| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF018H19 | Sequence | 238 | 000788 (6) | ref|XP_011089536.1| | 2e-45 | PREDICTED: heat shock cognate protein 80 [Sesamum indicum] | 749 | 012648 (4) | gb|KHG21667.1| | 5e-86 | Heat shock cognate 80 [Gossypium arboreum] |
| JMSF024A15 | Sequence | 647 | 000788 (6) | ref|XP_009785111.1| | 2e-123 | PREDICTED: heat shock cognate protein 80 [Nicotiana sylvestris] | 745 | 012648 (4) | gb|KHG21667.1| | 8e-100 | Heat shock cognate 80 [Gossypium arboreum] |
| JMSF027L08 | Sequence | 653 | 000788 (6) | ref|XP_009591410.1| | 2e-126 | PREDICTED: heat shock cognate protein 80 [Nicotiana tomentosiformis] dbj|BAE9740 | 755 | 012648 (4) | gb|KHG21667.1| | 3e-100 | Heat shock cognate 80 [Gossypium arboreum] |
| JMSF036P13 | Sequence | 616 | 000788 (6) | gb|AFK35835.1| | 6e-118 | unknown [Lotus japonicus] | 711 | 012648 (4) | gb|KHG21667.1| | 1e-81 | Heat shock cognate 80 [Gossypium arboreum] |
This contig is upended
. : . : . : . : . : . :
rJMSF024A15+ TACATGGTTGATGCC
rJMSF027L08+ AGAAGGGGTATGAGGTCATTTACATGGTTGATGCC
____________________________________________________________
consensus AGAAGGGGTATGAGGTCATTTACATGGTTGATGCC
. : . : . : . : . : . :
rJMSF018H19+ TTGAAGGAGTTTGATGGAAAGAAGCTTGTATCTGCA
rJMSF024A15+ ATTGATGAGTATGCTATTGGGCAGTTGAAGGAGTTTGATGGAAAGAAGCTTGTATCTGCA
rJMSF027L08+ ATTGATGAGTATGCTATTGGGCAGTTGAAGGAGTTTGATGGAAAGAAGCTTGTATCTGCA
____________________________________________________________
consensus ATTGATGAGTATGCTATTGGGCAGTTGAAGGAGTTTGATGGAAAGAAGCTTGTATCTGCA
. : . : . : . : . : . :
rJMSF036P13+ CCAAGGAAGGCTTGAAGCTTGATGAGAGTGAGGATGAGAAGAAGAAAAAGGAGGAACTG
rJMSF018H19+ ACCAAGGAAGGCTTGAAGCTTGATGAGAGTGAGGATGAGAAGAAGAAAAAGGAGGAACTG
rJMSF024A15+ ACCAAGGAAGGCTTGAAGCTTGATGAGAGTGAGGATGAGAAGAAGAAAAAGGAGGAACTG
rJMSF027L08+ ACCAAGGAAGGCTTGAAGCTTGATGAGAGTGAGGATGAGAAGAAGAAAAAGGAGGAACTG
____________________________________________________________
consensus ACCAAGGAAGGCTTGAAGCTTGATGAGAGTGAGGATGAGAAGAAGAAAAAGGAGGAACTG
. : . : . : . : . : . :
rJMSF036P13+ AAGGCCAAGTTTGAGGGTCTGTGCACAGTGATGAAGGATGTACTTGGTGACAGGGTTGAG
rJMSF018H19+ AAGGCCAAGTTTGAGGGTCTGTGCACAGTGATGAAGGATGTACTTGGTGACAGGGTTGAG
rJMSF024A15+ AAGGCCAAGTTTGAGGGTCTGTGCACAGTGATGAAGGATGTACTTGGTGACAGGGTTGAG
rJMSF027L08+ AAGGCCAAGTTTGAGGGTCTGTGCACAGTGATGAAGGATGTACTTGGTGACAGGGTTGAG
____________________________________________________________
consensus AAGGCCAAGTTTGAGGGTCTGTGCACAGTGATGAAGGATGTACTTGGTGACAGGGTTGAG
. : . : . : . : . : . :
rJMSF036P13+ AAGGTGATTGTTTCTGACCGTGTTGTGGACTCTCCCTGCTGTTTGGTTACCGGAGAATAT
rJMSF018H19+ AAGGTGATTGTTTCTGACCGTGTTGTGGACTCTCCCTGCTGTTTGGTTACCGGAGAATAT
rJMSF024A15+ AAGGTGATTGTTTCTGACCGTGTTGTGGACTCTCCCTGCTGTTTGGTTACCGGAGAATAT
rJMSF027L08+ AAGGTGATTGTTTCTGACCGTGTTGTGGACTCTCCCTGCTGTTTGGTTACCGGAGAATAT
____________________________________________________________
consensus AAGGTGATTGTTTCTGACCGTGTTGTGGACTCTCCCTGCTGTTTGGTTACCGGAGAATAT
. : . : . : . : . : . :
rJMSF036P13+ GGATGGACAGCTAACATGGAGAGAATTATGAAGGCACAAGCTCTTAGGGACTCTAGCATG
rJMSF018H19+ GGATGGACAGCTAACATGGAGAGAATTATGAAGGCACAAGCTCTTAGGGACTCTAGCATG
rJMSF024A15+ GGATGGACAGCTAACATGGAGAGAATTATGAAGGCACAAGCTCTTAGGGACTCTAGCATG
rJMSF027L08+ GGATGGACAGCTAACATGGAGAGAATTATGAAGGCACAAGCTCTTAGGGACTCTAGCATG
____________________________________________________________
consensus GGATGGACAGCTAACATGGAGAGAATTATGAAGGCACAAGCTCTTAGGGACTCTAGCATG
. : . : . : . : . : . :
rJMSF036P13+ GCAGGGTACATGTCTTCCAAGAAGACCATGGAGATCAACCCAGAGAACCCCATCATGGAG
rJMSF018H19+ GCAGGGTACATGTCTTCCAAGAAGACCATGGAGATCAACCCAGAGAACCCCATCATGGAG
rJMSF024A15+ GCAGGGTACATGTCTTCCAAGAAGACCATGGAGATCAACCCAGAGAACCCCATCATGGAG
rJMSF027L08+ GCAGGGTACATGTCTTCCAAGAAGACCATGGAGATCAACCCAGAGAACCCCATCATGGAG
____________________________________________________________
consensus GCAGGGTACATGTCTTCCAAGAAGACCATGGAGATCAACCCAGAGAACCCCATCATGGAG
. : . : . : . : . : . :
rJMSF036P13+ GAGCTGTGTAAAAGAGCCGATGCTGACAAGAATGACAAATCTGTGAAGGATCTTGTGTTG
rJMSF018H19+ GAGCTGTGTAAAAGAGCCGATGCTGACAAGAATGACAAATCTGTGAAGGATCTTGTGTTG
rJMSF024A15+ GAGCTGTGTAAAAGAGCCGATGCTGACAAGAATGACAAATCTGTGAAGGATCTTGTGTTG
rJMSF027L08+ GAGCTGTGTAAAAGAGCCGATGCTGACAAGAATGACAAATCTGTGAAGGATCTTGTGTTG
____________________________________________________________
consensus GAGCTGTGTAAAAGAGCCGATGCTGACAAGAATGACAAATCTGTGAAGGATCTTGTGTTG
. : . : . : . : . : . :
rJMSF036P13+ TTGTTGTTTGAGACTGCTCTGCTCACTTCGGGTTTCAGCCTCGATGATCCCAATACATTT
rJMSF018H19+ TTGTTGTTTGAGACTGCTCTGCTCACTTCGGGTTTCAGCCTCGATGATCCCAATACATTT
rJMSF024A15+ TTGTTGTTTGAGACTGCTCTGCTCACTTCGGGTTTCAGCCTCGATGATCCCAATACATTT
rJMSF027L08+ TTGTTGTTTGAGACTGCTCTGCTCACTTCGGGTTTCAGCCTCGATGATCCCAATACATTT
____________________________________________________________
consensus TTGTTGTTTGAGACTGCTCTGCTCACTTCGGGTTTCAGCCTCGATGATCCCAATACATTT
. : . : . : . : . : . :
rJMSF036P13+ GGCAACAGGATTCACAGGATGTTGAAACTTGGGCTTAGCATTGATGAGGATGCTGGTGAT
rJMSF018H19+ GGCAACAGGATTCACAGGATGTTGAAACTTGGGCTTAGCATTGATGAGGATGCTGGTGAT
rJMSF024A15+ GGCAACAGGATTCACAGGATGTTGAAACTTGGGCTTAGCATTGATGAGGATGCTGGTGAT
rJMSF027L08+ GGCAACAGGATTCACAGGATGTTGAAACTTGGGCTTAGCATTGATGAGGATGCTGGTGAT
____________________________________________________________
consensus GGCAACAGGATTCACAGGATGTTGAAACTTGGGCTTAGCATTGATGAGGATGCTGGTGAT
. : . : . : . : . : . :
rJMSF036P13+ GC
rJMSF018H19+ GC
rJMSF024A15+ GCCGCAGATGTTGAAATGCCAGCATTGGAGGACGATGCTGAGGGCAGCAAGATGGAGGAA
rJMSF027L08+ GCCGCAGATGTTGAAATGCCAGCATTGGAGGACGATGCTGAGGGCAGCAAGATGGAGGAA
____________________________________________________________
consensus GCCGCAGATGTTGAAATGCCAGCATTGGAGGACGATGCTGAGGGCAGCAAGATGGAGGAA
. : . : . : . : . : . :
rJMSF024A15+ GTAGATTAAATGTTCGGATGGCAGGAAGAAGTAGATGAAAGTGTTTAGATTGAAGGTTTT
rJMSF027L08+ GTAGATTAAATGTTCGGATGGCAGGAAGAAGTAGATGAAAGTGTTTAGATTGAAGGTTTT
____________________________________________________________
consensus GTAGATTAAATGTTCGGATGGCAGGAAGAAGTAGATGAAAGTGTTTAGATTGAAGGTTTT
. : . : . : . : . : . :
rJMSF024A15+ TTTTACTTATGAACTCTTGTGATACAGTGTTTTTTTGGATGATCTATC
rJMSF027L08+ TTTTACTTATGAACTCTTGTGATACAGTGTTTTTTTGGATGATCTATCATCGTTGTTAAC
____________________________________________________________
consensus TTTTACTTATGAACTCTTGTGATACAGTGTTTTTTTGGATGATCTATCATCGTTGTTAAC