| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF028M10 | Sequence | 646 | 009532 (3) | ref|XP_009628015.1| | 2e-56 | PREDICTED: putative phagocytic receptor 1b isoform X1 [Nicotiana tomentosiformi | 738 | 012653 (3) | gb|KHG09925.1| | 6e-83 | Putative phagocytic receptor 1b [Gossypium arboreum] |
| JMSF036I05 | Sequence | 646 | 009532 (3) | ref|XP_009628015.1| | 4e-62 | PREDICTED: putative phagocytic receptor 1b isoform X1 [Nicotiana tomentosiformi | 709 | 012653 (3) | gb|KHG09925.1| | 1e-83 | Putative phagocytic receptor 1b [Gossypium arboreum] |
| JMSF046D06 | Sequence | 762 | 009532 (3) | ref|XP_009628015.1| | 6e-54 | PREDICTED: putative phagocytic receptor 1b isoform X1 [Nicotiana tomentosiformi | 695 | 012653 (3) | ref|XP_009782694.1| | 6e-60 | PREDICTED: putative phagocytic receptor 1b isoform X2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF036I05+ GTGGATATTCTTGCCTCGCCCTCACTATTATTTG
rJMSF028M10+ TCGCCCTCACTATTATTTG
____________________________________________________________
consensus GTGGATATTCTTGCCTCGCCCTCACTATTATTTG
. : . : . : . : . : . :
rJMSF036I05+ GTGGGATTCTCGGGAAGGGTATGGGGTTTGAGTTTCAAGCCCCGTGTCGCACCACAAAGT
rJMSF046D06+ CCCCGTGTCGCACCACAAAGT
rJMSF028M10+ GTGGGATTCTCGGGAAGGGTATGGGGTTTGAGTTTCAAGCCCCGTGTCGCACCACAAAGT
____________________________________________________________
consensus GTGGGATTCTCGGGAAGGGTATGGGGTTTGAGTTTCAAGCCCCGTGTCGCACCACAAAGT
. : . : . : . : . : . :
rJMSF036I05+ GTCCTAGAGATATTCCACCGTTGCGGTGGTACAGGAGTGCGATTATTCAGATGGCATTAG
rJMSF046D06+ GTCCTAGAGATATTCCACCGTTGCGGTGGTACAGGAGTGCGATTATTCAGATGGCATTAG
rJMSF028M10+ GTCCTAGAGATATTCCACCGTTGCGGTGGTACAGGAGTGCGATTATTCAGATGGCATTAG
____________________________________________________________
consensus GTCCTAGAGATATTCCACCGTTGCGGTGGTACAGGAGTGCGATTATTCAGATGGCATTAG
. : . : . : . : . : . :
rJMSF036I05+ CGGGATTTCTGCC-TTTTTTCGTTATGTACATCGAGCTTTATTATGTATTTGCCAGCGTG
rJMSF046D06+ CGGGATTTCTGCCTTTTTTTCGTTATGTACATCGAGCTTTATTATGTATTTGCCAGCGTG
rJMSF028M10+ CGGGATTTCTGCC-TTTTTTCGTTATGTACATCGAGCTTTATTATGTATTTGCCAGCGTG
____________________________________________________________
consensus CGGGATTTCTGCC-TTTTTTCGTTATGTACATCGAGCTTTATTATGTATTTGCCAGCGTG
. : . : . : . : . : . :
rJMSF036I05+ TGGGGCCACCGGGTGTACACGATATATGGCGTCCTCTTCGTTGTCTTCATACTTCTTTTA
rJMSF046D06+ TGGGGCCACCGGGTGTACACGATATATGGCGTCCTCTTCGTTGTCTTCATACTTCTTTTA
rJMSF028M10+ TGGGGCCACCGGGTGTACACGATATATGGCGTCCTCTTCGTTGTCTTCATACTTCTTTTA
____________________________________________________________
consensus TGGGGCCACCGGGTGTACACGATATATGGCGTCCTCTTCGTTGTCTTCATACTTCTTTTA
. : . : . : . : . : . :
rJMSF036I05+ ACTGTAACTGCTCTCGTGTCCATTGCTCTCACTTACTTCCAGCTCGTTGCTGAAGATCAC
rJMSF046D06+ ACTGTAACTGCTCTCGTGTCCATTGCTCTCACTTACTTCCAGCTCGTTGCTGAAGATCAC
rJMSF028M10+ ACTGTAACTGCTCTCGTGTCCATTGCTCTCACTTACTTCCAGCTCGTTGCTGAAGATCAC
____________________________________________________________
consensus ACTGTAACTGCTCTCGTGTCCATTGCTCTCACTTACTTCCAGCTCGTTGCTGAAGATCAC
. : . : . : . : . : . :
rJMSF036I05+ AAATGGTGGTGGAGGTCGTTTCTTTGTGGTGGATCTACCGGGCTATACATATTCGGCTAT
rJMSF046D06+ AAATGGTGGTGGAGGTCGTTTCTTTGTGGTGGATCTACCGGGCTATACATATTCGGCTAT
rJMSF028M10+ AAATGGTGGTGGAGGTCGTTTCTTTGTGGTGGATCTACCGGGCTATACATATTCGGCTAT
____________________________________________________________
consensus AAATGGTGGTGGAGGTCGTTTCTTTGTGGTGGATCTACCGGGCTATACATATTCGGCTAT
. : . : . : . : . : . :
rJMSF036I05+ GCTATATACTACTACATGCAACGATCAAACATGAAAGGCTTCATGCAGATCTCTTTCTTC
rJMSF046D06+ GCTATATACTACTACATGCAACGATCAAACATGAAAGGCTTCATGCAGATCTCTTTCTTC
rJMSF028M10+ GCTATATACTACTACATGCAACGATCAAACATGAAAGGCTTCATGCAGATCTCTTTCTTC
____________________________________________________________
consensus GCTATATACTACTACATGCAACGATCAAACATGAAAGGCTTCATGCAGATCTCTTTCTTC
. : . : . : . : . : . :
rJMSF036I05+ TTCGGGTACATGGCATGTATTAGCTATGGCGTCTTTCTCATGTTGGGCGCGGTGGGGTAT
rJMSF046D06+ TTCGGGTACATGGCATGTATTAGCTATGGCGTCTTTCTCATGTTGGGCGCGGTGGGGTAT
rJMSF028M10+ TTCGGGTACATGGCATGTATTAGCTATGGCGTCTTTCTCATGTTGGGCGCGGTGGGGTAT
____________________________________________________________
consensus TTCGGGTACATGGCATGTATTAGCTATGGCGTCTTTCTCATGTTGGGCGCGGTGGGGTAT
. : . : . : . : . : . :
rJMSF036I05+ CGTGCCTCGTTGCTATTTGTTCGTCATATTTACAGCTCTATCAAATGTGAGTAGTTGCCA
rJMSF046D06+ CGTGCCTCGTTGCTATTTGTTCGTCATATTTACAGCTCTATCAAATGTGAGTAGTTGCCA
rJMSF028M10+ CGTGCCTCGTTGCTATTTGTTCGTCATATTTACAGCTCTATCAAATGTGAGTAGTTGCCA
____________________________________________________________
consensus CGTGCCTCGTTGCTATTTGTTCGTCATATTTACAGCTCTATCAAATGTGAGTAGTTGCCA
. : . : . : . : . : . :
rJMSF036I05+ TACTTTGGGTCTTGGTTTTGTAGAGTCAATCAGCTGGTTTGGTTGAAGCCTTGAAATTGT
rJMSF046D06+ TACTTTGGGTCTTGGTTTTGTAGAGTCAATCAGCTGGTTTGGTTGAAGCCTTGAAATTGT
rJMSF028M10+ TACTTTGGGTCTTGGTTTTGTAGAGTCAATCAGCTGGTTTGGTTGAAGCCTTGAAATTGT
____________________________________________________________
consensus TACTTTGGGTCTTGGTTTTGTAGAGTCAATCAGCTGGTTTGGTTGAAGCCTTGAAATTGT
. : . : . : . : . : . :
rJMSF036I05+ TAAAAGGGTGAAGAAGTGGAGTATTGGGTGTATACTTTGGACTAACAAATATACAGAGAT
rJMSF046D06+ TAAAAGGGTGAAGAAGTGGAGTATTGGGTGTATACTTTGGACTAACAAATATACAGAGAT
rJMSF028M10+ TAAAAGGGTGAAGAAGTGGAGTATTGGGTGTATACTTTGGACTAACAAATATACAGAGAT
____________________________________________________________
consensus TAAAAGGGTGAAGAAGTGGAGTATTGGGTGTATACTTTGGACTAACAAATATACAGAGAT
. : . : . : . : . : . :
rJMSF036I05+ TGGGGGTAGT
rJMSF046D06+ TGGGGGTAGTTGAAGTATGTTAATACTCATAAATGATACTCTCTTTGTCCATT
rJMSF028M10+ TGGGGGTAGTTGAAGTATGTTAATACTCATAAATGATACTCTCTTTGTCCATTTGTCTAA
____________________________________________________________
consensus TGGGGGTAGTTGAAGTATGTTAATACTCATAAATGATACTCTCTTTGTCCATTTGTCTAA