Contig 012651:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028C02Sequence600012651 (2)ref|XP_009588357.1|7e-69PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Nicotian700012651 (2)ref|XP_009588357.1|2e-94PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Nicotian

Alignment

This contig is upended


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JMSF028C02- GGCCGTCGTTTCTCCGGTCCGCTTCTATCCAGAAGTTCTCGGCTGG
                      ____________________________________________________________
consensus GGCCGTCGTTTCTCCGGTCCGCTTCTATCCAGAAGTTCTCGGCTGG
 
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JMSF028C02- GAGCGAAGAGTCGAATGAAATGGCCGCTCACTGCGTCTCCTCCGTCCAGGCTGCCACCTC
                      ____________________________________________________________
consensus GAGCGAAGAGTCGAATGAAATGGCCGCTCACTGCGTCTCCTCCGTCCAGGCTGCCACCTC
 
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JMSF028C02- CGGAATCAACCAATTCCGTCACAGAAATTCCATCCAACTCGCAGCGGAGGAATTGAAGTT
                      ____________________________________________________________
consensus CGGAATCAACCAATTCCGTCACAGAAATTCCATCCAACTCGCAGCGGAGGAATTGAAGTT
 
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JMSF028C02- TCCCTACCTCGGTACTCCCACCGGAATTTCACTGCAGCCCTTCAAGTTCAGACCCTTTTT
rJMSF028C02+ CCGGAATTTCACTGCAGCCCTTCAAGTTCAGACCCTTTTT
                      ____________________________________________________________
consensus TCCCTACCTCGGTACTCCCACCGGAATTTCACTGCAGCCCTTCAAGTTCAGACCCTTTTT
 
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JMSF028C02- CTCGAAACATTCACCCATCAAAGCCACAATCTCTCTCAGCCTTCCAACTTCGAATGCGGA
rJMSF028C02+ CTCGAAACATTCACCCATCAAAGCCACAATCTCTCTCAGCCTTCCAACTTCGAATGCGGA
                      ____________________________________________________________
consensus CTCGAAACATTCACCCATCAAAGCCACAATCTCTCTCAGCCTTCCAACTTCGAATGCGGA
 
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JMSF028C02- CGCAGTTGTTTCTCTAGAGAATGTTCCCAAATGGTCATCAAAGGCGATTAGGTCGTTTGC
rJMSF028C02+ CGCAGTTGTTTCTCTAGAGAATGTTCCCAAATGGTCATCAAAGGCGATTAGGTCGTTTGC
                      ____________________________________________________________
consensus CGCAGTTGTTTCTCTAGAGAATGTTCCCAAATGGTCATCAAAGGCGATTAGGTCGTTTGC
 
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JMSF028C02- AATGGCTGAATTGGAAGCCAGGAAGATTAAGTATCTCACAACAGGGACAGAAGCTCTAGT
rJMSF028C02+ AATGGCTGAATTGGAAGCCAGGAAGATTAAGTATCTCACAACAGGGACAGAAGCTCTAGT
                      ____________________________________________________________
consensus AATGGCTGAATTGGAAGCCAGGAAGATTAAGTATCTCACAACAGGGACAGAAGCTCTAGT
 
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JMSF028C02- CATGGGCATTTTAAATGAGGGGACTAATTTTGCTTCCAAATTTTTGTGGTCCATGGGTAT
rJMSF028C02+ CATGGGCATTTTAAATGAGGGGACTAATTTTGCTTCCAAATTTTTGTGGTCCATGGGTAT
                      ____________________________________________________________
consensus CATGGGCATTTTAAATGAGGGGACTAATTTTGCTTCCAAATTTTTGTGGTCCATGGGTAT
 
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JMSF028C02- TACCCTTTTCAAAGTGCGTGAAGAAACAATCAGGATTTGCGGGGAAGCTAACTTTTTTAA
rJMSF028C02+ TACCCTTTTCAAAGTGCGTGAAGAAACAATCAGGATTTGCGGGGAAGCTAACTTTTTTAA
                      ____________________________________________________________
consensus TACCCTTTTCAAAGTGCGTGAAGAAACAATCAGGATTTGCGGGGAAGCTAACTTTTTTAA
 
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JMSF028C02- TTTCAGTCCTGAACATCCCCCCTTGACCGAAGATGCGCAAAAGGCCCTTGATTGGGCTCT
rJMSF028C02+ TTTCAGTCCTGAACATCCCCCCTTGACCGAAGATGCGCAAAAGGCCCTTGATTGGGCTCT
                      ____________________________________________________________
consensus TTTCAGTCCTGAACATCCCCCCTTGACCGAAGATGCGCAAAAGGCCCTTGATTGGGCTCT
 
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JMSF028C02- TAATGAGAAGGTCA
rJMSF028C02+ TAATGAGAAGGTCAAAGAAGGAGATGGCGGAGAGATTACAACTATTCATTTACTACTTGG
                      ____________________________________________________________
consensus TAATGAGAAGGTCAAAGAAGGAGATGGCGGAGAGATTACAACTATTCATTTACTACTTGG
 
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rJMSF028C02+ AGTTTGGTCACAAGAGGGGTCACCGGGTTACAAGGTGTTGGCTACCCTTGGGTTCAACGA
                      ____________________________________________________________
consensus AGTTTGGTCACAAGAGGGGTCACCGGGTTACAAGGTGTTGGCTACCCTTGGGTTCAACGA
 
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rJMSF028C02+ CGAAAAAGCTCAAGAGCTGAAGGCCTTAATTTCGAAACCTGGTTTTAAGGAGGACTAGTA
                      ____________________________________________________________
consensus CGAAAAAGCTCAAGAGCTGAAGGCCTTAATTTCGAAACCTGGTTTTAAGGAGGACTAGTA
 
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rJMSF028C02+ GAGCTTGTAGACACTCAAGGCTGCCATTAAAGTTGATTCTTTTAATCCATAATGCTACAC
                      ____________________________________________________________
consensus GAGCTTGTAGACACTCAAGGCTGCCATTAAAGTTGATTCTTTTAATCCATAATGCTACAC
 
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rJMSF028C02+ TTTGAATTCATGTTAAATATGGATGAATATTGTGTTATACTCTGTAATTGGAAGAACATA
                      ____________________________________________________________
consensus TTTGAATTCATGTTAAATATGGATGAATATTGTGTTATACTCTGTAATTGGAAGAACATA