clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF028C02 | Sequence | 600 | 012651 (2) | ref|XP_009588357.1| | 7e-69 | PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Nicotian | 700 | 012651 (2) | ref|XP_009588357.1| | 2e-94 | PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Nicotian |
This contig is upended
. : . : . : . : . : . :
JMSF028C02- GGCCGTCGTTTCTCCGGTCCGCTTCTATCCAGAAGTTCTCGGCTGG
____________________________________________________________
consensus GGCCGTCGTTTCTCCGGTCCGCTTCTATCCAGAAGTTCTCGGCTGG
. : . : . : . : . : . :
JMSF028C02- GAGCGAAGAGTCGAATGAAATGGCCGCTCACTGCGTCTCCTCCGTCCAGGCTGCCACCTC
____________________________________________________________
consensus GAGCGAAGAGTCGAATGAAATGGCCGCTCACTGCGTCTCCTCCGTCCAGGCTGCCACCTC
. : . : . : . : . : . :
JMSF028C02- CGGAATCAACCAATTCCGTCACAGAAATTCCATCCAACTCGCAGCGGAGGAATTGAAGTT
____________________________________________________________
consensus CGGAATCAACCAATTCCGTCACAGAAATTCCATCCAACTCGCAGCGGAGGAATTGAAGTT
. : . : . : . : . : . :
JMSF028C02- TCCCTACCTCGGTACTCCCACCGGAATTTCACTGCAGCCCTTCAAGTTCAGACCCTTTTT
rJMSF028C02+ CCGGAATTTCACTGCAGCCCTTCAAGTTCAGACCCTTTTT
____________________________________________________________
consensus TCCCTACCTCGGTACTCCCACCGGAATTTCACTGCAGCCCTTCAAGTTCAGACCCTTTTT
. : . : . : . : . : . :
JMSF028C02- CTCGAAACATTCACCCATCAAAGCCACAATCTCTCTCAGCCTTCCAACTTCGAATGCGGA
rJMSF028C02+ CTCGAAACATTCACCCATCAAAGCCACAATCTCTCTCAGCCTTCCAACTTCGAATGCGGA
____________________________________________________________
consensus CTCGAAACATTCACCCATCAAAGCCACAATCTCTCTCAGCCTTCCAACTTCGAATGCGGA
. : . : . : . : . : . :
JMSF028C02- CGCAGTTGTTTCTCTAGAGAATGTTCCCAAATGGTCATCAAAGGCGATTAGGTCGTTTGC
rJMSF028C02+ CGCAGTTGTTTCTCTAGAGAATGTTCCCAAATGGTCATCAAAGGCGATTAGGTCGTTTGC
____________________________________________________________
consensus CGCAGTTGTTTCTCTAGAGAATGTTCCCAAATGGTCATCAAAGGCGATTAGGTCGTTTGC
. : . : . : . : . : . :
JMSF028C02- AATGGCTGAATTGGAAGCCAGGAAGATTAAGTATCTCACAACAGGGACAGAAGCTCTAGT
rJMSF028C02+ AATGGCTGAATTGGAAGCCAGGAAGATTAAGTATCTCACAACAGGGACAGAAGCTCTAGT
____________________________________________________________
consensus AATGGCTGAATTGGAAGCCAGGAAGATTAAGTATCTCACAACAGGGACAGAAGCTCTAGT
. : . : . : . : . : . :
JMSF028C02- CATGGGCATTTTAAATGAGGGGACTAATTTTGCTTCCAAATTTTTGTGGTCCATGGGTAT
rJMSF028C02+ CATGGGCATTTTAAATGAGGGGACTAATTTTGCTTCCAAATTTTTGTGGTCCATGGGTAT
____________________________________________________________
consensus CATGGGCATTTTAAATGAGGGGACTAATTTTGCTTCCAAATTTTTGTGGTCCATGGGTAT
. : . : . : . : . : . :
JMSF028C02- TACCCTTTTCAAAGTGCGTGAAGAAACAATCAGGATTTGCGGGGAAGCTAACTTTTTTAA
rJMSF028C02+ TACCCTTTTCAAAGTGCGTGAAGAAACAATCAGGATTTGCGGGGAAGCTAACTTTTTTAA
____________________________________________________________
consensus TACCCTTTTCAAAGTGCGTGAAGAAACAATCAGGATTTGCGGGGAAGCTAACTTTTTTAA
. : . : . : . : . : . :
JMSF028C02- TTTCAGTCCTGAACATCCCCCCTTGACCGAAGATGCGCAAAAGGCCCTTGATTGGGCTCT
rJMSF028C02+ TTTCAGTCCTGAACATCCCCCCTTGACCGAAGATGCGCAAAAGGCCCTTGATTGGGCTCT
____________________________________________________________
consensus TTTCAGTCCTGAACATCCCCCCTTGACCGAAGATGCGCAAAAGGCCCTTGATTGGGCTCT
. : . : . : . : . : . :
JMSF028C02- TAATGAGAAGGTCA
rJMSF028C02+ TAATGAGAAGGTCAAAGAAGGAGATGGCGGAGAGATTACAACTATTCATTTACTACTTGG
____________________________________________________________
consensus TAATGAGAAGGTCAAAGAAGGAGATGGCGGAGAGATTACAACTATTCATTTACTACTTGG
. : . : . : . : . : . :
rJMSF028C02+ AGTTTGGTCACAAGAGGGGTCACCGGGTTACAAGGTGTTGGCTACCCTTGGGTTCAACGA
____________________________________________________________
consensus AGTTTGGTCACAAGAGGGGTCACCGGGTTACAAGGTGTTGGCTACCCTTGGGTTCAACGA
. : . : . : . : . : . :
rJMSF028C02+ CGAAAAAGCTCAAGAGCTGAAGGCCTTAATTTCGAAACCTGGTTTTAAGGAGGACTAGTA
____________________________________________________________
consensus CGAAAAAGCTCAAGAGCTGAAGGCCTTAATTTCGAAACCTGGTTTTAAGGAGGACTAGTA
. : . : . : . : . : . :
rJMSF028C02+ GAGCTTGTAGACACTCAAGGCTGCCATTAAAGTTGATTCTTTTAATCCATAATGCTACAC
____________________________________________________________
consensus GAGCTTGTAGACACTCAAGGCTGCCATTAAAGTTGATTCTTTTAATCCATAATGCTACAC
. : . : . : . : . : . :
rJMSF028C02+ TTTGAATTCATGTTAAATATGGATGAATATTGTGTTATACTCTGTAATTGGAAGAACATA
____________________________________________________________
consensus TTTGAATTCATGTTAAATATGGATGAATATTGTGTTATACTCTGTAATTGGAAGAACATA