Contig 012650:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016K18Sequence524012650 (3)ref|XP_009614965.1|7e-20PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to700011294 (2)ref|XP_009612668.1|4e-75PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic
JMSF027P10Sequence630012650 (3)ref|XP_009614965.1|1e-17PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to435012650 (3)ref|XP_009614364.1|8e-05PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to

Alignment

This contig is upended


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JMSF016K18+               TAATTAAAAAGAGAGAGAGAGAGAGAGGAGTTGAGTTGCCTTAGCCTGGACAGCTC
                      ____________________________________________________________
consensus                 TAATTAAAAAGAGAGAGAGAGAGAGAGGAGTTGAGTTGCCTTAGCCTGGACAGCTC
 
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JMSF016K18+           CTCTGTTGGGTAACGCTTCATCTCGGAGAGCATTAAGGCCATAGTTCGGATCCTTTCGGA
                      ____________________________________________________________
consensus             CTCTGTTGGGTAACGCTTCATCTCGGAGAGCATTAAGGCCATAGTTCGGATCCTTTCGGA
 
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JMSF016K18+           TCCCATCCATGCTTTCCCGAACATTCCGAATCTCTTCGGCGAGTTCCTTTTTCCGACCGG
                      ____________________________________________________________
consensus             TCCCATCCATGCTTTCCCGAACATTCCGAATCTCTTCGGCGAGTTCCTTTTTCCGACCGG
 
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JMSF016K18+           GGTGTTCGATGTCCAGGTAGCGTTTCCATTTCTTGTCGTAGTGGAATTTGGCGGCCACCA
JMSF027P10-                                                GTAGTGGAATTTGGCGGCCACCA
rJMSF027P10+                                                           GGCGGCCACCA
                      ____________________________________________________________
consensus             GGTGTTCGATGTCCAGGTAGCGTTTCCATTTCTTGTCGTAGTGGAATTTGGCGGCCACCA
 
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JMSF016K18+           CATATCTGTCGATCAGATCCTCCGCCTTGTTCACCACCGTTCGGATCTTGGTGATGAGTC
JMSF027P10-           CATATCGGTCGATGAGATCCTCGGCCTTGTTGACCACCGCTCGGATCTTGGTGATGAGTC
rJMSF027P10+          CATATCGGTCGATGAGATCCTCNGCCTTGTTGACCNCCGCTCGGATCTTGGNGATGAGTC
                      ____________________________________________________________
consensus             CATATCGGTCGATGAGATCCTCGGCCTTGTTGACCACCGCTCGGATCTTGGTGATGAGTC
 
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JMSF016K18+           GTTTGAGGATTTCGTTGTCGTAGCGGGCCTTTCCGGCTTCTCTGAGGAAGGCCTTGAAGT
JMSF027P10-           GTTTGAGGATTTCGTTGTCGTAGCGGACCTTTCCGGCTTCTCTGAGGAAGGCCTTGAAGT
rJMSF027P10+          GTTTGAGGAGNTCGTTGTCGNAGNGGACCTNNCNGGCTTCTANGAGGAANNCCNNGAAGT
                      ____________________________________________________________
consensus             GTTTGAGGATTTCGTTGTCGTAGCGGACCTTTCCGGCTTCTCTGAGGAAGGCCTTGAAGT
 
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JMSF016K18+           CGCCCAGGTCTTCTAGAAGCTTCTCGACGTCGTCCTTGAGGCCGGAGATGAGCTGGATGT
JMSF027P10-           CGCCCAGGACATCTAGAAGCTTCTCGACGTCGTCCTTGAGGCCGGAGATGAGCTGGATGT
rJMSF027P10+          CGNCCAGGACATCTAGAAGCTTCTNGACGTNGTCCNNGAGGCCGGAGATGAGCTGGATGT
                      ____________________________________________________________
consensus             CGCCCAGGACATCTAGAAGCTTCTCGACGTCGTCCTTGAGGCCGGAGATGAGCTGGATGT
 
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JMSF016K18+           TCTCTTTCAGAAGCTGAGTCAAGTTCTCTACCAGCAAATTCACTACCACTTCTGCCATCT
JMSF027P10-           TCTCTTTCAGAAGCTGGGTCAAGTTCTCTACCAGCAAATTCACTACCACTTCCGCCATCT
rJMSF027P10+          TNTCTNNCAGAAGCTGGGTCAANTTCTCTACCAGCAAATTCACTACCACTTCCGCCATCT
                      ____________________________________________________________
consensus             TCTCTTTCAGAAGCTGGGTCAAGTTCTCTACCAGCAAATTCACTACCACTTCCGCCATCT
 
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JMSF016K18+           C                                                           
JMSF027P10-           CTCTCTCTCTCTCTAGACCTCGTTTTCTGCTCAAAGATTCTCAGTAGTAGTAGTAGAGGA
rJMSF027P10+          NTCNCTCTCTNTCTAGACCTCGTTTTCTGCTCAAAGATTCTCAGTAGTCGTAGTNGAGGA
                      ____________________________________________________________
consensus             CTCTCTCTCTCTCTAGACCTCGTTTTCTGCTCAAAGATTCTCAGTAGTCGTAGTAGAGGA
 
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JMSF027P10-           AGCCATTGCCAGCTCAAAGGTTCTTTAGTCCGATTATTGAGTTGACTTGCTTAATTTCTT
rJMSF027P10+          ANCCATTGCCAGCTCAAAGGTTCNANAGTCCGATTATTGAGTTGACTTGCTTAATTTCTT
                      ____________________________________________________________
consensus             AGCCATTGCCAGCTCAAAGGTTCTTTAGTCCGATTATTGAGTTGACTTGCTTAATTTCTT
 
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JMSF027P10-           ATTCTC                                                      
rJMSF027P10+          ATTCTCCNCCNNTATCTACTCCCATCAAAGTTTGATTACCNCAAANGTGTAACCATATCA
                      ____________________________________________________________
consensus             ATTCTCCNCCNNTATCTACTCCCATCAAAGTTTGATTACCNCAAANGTGTAACCATATCA