAGACACTGCAAAACTCAAAAGAGATTTGAAGAAGCAGAGGTTTATTGT
                      ____________________________________________________________
consensus             CTGTTTCTTGCCAGACACTGCAAAACTCAAAAGAGATTTGAAGAAGCAGAGGTTTATTGT
 
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rJMSF034J20+          ACCCGGCTTCTTGACTGTGCTGGTCCTGAGAAGGAAACAGCAAAAAGTCTGCTTCGAGGA
rJMSF030L06+          ACCCGGCTTCTTGACTGTGCTGGTCCTGAGAAGGAAACAGCAAAAAGTCTGCTTCGAGGA
                      ____________________________________________________________
consensus             ACCCGGCTTCTTGACTGTGCTGGTCCTGAGAAGGAAACAGCAAAAAGTCTGCTTCGAGGA
 
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rJMSF034J20+          ATAAGACATGCAAGGGANGTCGANCACTTTCCACATTAAAATTCCTANTTGTCACNGAAT
rJMSF030L06+          ATAAGACATGCAAGGGATGTCGAACACTTTCCACATTAAAATTCCTAATTGTCACTGAAT
                      ____________________________________________________________
consensus             ATAAGACATGCAAGGGATGTCGAACACTTTCCACATTAAAATTCCTAATTGTCACTGAAT
 
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rJMSF034J20+          TGCAAAAGAAATTATCTTGAAGCCGAGACCAGCTTCTAAGTTTATGGATGTGGAGATAGA
rJMSF030L06+          TGCAAAAGAAATTATCTTGAAGCCGAGACCAGCTTCTAAGTTTATGGATGTGGAGATAGA
                      ____________________________________________________________
consensus             TGCAAAAGAAATTATCTTGAAGCCGAGACCAGCTTCTAAGTTTATGGATGTGGAGATAGA
 
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rJMSF034J20+          GTGAGAAGCCAGGGGTGGTCAAATGGACCATCAACTCCTANAGTCTGAAACCAGAAAATT
rJMSF030L06+          GTGAGAAGCCAGGGGTGGTCAAATGGACCATCAACTACTATAGTCTGAAACCAGAAAATT
                      ____________________________________________________________
consensus             GTGAGAAGCCAGGGGTGGTCAAATGGACCATCAACTCCTATAGTCTGAAACCAGAAAATT
 
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rJMSF034J20+          TTTTGTGTGTATTTATTCTGTTTCAGCTNATCAACTNAGAAACATTTNTTTCTTGTCTCA
rJMSF030L06+          TTTTGTGTGTATTTATTCTGTTTCAGCTTATCAATTTAGAAACATTTTTTTCTTGTCT-T
                      ____________________________________________________________
consensus             TTTTGTGTGTATTTATTCTGTTTCAGCTTATCAATTTAGAAACATTTTTTTCTTGTCTCT
 
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rJMSF034J20+          ACTGTTGTTGTATTGGTGATATTGTTGGAAGAG                           
rJMSF030L06+          ACTGTTGTTGTATTGGTGATATTGTTGGAAGAGTTAGAAGCCAATAAACTGTACTCTCTT
                      ____________________________________________________________
consensus             ACTGTTGTTGTATTGGTGATATTGTTGGAAGAGTTAGAAGCCAATAAACTGTACTCTCTT