Contig 012658:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030C23Sequence627001387 (33)gb|ACB05671.1|1e-51chloroplast ferredoxin [Capsicum annuum]579012658 (2)gb|ADV02768.1|3e-14putative low temperature and salt responsive protein isoform 1 [Ipomoea batatas
JMSF031L13Sequence441012658 (2)

Alignment

This contig is upended


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JMSF031L13+                                       TTTTTTTTTTAAAACATATACTAGTATTTATC
                      ____________________________________________________________
consensus                                         TTTTTTTTTTAAAACATATACTAGTATTTATC
 
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JMSF031L13+           ATAAAAATATAAAGCCGTGTCACAGCACGTTACAAATGAAGTAGACACTACG-TAGGAAA
rJMSF030C23-                                      GTTACANATGAAGTAGACACTACGTTAGGANA
                      ____________________________________________________________
consensus             ATAAAAATATAAAGCCGTGTCACAGCACGTTACAAATGAAGTAGACACTACGTTAGGAAA
 
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JMSF031L13+           ATGACCCTCACAATTATCATAATCAACTACTCTTCAACTTTGGCATTTGGCAACGTAACA
rJMSF030C23-          ATGACCCTCACAATTATCATAATCAACTACTCTTCAACTTTGGCATTTGGCAACGTAACA
                      ____________________________________________________________
consensus             ATGACCCTCACAATTATCATAATCAACTACTCTTCAACTTTGGCATTTGGCAACGTAACA
 
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JMSF031L13+           GCACTTCTAGAACAGGAGAATAAACTAAAAATGGTGAAAACCAAACAAGTAAAATAAAAT
rJMSF030C23-          GCACTTCTAGAACNGGAGAATAAACTAAAAATGGTGAAAACCAAACAAGTAAAATAAAAT
                      ____________________________________________________________
consensus             GCACTTCTAGAACAGGAGAATAAACTAAAAATGGTGAAAACCAAACAAGTAAAATAAAAT
 
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JMSF031L13+           CCGACGTAGGCGTGACCACATCGAGTCATTAACAGTGTTCACAAAACAAATAATGGCGAC
rJMSF030C23-          CCGACGTAGGCGTGACCACATCGAGTCATTAACAGTGTTCACAAAACAAATAATGGCGAC
                      ____________________________________________________________
consensus             CCGACGTAGGCGTGACCACATCGAGTCATTAACAGTGTTCACAAAACAAATAATGGCGAC
 
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JMSF031L13+           AATGACATAATTAGTATATATAACACTCCAATAATTATTGACACAAATTTAATGATTAAT
rJMSF030C23-          AATGACATAATTAGTATATATAACACTCCAATAATTATTGACACAAATTTAATGATTAAT
                      ____________________________________________________________
consensus             AATGACATAATTAGTATATATAACACTCCAATAATTATTGACACAAATTTAATGATTAAT
 
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JMSF031L13+           AAAATGCATGGCCACCTTCACATCGATCCCTACCTGATAGCTTAGAAAGTTTAATTTATC
rJMSF030C23-          AAAATGCATGGCCACCTTCACATCGATCTCTACCTGATAGCTTAGAAAGTTTAATTTATC
                      ____________________________________________________________
consensus             AAAATGCATGGCCACCTTCACATCGATCTCTACCTGATAGCTTAGAAAGTTTAATTTATC
 
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JMSF031L13+           ACTTGGTGATGATCCAAATAGCATAGATAATTCCAGGGATGTACCCAAAC          
rJMSF030C23-          ACTTGGTGATGATCCAAATAGCATAGATAATTCCAGGGATGTACCCAAACAGAGTCAGCA
                      ____________________________________________________________
consensus             ACTTGGTGATGATCCAAATAGCATAGATAATTCCAGGGATGTACCCAAACAGAGTCAGCA
 
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rJMSF030C23-          AACAGCAAATCCAAAACTCAATCTTGCAGCCAAACTTGAGGAAGACACCTAGGGGAGGCA
                      ____________________________________________________________
consensus             AACAGCAAATCCAAAACTCAATCTTGCAGCCAAACTTGAGGAAGACACCTAGGGGAGGCA
 
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rJMSF030C23-          ACAAGATAGCCAGGAGAATGTCTACACAAGTGGCTGTGCTGCCCATTTTTATGATCAACT
                      ____________________________________________________________
consensus             ACAAGATAGCCAGGAGAATGTCTACACAAGTGGCTGTGCTGCCCATTTTTATGATCAACT
 
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rJMSF030C23-          CAATGAAGAAACCGAAAAGAAAAGGAAGTAAATTAAAGTAACCCCTTTAATTTGGTAGAT
                      ____________________________________________________________
consensus             CAATGAAGAAACCGAAAAGAAAAGGAAGTAAATTAAAGTAACCCCTTTAATTTGGTAGAT