Contig 012648:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018H19Sequence238000788 (6)ref|XP_011089536.1|2e-45PREDICTED: heat shock cognate protein 80 [Sesamum indicum]749012648 (4)gb|KHG21667.1|5e-86Heat shock cognate 80 [Gossypium arboreum]
JMSF024A15Sequence647000788 (6)ref|XP_009785111.1|2e-123PREDICTED: heat shock cognate protein 80 [Nicotiana sylvestris]745012648 (4)gb|KHG21667.1|8e-100Heat shock cognate 80 [Gossypium arboreum]
JMSF027L08Sequence653000788 (6)ref|XP_009591410.1|2e-126PREDICTED: heat shock cognate protein 80 [Nicotiana tomentosiformis] dbj|BAE9740755012648 (4)gb|KHG21667.1|3e-100Heat shock cognate 80 [Gossypium arboreum]
JMSF036P13Sequence616000788 (6)gb|AFK35835.1|6e-118unknown [Lotus japonicus]711012648 (4)gb|KHG21667.1|1e-81Heat shock cognate 80 [Gossypium arboreum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF024A15+ TACATGGTTGATGCC
rJMSF027L08+ AGAAGGGGTATGAGGTCATTTACATGGTTGATGCC
                      ____________________________________________________________
consensus AGAAGGGGTATGAGGTCATTTACATGGTTGATGCC
 
. : . : . : . : . : . :
rJMSF018H19+ TTGAAGGAGTTTGATGGAAAGAAGCTTGTATCTGCA
rJMSF024A15+ ATTGATGAGTATGCTATTGGGCAGTTGAAGGAGTTTGATGGAAAGAAGCTTGTATCTGCA
rJMSF027L08+ ATTGATGAGTATGCTATTGGGCAGTTGAAGGAGTTTGATGGAAAGAAGCTTGTATCTGCA
                      ____________________________________________________________
consensus ATTGATGAGTATGCTATTGGGCAGTTGAAGGAGTTTGATGGAAAGAAGCTTGTATCTGCA
 
. : . : . : . : . : . :
rJMSF036P13+ CCAAGGAAGGCTTGAAGCTTGATGAGAGTGAGGATGAGAAGAAGAAAAAGGAGGAACTG
rJMSF018H19+ ACCAAGGAAGGCTTGAAGCTTGATGAGAGTGAGGATGAGAAGAAGAAAAAGGAGGAACTG
rJMSF024A15+ ACCAAGGAAGGCTTGAAGCTTGATGAGAGTGAGGATGAGAAGAAGAAAAAGGAGGAACTG
rJMSF027L08+ ACCAAGGAAGGCTTGAAGCTTGATGAGAGTGAGGATGAGAAGAAGAAAAAGGAGGAACTG
                      ____________________________________________________________
consensus ACCAAGGAAGGCTTGAAGCTTGATGAGAGTGAGGATGAGAAGAAGAAAAAGGAGGAACTG
 
. : . : . : . : . : . :
rJMSF036P13+ AAGGCCAAGTTTGAGGGTCTGTGCACAGTGATGAAGGATGTACTTGGTGACAGGGTTGAG
rJMSF018H19+ AAGGCCAAGTTTGAGGGTCTGTGCACAGTGATGAAGGATGTACTTGGTGACAGGGTTGAG
rJMSF024A15+ AAGGCCAAGTTTGAGGGTCTGTGCACAGTGATGAAGGATGTACTTGGTGACAGGGTTGAG
rJMSF027L08+ AAGGCCAAGTTTGAGGGTCTGTGCACAGTGATGAAGGATGTACTTGGTGACAGGGTTGAG
                      ____________________________________________________________
consensus AAGGCCAAGTTTGAGGGTCTGTGCACAGTGATGAAGGATGTACTTGGTGACAGGGTTGAG
 
. : . : . : . : . : . :
rJMSF036P13+ AAGGTGATTGTTTCTGACCGTGTTGTGGACTCTCCCTGCTGTTTGGTTACCGGAGAATAT
rJMSF018H19+ AAGGTGATTGTTTCTGACCGTGTTGTGGACTCTCCCTGCTGTTTGGTTACCGGAGAATAT
rJMSF024A15+ AAGGTGATTGTTTCTGACCGTGTTGTGGACTCTCCCTGCTGTTTGGTTACCGGAGAATAT
rJMSF027L08+ AAGGTGATTGTTTCTGACCGTGTTGTGGACTCTCCCTGCTGTTTGGTTACCGGAGAATAT
                      ____________________________________________________________
consensus AAGGTGATTGTTTCTGACCGTGTTGTGGACTCTCCCTGCTGTTTGGTTACCGGAGAATAT
 
. : . : . : . : . : . :
rJMSF036P13+ GGATGGACAGCTAACATGGAGAGAATTATGAAGGCACAAGCTCTTAGGGACTCTAGCATG
rJMSF018H19+ GGATGGACAGCTAACATGGAGAGAATTATGAAGGCACAAGCTCTTAGGGACTCTAGCATG
rJMSF024A15+ GGATGGACAGCTAACATGGAGAGAATTATGAAGGCACAAGCTCTTAGGGACTCTAGCATG
rJMSF027L08+ GGATGGACAGCTAACATGGAGAGAATTATGAAGGCACAAGCTCTTAGGGACTCTAGCATG
                      ____________________________________________________________
consensus GGATGGACAGCTAACATGGAGAGAATTATGAAGGCACAAGCTCTTAGGGACTCTAGCATG
 
. : . : . : . : . : . :
rJMSF036P13+ GCAGGGTACATGTCTTCCAAGAAGACCATGGAGATCAACCCAGAGAACCCCATCATGGAG
rJMSF018H19+ GCAGGGTACATGTCTTCCAAGAAGACCATGGAGATCAACCCAGAGAACCCCATCATGGAG
rJMSF024A15+ GCAGGGTACATGTCTTCCAAGAAGACCATGGAGATCAACCCAGAGAACCCCATCATGGAG
rJMSF027L08+ GCAGGGTACATGTCTTCCAAGAAGACCATGGAGATCAACCCAGAGAACCCCATCATGGAG
                      ____________________________________________________________
consensus GCAGGGTACATGTCTTCCAAGAAGACCATGGAGATCAACCCAGAGAACCCCATCATGGAG
 
. : . : . : . : . : . :
rJMSF036P13+ GAGCTGTGTAAAAGAGCCGATGCTGACAAGAATGACAAATCTGTGAAGGATCTTGTGTTG
rJMSF018H19+ GAGCTGTGTAAAAGAGCCGATGCTGACAAGAATGACAAATCTGTGAAGGATCTTGTGTTG
rJMSF024A15+ GAGCTGTGTAAAAGAGCCGATGCTGACAAGAATGACAAATCTGTGAAGGATCTTGTGTTG
rJMSF027L08+ GAGCTGTGTAAAAGAGCCGATGCTGACAAGAATGACAAATCTGTGAAGGATCTTGTGTTG
                      ____________________________________________________________
consensus GAGCTGTGTAAAAGAGCCGATGCTGACAAGAATGACAAATCTGTGAAGGATCTTGTGTTG
 
. : . : . : . : . : . :
rJMSF036P13+ TTGTTGTTTGAGACTGCTCTGCTCACTTCGGGTTTCAGCCTCGATGATCCCAATACATTT
rJMSF018H19+ TTGTTGTTTGAGACTGCTCTGCTCACTTCGGGTTTCAGCCTCGATGATCCCAATACATTT
rJMSF024A15+ TTGTTGTTTGAGACTGCTCTGCTCACTTCGGGTTTCAGCCTCGATGATCCCAATACATTT
rJMSF027L08+ TTGTTGTTTGAGACTGCTCTGCTCACTTCGGGTTTCAGCCTCGATGATCCCAATACATTT
                      ____________________________________________________________
consensus TTGTTGTTTGAGACTGCTCTGCTCACTTCGGGTTTCAGCCTCGATGATCCCAATACATTT
 
. : . : . : . : . : . :
rJMSF036P13+ GGCAACAGGATTCACAGGATGTTGAAACTTGGGCTTAGCATTGATGAGGATGCTGGTGAT
rJMSF018H19+ GGCAACAGGATTCACAGGATGTTGAAACTTGGGCTTAGCATTGATGAGGATGCTGGTGAT
rJMSF024A15+ GGCAACAGGATTCACAGGATGTTGAAACTTGGGCTTAGCATTGATGAGGATGCTGGTGAT
rJMSF027L08+ GGCAACAGGATTCACAGGATGTTGAAACTTGGGCTTAGCATTGATGAGGATGCTGGTGAT
                      ____________________________________________________________
consensus GGCAACAGGATTCACAGGATGTTGAAACTTGGGCTTAGCATTGATGAGGATGCTGGTGAT
 
. : . : . : . : . : . :
rJMSF036P13+ GC
rJMSF018H19+ GC
rJMSF024A15+ GCCGCAGATGTTGAAATGCCAGCATTGGAGGACGATGCTGAGGGCAGCAAGATGGAGGAA
rJMSF027L08+ GCCGCAGATGTTGAAATGCCAGCATTGGAGGACGATGCTGAGGGCAGCAAGATGGAGGAA
                      ____________________________________________________________
consensus GCCGCAGATGTTGAAATGCCAGCATTGGAGGACGATGCTGAGGGCAGCAAGATGGAGGAA
 
. : . : . : . : . : . :
rJMSF024A15+ GTAGATTAAATGTTCGGATGGCAGGAAGAAGTAGATGAAAGTGTTTAGATTGAAGGTTTT
rJMSF027L08+ GTAGATTAAATGTTCGGATGGCAGGAAGAAGTAGATGAAAGTGTTTAGATTGAAGGTTTT
                      ____________________________________________________________
consensus GTAGATTAAATGTTCGGATGGCAGGAAGAAGTAGATGAAAGTGTTTAGATTGAAGGTTTT
 
. : . : . : . : . : . :
rJMSF024A15+ TTTTACTTATGAACTCTTGTGATACAGTGTTTTTTTGGATGATCTATC
rJMSF027L08+ TTTTACTTATGAACTCTTGTGATACAGTGTTTTTTTGGATGATCTATCATCGTTGTTAAC
                      ____________________________________________________________
consensus TTTTACTTATGAACTCTTGTGATACAGTGTTTTTTTGGATGATCTATCATCGTTGTTAAC