Contig 012643:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026P07Sequence672012643 (3)ref|XP_009616216.1|2e-15PREDICTED: ocs element-binding factor 1-like [Nicotiana tomentosiformis]736012643 (3)gb|ABB17073.1|4e-58bZIP transcription factor [Capsicum annuum]
JMSF028P07Sequence646012643 (3)ref|NP_001234339.1|2e-46bZIP DNA-binding protein [Solanum lycopersicum] ref|XP_010322240.1| PREDICTED: b

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-                                               GGTCTGTTTCATTGGCGGCCTCTA
                      ____________________________________________________________
consensus                                                 GGTCTGTTTCATTGGCGGCCTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           CTGCTAAGATCTAATCGTTAAAGTCTGCTCTCGCCATCCTGATTGAATATAAACCAACCT
                      ____________________________________________________________
consensus             CTGCTAAGATCTAATCGTTAAAGTCTGCTCTCGCCATCCTGATTGAATATAAACCAACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           AGAGTTTACCTTAGATAAACCAGCTTGATTTCTGAATTGGGATTTAGAATTTTACAAATA
                      ____________________________________________________________
consensus             AGAGTTTACCTTAGATAAACCAGCTTGATTTCTGAATTGGGATTTAGAATTTTACAAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           ATTTTCCATGTTTCCTTTATGAAATCTTTTCGAATGCGTCGAATCCGTATCCTCCACTCT
                      ____________________________________________________________
consensus             ATTTTCCATGTTTCCTTTATGAAATCTTTTCGAATGCGTCGAATCCGTATCCTCCACTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           TTCTCTGTTGTATTTCTTTACTGGTTCTATGTGTTCTCATGAATTGCCCCCTCATTAGTG
                      ____________________________________________________________
consensus             TTCTCTGTTGTATTTCTTTACTGGTTCTATGTGTTCTCATGAATTGCCCCCTCATTAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           TTCCTGCCGTCCATTCTGCTATCTGCAAAATCCTAATTTCCATTCTCAAACTTATTGGTA
                      ____________________________________________________________
consensus             TTCCTGCCGTCCATTCTGCTATCTGCAAAATCCTAATTTCCATTCTCAAACTTATTGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           GACTTCTGAGCCATTCATAATTTCTCTCAAACCTTTAATCACTCATATTTTGAAATAAAA
                      ____________________________________________________________
consensus             GACTTCTGAGCCATTCATAATTTCTCTCAAACCTTTAATCACTCATATTTTGAAATAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           TCTGTCTTGATTTGGGACTACACAAGAGACAAAGGGATGTCTTCTGTGCAACAGCCAGCG
rJMSF026P07+                                                      TGTGCAACAGCCAGCG
                      ____________________________________________________________
consensus             TCTGTCTTGATTTGGGACTACACAAGAGACAAAGGGATGTCTTCTGTGCAACAGCCAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           AGTTCAGGTTCATCCTCTGATCTGGATCAGCGTTATGCAATGTATGATGAAAAGAAAAGG
rJMSF028P07+                                                                AAAAGG
rJMSF026P07+          AGTTCAGGTTCATCCTCTGATCTGGATCAGCGTTATGCAATGTATGATGAAAAGAAAAGG
                      ____________________________________________________________
consensus             AGTTCAGGTTCATCCTCTGATCTGGATCAGCGTTATGCAATGTATGATGAAAAGAAAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           AAGAGGATGATATCAAACCGTGAATCTGCCAGGAGGTCACGGATGAAGAAGCAACAGCAT
rJMSF028P07+          AAGAGGATGATATCAAACCGTGAATCGGCCAGGAGGTCACGGATGAAGAAGCAACAGCAT
rJMSF026P07+          AAGAGGATGATATCAAACCGTGAATCTGCCAGGAGGTCACGGATGAAGAAGCAACAGCAT
                      ____________________________________________________________
consensus             AAGAGGATGATATCAAACCGTGAATCTGCCAGGAGGTCACGGATGAAGAAGCAACAGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           GTTGATGAATTATTTAGCCAGAAGACTCTGCTGCAGAATGAGCAGAGTATTAGTAAGCAG
rJMSF028P07+          GTTGATGAATTATTTAGCCAGAAGACTCTGCTGCAGAATGAGCAGAGTATTAGTAAGCAG
rJMSF026P07+          GTTGATGAATTATTTAGCCAGAAGACTCTGCTGCAGAATGAGCAGAGTATTAGTAAGCAG
                      ____________________________________________________________
consensus             GTTGATGAATTATTTAGCCAGAAGACTCTGCTGCAGAATGAGCAGAGTATTAGTAAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026P07-           CAAATTGAAACTCTCTCTGAAGGGCTTGCCAGGCTTTCTGCTGAGAAT            
rJMSF028P07+          CAAATTGAAACTCTCTNTGAAGGGCTTGCCAGGCTTTCTGCTGAGAATGATGTTCTCAGA
rJMSF026P07+          CAAATTGAAACTCTCTCTGAAGGGCTTGCCAGGCTTTCTGCTGAGAATGATGTTCTCAGA
                      ____________________________________________________________
consensus             CAAATTGAAACTCTCTCTGAAGGGCTTGCCAGGCTTTCTGCTGAGAATGATGTTCTCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028P07+          GCCCAATATNCTGAACTGGCGGATCGTTTGCAGTCGATGAATTCCCTTCTTCAATTGTGG
rJMSF026P07+          GCCCAATATGCTGAACTGGCGGATCGTTTGCAGTCGATGAATTCCCTTCTTCAATTGTGG
                      ____________________________________________________________
consensus             GCCCAATATGCTGAACTGGCGGATCGTTTGCAGTCGATGAATTCCCTTCTTCAATTGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028P07+          GCAGAGGTCAATGGGACTGTGGTGGATATCCCTGAAATTCCAGACGTTTTGCTCGAGCCA
rJMSF026P07+          GCAGAGGTCAATGGGACTGTGGTGGATATCCCTGAAATTCCAGACGTTTTGCTCGAGCCA
                      ____________________________________________________________
consensus             GCAGAGGTCAATGGGACTGTGGTGGATATCCCTGAAATTCCAGACGTTTTGCTCGAGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028P07+          TGGCAGCNGCCTTGCCCAACTCAACCCATTGTTGCATCCGNTGATATGCTCCAGTTTTGA
rJMSF026P07+          TGGCAGCTGCCTTGCCCAACTCAACCCATTGTTGCATCCGCTGATATGCTCCAGTTTTGA
                      ____________________________________________________________
consensus             TGGCAGCTGCCTTGCCCAACTCAACCCATTGTTGCATCCGCTGATATGCTCCAGTTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028P07+          AATCTTGTGCTTCTAATGTTATCAACTAATCTGACCTGCCTAGGCAGCTCTTGTGTGGTT
rJMSF026P07+          AATCTTGTGCTTCTAATGTTATCAACTAATCTGACCTGCCTAGGCAGCTCTTGTGTGGTT
                      ____________________________________________________________
consensus             AATCTTGTGCTTCTAATGTTATCAACTAATCTGACCTGCCTAGGCAGCTCTTGTGTGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028P07+          CATGGTTTTCAGACTGTCGAGTCTTTCATTGTCATTATGCTTTTGTGTGTTAGTTTNATC
rJMSF026P07+          CATGGTTTTCAGACTGTCGAGTCTTTCATTGTCATTATGCTTTTGTGTGTTAGTTTTATC
                      ____________________________________________________________
consensus             CATGGTTTTCAGACTGTCGAGTCTTTCATTGTCATTATGCTTTTGTGTGTTAGTTTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028P07+          TTTAAGATACGGTCCGATGTCTACTGGTGTGGTGTTCCAGTCTAGGTGTTTTATGTTGNG
rJMSF026P07+          TTTAAGATACGGTCCGATGTCTACTGGTGTGGTGTTCCAGTCTAGGTGTTTTATGTTGTG
                      ____________________________________________________________
consensus             TTTAAGATACGGTCCGATGTCTACTGGTGTGGTGTTCCAGTCTAGGTGTTTTATGTTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028P07+          CATAGCATTAGCTCTTGTTTTCTTGGACCATCAGNTCTTGTATCAANTATGGCTTGTGGG
rJMSF026P07+          CATAGCATTAGCTCTTGTTTTCTTGGACCATCAGTTCTTGTATCAATTATGGCTTGTGGG
                      ____________________________________________________________
consensus             CATAGCATTAGCTCTTGTTTTCTTGGACCATCAGTTCTTGTATCAATTATGGCTTGTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028P07+          ATCACCTATATGCAGATCNGTTGNGAATTTT                             
rJMSF026P07+          ATCACCTATATGCAGATCTGTTGTGAATTTTTTGTACTCTAGTTTATATGGAAGTGAAAC
                      ____________________________________________________________
consensus             ATCACCTATATGCAGATCTGTTGTGAATTTTTTGTACTCTAGTTTATATGGAAGTGAAAC